Wall clock time and date at job start Tue Mar 31 2020 14:31:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46494 * 109.47220 * 2 1 4 4 C 1.46502 * 119.99882 * 269.99387 * 3 2 1 5 5 C 1.50706 * 109.47323 * 270.00787 * 4 3 2 6 6 H 1.07997 * 119.99935 * 359.97438 * 5 4 3 7 7 C 1.37878 * 119.99987 * 180.02562 * 5 4 3 8 8 N 1.31512 * 119.99927 * 359.97438 * 7 5 4 9 9 Si 1.86791 * 119.99875 * 179.97438 * 7 5 4 10 10 H 1.48499 * 109.47402 * 89.99662 * 9 7 5 11 11 H 1.48499 * 109.47444 * 209.99605 * 9 7 5 12 12 H 1.48500 * 109.47528 * 329.99842 * 9 7 5 13 13 C 1.34769 * 120.00552 * 90.00239 * 3 2 1 14 14 O 1.21283 * 120.00741 * 179.97438 * 13 3 2 15 15 C 1.50707 * 119.99948 * 359.97438 * 13 3 2 16 16 O 1.45195 * 109.47103 * 180.02562 * 15 13 3 17 17 C 1.34757 * 116.99703 * 180.02562 * 16 15 13 18 18 O 1.21527 * 120.00094 * 0.02562 * 17 16 15 19 19 C 1.47288 * 119.99787 * 180.02562 * 17 16 15 20 20 C 1.41334 * 126.42982 * 0.02669 * 19 17 16 21 21 N 1.30431 * 108.01877 * 179.97438 * 20 19 17 22 22 N 1.39932 * 108.91517 * 359.97438 * 21 20 19 23 23 C 1.46504 * 125.74487 * 180.02562 * 22 21 20 24 24 C 1.52999 * 109.46903 * 269.97317 * 23 22 21 25 25 C 1.34231 * 108.51244 * 0.02562 * 22 21 20 26 26 C 1.50696 * 126.29226 * 180.26391 * 25 22 21 27 27 H 1.09000 * 109.47405 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47115 * 300.01170 * 1 2 3 29 29 H 1.09004 * 109.46596 * 60.00068 * 1 2 3 30 30 H 1.09000 * 109.47115 * 239.98830 * 2 1 3 31 31 H 1.09004 * 109.46596 * 119.99932 * 2 1 3 32 32 H 1.09005 * 109.46733 * 29.99813 * 4 3 2 33 33 H 1.08994 * 109.47527 * 150.00149 * 4 3 2 34 34 H 0.97006 * 120.00238 * 180.02562 * 8 7 5 35 35 H 1.09001 * 109.46921 * 60.00191 * 15 13 3 36 36 H 1.08997 * 109.46924 * 300.00919 * 15 13 3 37 37 H 1.08009 * 125.99531 * 359.94437 * 20 19 17 38 38 H 1.08994 * 109.46858 * 29.97203 * 23 22 21 39 39 H 1.08995 * 109.47357 * 149.97612 * 23 22 21 40 40 H 1.08998 * 109.47518 * 179.97438 * 24 23 22 41 41 H 1.09000 * 109.47519 * 300.00309 * 24 23 22 42 42 H 1.09012 * 109.46968 * 59.99887 * 24 23 22 43 43 H 1.09007 * 109.47149 * 269.71404 * 26 25 22 44 44 H 1.09001 * 109.47680 * 29.71290 * 26 25 22 45 45 H 1.09005 * 109.47158 * 149.71511 * 26 25 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2627 2.0717 -1.2688 5 6 3.6860 1.8347 -1.7038 6 1 4.3430 1.2305 -1.0958 7 6 4.1497 2.3901 -2.8775 8 7 3.3498 3.1262 -3.6176 9 14 5.9140 2.0969 -3.4163 10 1 5.9778 0.8762 -4.2595 11 1 6.3932 3.2645 -4.1989 12 1 6.7739 1.9170 -2.2191 13 6 2.2431 2.0165 1.1671 14 8 2.6478 3.1598 1.1671 15 6 1.9914 1.3064 2.4723 16 8 2.3056 2.1962 3.5758 17 6 2.1339 1.7106 4.8211 18 8 1.7331 0.5745 4.9804 19 6 2.4321 2.5569 5.9891 20 6 2.9016 3.8897 5.9619 21 7 3.0431 4.2929 7.1942 22 7 2.6760 3.2537 8.0564 23 6 2.6941 3.3095 9.5203 24 6 4.0607 2.8487 10.0312 25 6 2.3043 2.1972 7.3165 26 6 1.8286 0.8659 7.8383 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5140 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 1.8934 -0.5140 -0.8899 31 1 1.8933 -0.5139 0.8900 32 1 1.5819 1.6875 -2.0284 33 1 2.0958 3.1409 -1.1386 34 1 3.6758 3.5167 -4.4436 35 1 2.6213 0.4187 2.5302 36 1 0.9434 1.0125 2.5298 37 1 3.1078 4.4722 5.0759 38 1 2.5102 4.3328 9.8472 39 1 1.9182 2.6558 9.9185 40 1 4.0745 2.8905 11.1203 41 1 4.2448 1.8253 9.7042 42 1 4.8368 3.5025 9.6330 43 1 2.6817 0.1991 7.9642 44 1 1.3336 1.0079 8.7990 45 1 1.1264 0.4275 7.1290 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000869846676.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:31:07 Heat of formation + Delta-G solvation = -69.914255 kcal Electronic energy + Delta-G solvation = -27091.907702 eV Core-core repulsion = 23110.648399 eV Total energy + Delta-G solvation = -3981.259303 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.64821 -41.36727 -40.35252 -37.48360 -36.92336 -35.67869 -34.92329 -33.26793 -31.75545 -31.19197 -30.34505 -28.74719 -28.04029 -25.27513 -24.75743 -24.20885 -23.72850 -21.83158 -20.63703 -20.13055 -19.07380 -18.62018 -17.98462 -17.74916 -17.64174 -17.03313 -16.78003 -16.47063 -16.12200 -15.80833 -15.59062 -14.89465 -14.76548 -14.63746 -14.49960 -14.22841 -13.98710 -13.81258 -13.74439 -13.56566 -13.38517 -13.32362 -13.25737 -13.06118 -12.90967 -12.67045 -12.49242 -12.26471 -12.20267 -12.01507 -11.93194 -11.75062 -11.68586 -11.46681 -10.69679 -10.63269 -10.50098 -9.85568 -9.52012 -8.22199 -6.36489 0.23643 0.92897 1.11806 1.37216 1.40543 1.49642 1.54107 1.65434 2.07535 2.35424 2.50079 3.07812 3.42577 3.47897 3.49226 3.77749 3.87499 4.00139 4.03420 4.03764 4.15839 4.19482 4.33054 4.41030 4.42336 4.62044 4.64647 4.72939 4.79789 4.88056 4.92862 4.97183 5.04270 5.05323 5.20246 5.21489 5.26294 5.38601 5.40005 5.56182 5.81499 5.83189 6.05622 6.40176 6.60359 6.72842 6.76027 7.23764 7.38667 8.85216 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.018006 B = 0.002582 C = 0.002385 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1554.644586 B =10840.277350 C =11737.030583 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.094 3.906 3 N -0.595 5.595 4 C 0.263 3.737 5 C -0.543 4.543 6 H 0.054 0.946 7 C 0.008 3.992 8 N -0.928 5.928 9 Si 0.968 3.032 10 H -0.262 1.262 11 H -0.281 1.281 12 H -0.274 1.274 13 C 0.499 3.501 14 O -0.578 6.578 15 C 0.066 3.934 16 O -0.347 6.347 17 C 0.547 3.453 18 O -0.530 6.530 19 C -0.317 4.317 20 C 0.098 3.902 21 N -0.321 5.321 22 N -0.351 5.351 23 C 0.111 3.889 24 C -0.167 4.167 25 C 0.179 3.821 26 C -0.099 4.099 27 H 0.098 0.902 28 H 0.057 0.943 29 H 0.043 0.957 30 H 0.081 0.919 31 H 0.099 0.901 32 H 0.030 0.970 33 H -0.001 1.001 34 H 0.267 0.733 35 H 0.118 0.882 36 H 0.123 0.877 37 H 0.196 0.804 38 H 0.107 0.893 39 H 0.132 0.868 40 H 0.108 0.892 41 H 0.063 0.937 42 H 0.045 0.955 43 H 0.103 0.897 44 H 0.110 0.890 45 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.252 -8.485 28.429 30.130 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.028 4.028 3 N -0.328 5.328 4 C 0.142 3.858 5 C -0.582 4.582 6 H 0.072 0.928 7 C -0.191 4.191 8 N -0.567 5.567 9 Si 0.792 3.208 10 H -0.187 1.187 11 H -0.207 1.207 12 H -0.199 1.199 13 C 0.286 3.714 14 O -0.458 6.458 15 C -0.011 4.011 16 O -0.263 6.263 17 C 0.394 3.606 18 O -0.421 6.421 19 C -0.330 4.330 20 C -0.089 4.089 21 N -0.139 5.139 22 N -0.130 5.130 23 C -0.007 4.007 24 C -0.225 4.225 25 C 0.044 3.956 26 C -0.157 4.157 27 H 0.117 0.883 28 H 0.076 0.924 29 H 0.062 0.938 30 H 0.100 0.900 31 H 0.117 0.883 32 H 0.048 0.952 33 H 0.017 0.983 34 H 0.076 0.924 35 H 0.135 0.865 36 H 0.140 0.860 37 H 0.213 0.787 38 H 0.125 0.875 39 H 0.150 0.850 40 H 0.126 0.874 41 H 0.082 0.918 42 H 0.064 0.936 43 H 0.121 0.879 44 H 0.129 0.871 45 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -4.825 -7.115 29.203 30.442 hybrid contribution 0.701 -0.169 -1.723 1.868 sum -4.124 -7.284 27.480 28.726 Atomic orbital electron populations 1.22178 0.94328 1.03788 1.01816 1.21870 0.95562 0.80949 1.04422 1.48198 1.63670 1.15287 1.05632 1.18785 0.95567 0.91653 0.79804 1.21701 0.97822 1.32109 1.06573 0.92785 1.25849 1.02396 0.94439 0.96446 1.70049 1.37777 1.34113 1.14783 0.85410 0.78983 0.78208 0.78180 1.18695 1.20686 1.19874 1.20574 0.78288 0.86649 0.85875 1.90676 1.47081 1.20230 1.87768 1.22794 1.04707 0.91930 0.81660 1.86598 1.79486 1.45344 1.14862 1.20162 0.73464 0.84926 0.82079 1.90750 1.45281 1.19464 1.86609 1.19138 1.25574 0.97324 0.90970 1.24336 0.94662 0.93788 0.96130 1.77211 1.24301 1.11887 1.00520 1.49034 1.47654 1.08052 1.08289 1.22323 1.01238 1.06231 0.70929 1.22180 0.94961 1.01738 1.03600 1.21922 0.92004 0.92281 0.89344 1.20877 1.03383 0.88071 1.03381 0.88327 0.92397 0.93782 0.90023 0.88317 0.95219 0.98303 0.92376 0.86455 0.85977 0.78730 0.87474 0.84994 0.87352 0.91821 0.93606 0.87863 0.87150 0.88855 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.03 10.24 71.98 0.74 -3.29 16 2 C 0.09 2.85 5.93 86.38 0.51 3.36 16 3 N -0.60 -25.63 2.46 -826.14 -2.03 -27.66 16 4 C 0.26 14.31 5.16 85.63 0.44 14.75 16 5 C -0.54 -31.63 9.39 25.60 0.24 -31.39 16 6 H 0.05 3.11 7.81 -2.91 -0.02 3.09 16 7 C 0.01 0.45 5.46 84.66 0.46 0.91 16 8 N -0.93 -56.53 13.29 21.45 0.28 -56.25 16 9 Si 0.97 45.44 29.54 68.60 2.03 47.46 16 10 H -0.26 -11.48 7.11 99.48 0.71 -10.77 16 11 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 12 H -0.27 -12.77 7.11 99.48 0.71 -12.06 16 13 C 0.50 21.89 7.75 87.66 0.68 22.57 16 14 O -0.58 -31.68 16.08 15.76 0.25 -31.43 16 15 C 0.07 2.14 4.51 71.24 0.32 2.46 16 16 O -0.35 -12.23 9.60 -50.29 -0.48 -12.71 16 17 C 0.55 16.58 7.95 70.20 0.56 17.14 16 18 O -0.53 -15.69 14.64 19.75 0.29 -15.41 16 19 C -0.32 -8.53 6.13 -20.16 -0.12 -8.65 16 20 C 0.10 2.70 11.87 85.66 1.02 3.72 16 21 N -0.32 -8.14 12.50 -56.25 -0.70 -8.84 16 22 N -0.35 -6.45 3.58 -332.96 -1.19 -7.64 16 23 C 0.11 0.91 6.93 86.38 0.60 1.51 16 24 C -0.17 -1.16 10.24 71.98 0.74 -0.42 16 25 C 0.18 3.53 7.01 42.16 0.30 3.82 16 26 C -0.10 -1.17 9.56 71.23 0.68 -0.48 16 27 H 0.10 1.76 8.14 -2.39 -0.02 1.74 16 28 H 0.06 1.36 7.22 -2.39 -0.02 1.34 16 29 H 0.04 1.26 8.14 -2.38 -0.02 1.24 16 30 H 0.08 2.58 8.07 -2.39 -0.02 2.56 16 31 H 0.10 2.34 6.44 -2.38 -0.02 2.33 16 32 H 0.03 1.62 8.07 -2.38 -0.02 1.60 16 33 H 0.00 -0.07 7.42 -2.39 -0.02 -0.09 16 34 H 0.27 15.26 8.31 -92.70 -0.77 14.49 16 35 H 0.12 3.27 7.40 -2.39 -0.02 3.25 16 36 H 0.12 3.26 7.18 -2.39 -0.02 3.24 16 37 H 0.20 5.29 8.06 -2.91 -0.02 5.27 16 38 H 0.11 0.79 8.14 -2.39 -0.02 0.77 16 39 H 0.13 0.18 7.01 -2.39 -0.02 0.16 16 40 H 0.11 0.17 8.14 -2.39 -0.02 0.15 16 41 H 0.06 0.46 8.14 -2.39 -0.02 0.44 16 42 H 0.04 0.54 8.14 -2.38 -0.02 0.52 16 43 H 0.10 1.00 8.14 -2.38 -0.02 0.98 16 44 H 0.11 0.47 7.04 -2.39 -0.02 0.45 16 45 H 0.09 1.45 6.51 -2.38 -0.02 1.43 16 Total: -1.00 -83.18 384.66 6.60 -76.58 By element: Atomic # 1 Polarization: 8.89 SS G_CDS: 1.00 Total: 9.88 kcal Atomic # 6 Polarization: 18.85 SS G_CDS: 7.16 Total: 26.00 kcal Atomic # 7 Polarization: -96.75 SS G_CDS: -3.64 Total: -100.39 kcal Atomic # 8 Polarization: -59.60 SS G_CDS: 0.06 Total: -59.55 kcal Atomic # 14 Polarization: 45.44 SS G_CDS: 2.03 Total: 47.46 kcal Total: -83.18 6.60 -76.58 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000869846676.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.668 kcal (2) G-P(sol) polarization free energy of solvation -83.183 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.516 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.601 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.582 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.914 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds