Wall clock time and date at job start Tue Mar 31 2020 14:27:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42896 * 113.99571 * 2 1 4 4 C 1.53003 * 109.47224 * 179.97438 * 3 2 1 5 5 O 1.42904 * 109.46884 * 64.99751 * 4 3 2 6 6 C 1.42897 * 113.99906 * 180.02562 * 5 4 3 7 7 C 1.53000 * 109.47413 * 179.97438 * 6 5 4 8 8 H 1.08994 * 109.47143 * 184.99733 * 7 6 5 9 9 C 1.52997 * 109.46843 * 305.00402 * 7 6 5 10 10 N 1.46502 * 109.46802 * 65.00276 * 7 6 5 11 11 C 1.34772 * 120.00117 * 155.00401 * 10 7 6 12 12 O 1.21580 * 119.99946 * 359.97438 * 11 10 7 13 13 N 1.34777 * 119.99919 * 179.97438 * 11 10 7 14 14 C 1.39466 * 119.99582 * 175.05874 * 13 11 10 15 15 C 1.38647 * 119.64245 * 174.21890 * 14 13 11 16 16 C 1.40826 * 118.66903 * 179.71896 * 15 14 13 17 17 C 1.41538 * 120.99312 * 179.97438 * 16 15 14 18 18 H 1.07997 * 120.00344 * 147.47416 * 17 16 15 19 19 C 1.40032 * 120.00277 * 327.47337 * 17 16 15 20 20 N 1.30749 * 119.99828 * 359.81920 * 19 17 16 21 21 Si 1.86803 * 120.00143 * 179.82267 * 19 17 16 22 22 H 1.48498 * 109.47116 * 60.00023 * 21 19 17 23 23 H 1.48500 * 109.46965 * 179.97438 * 21 19 17 24 24 H 1.48498 * 109.46972 * 299.99577 * 21 19 17 25 25 C 1.41160 * 118.00569 * 0.02562 * 16 15 14 26 26 C 1.36594 * 119.13059 * 0.02562 * 25 16 15 27 27 N 1.32061 * 121.25622 * 359.97438 * 26 25 16 28 28 H 1.08999 * 109.47092 * 299.99877 * 1 2 3 29 29 H 1.08991 * 109.47235 * 60.00726 * 1 2 3 30 30 H 1.08998 * 109.46573 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47538 * 59.99597 * 3 2 1 32 32 H 1.09005 * 109.47552 * 299.99368 * 3 2 1 33 33 H 1.08999 * 109.46937 * 304.99776 * 4 3 2 34 34 H 1.08999 * 109.47138 * 184.99737 * 4 3 2 35 35 H 1.09011 * 109.47139 * 59.99824 * 6 5 4 36 36 H 1.08997 * 109.47337 * 300.00477 * 6 5 4 37 37 H 1.08997 * 109.46974 * 299.99041 * 9 7 6 38 38 H 1.08994 * 109.47797 * 59.99732 * 9 7 6 39 39 H 1.09005 * 109.46598 * 179.97438 * 9 7 6 40 40 H 0.97002 * 119.99684 * 334.99668 * 10 7 6 41 41 H 0.96998 * 119.99976 * 355.06156 * 13 11 10 42 42 H 1.07994 * 120.66688 * 359.74394 * 15 14 13 43 43 H 0.96994 * 119.99357 * 179.97438 * 20 19 17 44 44 H 1.08000 * 120.43546 * 179.97438 * 25 16 15 45 45 H 1.07998 * 119.36918 * 179.97438 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5354 1.1848 0.0006 5 8 3.9658 0.5793 -1.2201 6 6 5.3821 0.4189 -1.3216 7 6 5.7266 -0.2359 -2.6608 8 1 6.7967 -0.4392 -2.7012 9 6 4.9524 -1.5480 -2.8011 10 7 5.3596 0.6671 -3.7545 11 6 5.9865 0.5745 -4.9440 12 8 6.8569 -0.2581 -5.1092 13 7 5.6484 1.4049 -5.9503 14 6 6.3656 1.3793 -7.1462 15 6 5.9392 2.1483 -8.2181 16 6 6.6821 2.1115 -9.4139 17 6 6.2910 2.8765 -10.5387 18 1 7.0393 3.2719 -11.2095 19 6 4.9337 3.1206 -10.7819 20 7 4.0275 2.6390 -9.9717 21 14 4.4178 4.1343 -12.2637 22 1 4.8913 3.4721 -13.5056 23 1 2.9374 4.2456 -12.2961 24 1 5.0146 5.4907 -12.1675 25 6 7.8278 1.2881 -9.4574 26 6 8.1693 0.5649 -8.3500 27 7 7.4492 0.6234 -7.2445 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3632 -1.0277 0.0005 31 1 1.6884 1.8465 0.8899 32 1 1.6886 1.8464 -0.8901 33 1 3.8507 0.5687 0.8427 34 1 3.9783 2.1767 0.0902 35 1 5.7354 -0.2134 -0.5069 36 1 5.8637 1.3947 -1.2592 37 1 5.2255 -2.2198 -1.9874 38 1 3.8823 -1.3446 -2.7607 39 1 5.1975 -2.0142 -3.7554 40 1 4.6654 1.3316 -3.6225 41 1 4.9064 2.0203 -5.8428 42 1 5.0553 2.7636 -8.1375 43 1 3.0874 2.8084 -10.1400 44 1 8.4260 1.2300 -10.3547 45 1 9.0449 -0.0666 -8.3792 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000871724059.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:27:00 Heat of formation + Delta-G solvation = -81.284685 kcal Electronic energy + Delta-G solvation = -26759.633655 eV Core-core repulsion = 22777.881293 eV Total energy + Delta-G solvation = -3981.752362 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -39.85618 -38.83441 -38.11538 -37.45821 -35.09830 -34.08666 -33.63395 -31.21880 -30.43722 -30.02347 -28.17707 -26.72891 -26.25049 -25.92518 -22.87843 -22.47900 -21.82618 -20.68308 -19.98148 -18.06443 -17.63834 -17.23951 -17.03790 -16.28575 -15.75390 -15.59136 -15.51560 -15.17175 -14.84100 -14.41427 -14.31766 -14.13699 -13.79349 -13.49490 -13.26988 -12.83485 -12.67354 -12.54141 -12.49446 -12.32612 -12.05703 -11.84011 -11.58017 -11.38531 -11.17492 -11.15755 -10.91223 -10.85241 -10.24113 -10.10780 -10.01959 -9.86709 -9.67739 -9.49188 -9.34154 -8.70789 -7.83524 -7.70860 -6.94599 -6.65800 -4.58904 2.74439 2.86905 3.04551 3.07249 3.10653 3.28070 3.37010 3.45094 3.90775 3.96547 4.60282 4.63753 4.76546 4.79014 4.84199 4.95031 5.01013 5.03372 5.11226 5.14233 5.20329 5.37134 5.39700 5.51750 5.61770 5.71810 5.85865 5.97357 6.15282 6.47810 6.59132 6.67773 6.77329 6.83443 6.85123 6.97590 7.02057 7.20006 7.38491 7.47949 7.55118 7.94549 8.18040 8.48976 8.51615 8.77883 8.82580 9.27137 9.76002 10.20228 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.013980 B = 0.002555 C = 0.002238 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2002.418177 B =10957.260841 C =12510.633326 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.383 6.383 3 C 0.062 3.938 4 C 0.063 3.937 5 O -0.374 6.374 6 C 0.054 3.946 7 C 0.170 3.830 8 H 0.099 0.901 9 C -0.159 4.159 10 N -0.746 5.746 11 C 0.693 3.307 12 O -0.537 6.537 13 N -0.668 5.668 14 C 0.353 3.647 15 C -0.235 4.235 16 C 0.143 3.857 17 C -0.459 4.459 18 H 0.080 0.920 19 C 0.074 3.926 20 N -0.804 5.804 21 Si 0.917 3.083 22 H -0.265 1.265 23 H -0.279 1.279 24 H -0.265 1.265 25 C -0.277 4.277 26 C 0.115 3.885 27 N -0.548 5.548 28 H 0.038 0.962 29 H 0.042 0.958 30 H 0.086 0.914 31 H 0.062 0.938 32 H 0.059 0.941 33 H 0.057 0.943 34 H 0.064 0.936 35 H 0.063 0.937 36 H 0.055 0.945 37 H 0.058 0.942 38 H 0.065 0.935 39 H 0.061 0.939 40 H 0.394 0.606 41 H 0.404 0.596 42 H 0.134 0.866 43 H 0.279 0.721 44 H 0.102 0.898 45 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.888 0.471 19.272 20.472 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.302 6.302 3 C -0.014 4.014 4 C -0.013 4.013 5 O -0.293 6.293 6 C -0.023 4.023 7 C 0.064 3.936 8 H 0.117 0.883 9 C -0.218 4.218 10 N -0.404 5.404 11 C 0.392 3.608 12 O -0.408 6.408 13 N -0.316 5.316 14 C 0.127 3.873 15 C -0.261 4.261 16 C 0.134 3.866 17 C -0.491 4.491 18 H 0.098 0.902 19 C -0.143 4.143 20 N -0.431 5.431 21 Si 0.742 3.258 22 H -0.190 1.190 23 H -0.204 1.204 24 H -0.189 1.189 25 C -0.301 4.301 26 C -0.039 4.039 27 N -0.267 5.267 28 H 0.057 0.943 29 H 0.061 0.939 30 H 0.104 0.896 31 H 0.080 0.920 32 H 0.078 0.922 33 H 0.075 0.925 34 H 0.082 0.918 35 H 0.081 0.919 36 H 0.074 0.926 37 H 0.077 0.923 38 H 0.084 0.916 39 H 0.080 0.920 40 H 0.228 0.772 41 H 0.238 0.762 42 H 0.151 0.849 43 H 0.091 0.909 44 H 0.120 0.880 45 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -6.070 -1.072 19.805 20.742 hybrid contribution -1.473 1.870 -1.080 2.614 sum -7.543 0.797 18.726 20.203 Atomic orbital electron populations 1.22746 0.81058 1.02895 0.99865 1.87967 1.19584 1.27244 1.95366 1.22565 0.92436 0.85566 1.00878 1.22500 0.93318 0.97537 0.87987 1.87979 1.21776 1.81922 1.37628 1.22870 0.81911 1.00012 0.97520 1.20754 1.00281 0.89402 0.83172 0.88345 1.22089 1.01287 0.96287 1.02113 1.45211 1.43283 1.40303 1.11626 1.16090 0.82277 0.82300 0.80105 1.90992 1.32519 1.36443 1.80849 1.42567 1.35252 1.40752 1.13045 1.18013 0.90553 0.94580 0.84165 1.21704 1.05873 1.06887 0.91658 1.17598 0.89107 0.88436 0.91428 1.19486 0.92212 1.29240 1.08206 0.90235 1.25911 0.96533 0.94157 0.97725 1.69721 1.02276 1.36103 1.34985 0.86227 0.77740 0.80482 0.81387 1.19000 1.20370 1.18942 1.21755 1.03933 1.04927 0.99501 1.21487 0.96910 0.96841 0.88619 1.67178 1.07641 1.24350 1.27498 0.94298 0.93890 0.89582 0.92000 0.92246 0.92490 0.91797 0.91852 0.92641 0.92329 0.91596 0.92004 0.77224 0.76182 0.84888 0.90949 0.87979 0.86003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 11.01 101.05 1.11 1.33 16 2 O -0.38 -3.89 10.67 -40.09 -0.43 -4.32 16 3 C 0.06 0.48 6.32 37.16 0.23 0.72 16 4 C 0.06 0.49 6.32 37.16 0.23 0.73 16 5 O -0.37 -3.93 9.16 -40.09 -0.37 -4.29 16 6 C 0.05 0.52 5.68 37.16 0.21 0.73 16 7 C 0.17 2.19 2.98 -67.93 -0.20 1.99 16 8 H 0.10 1.39 7.58 -51.93 -0.39 1.00 16 9 C -0.16 -2.11 9.29 37.16 0.35 -1.77 16 10 N -0.75 -11.00 5.06 -58.68 -0.30 -11.30 16 11 C 0.69 13.84 8.48 -86.92 -0.74 13.10 16 12 O -0.54 -12.95 14.30 5.30 0.08 -12.88 16 13 N -0.67 -13.67 5.40 -15.86 -0.09 -13.75 16 14 C 0.35 8.80 7.40 -154.67 -1.15 7.66 16 15 C -0.24 -6.08 8.60 -38.45 -0.33 -6.41 16 16 C 0.14 3.82 5.57 -106.55 -0.59 3.22 16 17 C -0.46 -11.97 9.12 -37.65 -0.34 -12.32 16 18 H 0.08 1.98 7.85 -52.49 -0.41 1.56 16 19 C 0.07 1.81 5.41 -17.34 -0.09 1.72 16 20 N -0.80 -20.27 10.69 55.55 0.59 -19.68 16 21 Si 0.92 18.38 29.56 -169.99 -5.02 13.36 16 22 H -0.27 -5.31 7.11 56.52 0.40 -4.91 16 23 H -0.28 -5.45 7.11 56.52 0.40 -5.05 16 24 H -0.26 -5.22 7.11 56.52 0.40 -4.82 16 25 C -0.28 -6.92 9.85 -39.07 -0.38 -7.30 16 26 C 0.12 2.83 11.10 -18.05 -0.20 2.63 16 27 N -0.55 -14.36 7.90 -12.75 -0.10 -14.46 16 28 H 0.04 0.21 8.14 -51.93 -0.42 -0.21 16 29 H 0.04 0.29 8.14 -51.93 -0.42 -0.14 16 30 H 0.09 0.54 8.14 -51.93 -0.42 0.11 16 31 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 34 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 35 H 0.06 0.51 8.14 -51.92 -0.42 0.09 16 36 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 37 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.06 0.90 7.56 -51.93 -0.39 0.51 16 39 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 40 H 0.39 4.93 8.40 -40.82 -0.34 4.59 16 41 H 0.40 6.84 8.72 -40.82 -0.36 6.48 16 42 H 0.13 3.42 6.25 -52.49 -0.33 3.09 16 43 H 0.28 6.45 8.29 -40.82 -0.34 6.11 16 44 H 0.10 2.33 8.06 -52.49 -0.42 1.90 16 45 H 0.12 2.62 8.06 -52.49 -0.42 2.20 16 LS Contribution 381.50 15.07 5.75 5.75 Total: -1.00 -33.61 381.50 -8.63 -42.24 By element: Atomic # 1 Polarization: 20.15 SS G_CDS: -6.85 Total: 13.30 kcal Atomic # 6 Polarization: 7.93 SS G_CDS: -1.89 Total: 6.04 kcal Atomic # 7 Polarization: -59.31 SS G_CDS: 0.11 Total: -59.19 kcal Atomic # 8 Polarization: -20.77 SS G_CDS: -0.72 Total: -21.49 kcal Atomic # 14 Polarization: 18.38 SS G_CDS: -5.02 Total: 13.36 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -33.61 -8.63 -42.24 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871724059.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.040 kcal (2) G-P(sol) polarization free energy of solvation -33.612 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.653 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.244 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.285 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds