Wall clock time and date at job start Tue Mar 31 2020 14:26:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42896 * 113.99571 * 2 1 4 4 C 1.53003 * 109.47224 * 179.97438 * 3 2 1 5 5 O 1.42904 * 109.46884 * 64.99751 * 4 3 2 6 6 C 1.42897 * 113.99906 * 180.02562 * 5 4 3 7 7 C 1.53000 * 109.47413 * 179.97438 * 6 5 4 8 8 H 1.08994 * 109.47143 * 184.99733 * 7 6 5 9 9 C 1.52997 * 109.46843 * 305.00402 * 7 6 5 10 10 N 1.46502 * 109.46802 * 65.00276 * 7 6 5 11 11 C 1.34772 * 120.00117 * 155.00401 * 10 7 6 12 12 O 1.21580 * 119.99946 * 359.97438 * 11 10 7 13 13 N 1.34777 * 119.99919 * 179.97438 * 11 10 7 14 14 C 1.39466 * 119.99582 * 175.05874 * 13 11 10 15 15 C 1.38647 * 119.64245 * 174.21890 * 14 13 11 16 16 C 1.40826 * 118.66903 * 179.71896 * 15 14 13 17 17 C 1.41538 * 120.99312 * 179.97438 * 16 15 14 18 18 H 1.07997 * 120.00344 * 147.47416 * 17 16 15 19 19 C 1.40032 * 120.00277 * 327.47337 * 17 16 15 20 20 N 1.30749 * 119.99828 * 359.81920 * 19 17 16 21 21 Si 1.86803 * 120.00143 * 179.82267 * 19 17 16 22 22 H 1.48498 * 109.47116 * 60.00023 * 21 19 17 23 23 H 1.48500 * 109.46965 * 179.97438 * 21 19 17 24 24 H 1.48498 * 109.46972 * 299.99577 * 21 19 17 25 25 C 1.41160 * 118.00569 * 0.02562 * 16 15 14 26 26 C 1.36594 * 119.13059 * 0.02562 * 25 16 15 27 27 N 1.32061 * 121.25622 * 359.97438 * 26 25 16 28 28 H 1.08999 * 109.47092 * 299.99877 * 1 2 3 29 29 H 1.08991 * 109.47235 * 60.00726 * 1 2 3 30 30 H 1.08998 * 109.46573 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47538 * 59.99597 * 3 2 1 32 32 H 1.09005 * 109.47552 * 299.99368 * 3 2 1 33 33 H 1.08999 * 109.46937 * 304.99776 * 4 3 2 34 34 H 1.08999 * 109.47138 * 184.99737 * 4 3 2 35 35 H 1.09011 * 109.47139 * 59.99824 * 6 5 4 36 36 H 1.08997 * 109.47337 * 300.00477 * 6 5 4 37 37 H 1.08997 * 109.46974 * 299.99041 * 9 7 6 38 38 H 1.08994 * 109.47797 * 59.99732 * 9 7 6 39 39 H 1.09005 * 109.46598 * 179.97438 * 9 7 6 40 40 H 0.97002 * 119.99684 * 334.99668 * 10 7 6 41 41 H 0.96998 * 119.99976 * 355.06156 * 13 11 10 42 42 H 1.07994 * 120.66688 * 359.74394 * 15 14 13 43 43 H 0.96994 * 119.99357 * 179.97438 * 20 19 17 44 44 H 1.08000 * 120.43546 * 179.97438 * 25 16 15 45 45 H 1.07998 * 119.36918 * 179.97438 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5354 1.1848 0.0006 5 8 3.9658 0.5793 -1.2201 6 6 5.3821 0.4189 -1.3216 7 6 5.7266 -0.2359 -2.6608 8 1 6.7967 -0.4392 -2.7012 9 6 4.9524 -1.5480 -2.8011 10 7 5.3596 0.6671 -3.7545 11 6 5.9865 0.5745 -4.9440 12 8 6.8569 -0.2581 -5.1092 13 7 5.6484 1.4049 -5.9503 14 6 6.3656 1.3793 -7.1462 15 6 5.9392 2.1483 -8.2181 16 6 6.6821 2.1115 -9.4139 17 6 6.2910 2.8765 -10.5387 18 1 7.0393 3.2719 -11.2095 19 6 4.9337 3.1206 -10.7819 20 7 4.0275 2.6390 -9.9717 21 14 4.4178 4.1343 -12.2637 22 1 4.8913 3.4721 -13.5056 23 1 2.9374 4.2456 -12.2961 24 1 5.0146 5.4907 -12.1675 25 6 7.8278 1.2881 -9.4574 26 6 8.1693 0.5649 -8.3500 27 7 7.4492 0.6234 -7.2445 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3632 -1.0277 0.0005 31 1 1.6884 1.8465 0.8899 32 1 1.6886 1.8464 -0.8901 33 1 3.8507 0.5687 0.8427 34 1 3.9783 2.1767 0.0902 35 1 5.7354 -0.2134 -0.5069 36 1 5.8637 1.3947 -1.2592 37 1 5.2255 -2.2198 -1.9874 38 1 3.8823 -1.3446 -2.7607 39 1 5.1975 -2.0142 -3.7554 40 1 4.6654 1.3316 -3.6225 41 1 4.9064 2.0203 -5.8428 42 1 5.0553 2.7636 -8.1375 43 1 3.0874 2.8084 -10.1400 44 1 8.4260 1.2300 -10.3547 45 1 9.0449 -0.0666 -8.3792 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000871724059.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:26:59 Heat of formation + Delta-G solvation = -104.557261 kcal Electronic energy + Delta-G solvation = -26760.642830 eV Core-core repulsion = 22777.881293 eV Total energy + Delta-G solvation = -3982.761537 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.44881 -40.03312 -39.35866 -38.32515 -36.40750 -35.82673 -35.43881 -32.53377 -32.18323 -30.90464 -29.89945 -27.87584 -27.46804 -26.97305 -24.07268 -23.71998 -23.46156 -22.10203 -21.49512 -19.64804 -19.40417 -18.07133 -17.71709 -17.65742 -17.08751 -16.68026 -16.45974 -16.36851 -16.11269 -16.02592 -15.86476 -15.59501 -15.13304 -14.70777 -14.56985 -14.48250 -14.29522 -14.12494 -13.37761 -13.22241 -13.13960 -12.96860 -12.83505 -12.67492 -12.65962 -12.25976 -12.10568 -11.94657 -11.88354 -11.87028 -11.46997 -11.24135 -11.16597 -10.62268 -10.53116 -10.06804 -9.81554 -9.63506 -8.80935 -8.52401 -6.56982 0.84158 1.03589 1.42313 1.53844 1.58176 1.66364 2.22853 2.30501 2.68246 2.88554 2.90436 3.21744 3.75364 3.81186 4.09111 4.16386 4.18722 4.26360 4.37636 4.47416 4.50343 4.54322 4.60343 4.62019 4.67697 4.72246 4.82569 4.84484 4.86399 4.88033 4.92770 5.01905 5.12788 5.28015 5.35418 5.50913 5.61176 5.67987 5.87628 6.03050 6.18765 6.29871 6.32428 6.58510 6.81802 6.87121 7.02397 7.64641 7.90283 8.35825 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.013980 B = 0.002555 C = 0.002238 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2002.418177 B =10957.260841 C =12510.633326 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.414 6.414 3 C 0.057 3.943 4 C 0.059 3.941 5 O -0.396 6.396 6 C 0.064 3.936 7 C 0.164 3.836 8 H 0.087 0.913 9 C -0.150 4.150 10 N -0.724 5.724 11 C 0.691 3.309 12 O -0.580 6.580 13 N -0.662 5.662 14 C 0.351 3.649 15 C -0.251 4.251 16 C 0.113 3.887 17 C -0.487 4.487 18 H 0.084 0.916 19 C 0.033 3.967 20 N -0.828 5.828 21 Si 0.992 3.008 22 H -0.263 1.263 23 H -0.269 1.269 24 H -0.257 1.257 25 C -0.289 4.289 26 C 0.110 3.890 27 N -0.573 5.573 28 H 0.056 0.944 29 H 0.042 0.958 30 H 0.089 0.911 31 H 0.086 0.914 32 H 0.055 0.945 33 H 0.063 0.937 34 H 0.086 0.914 35 H 0.085 0.915 36 H 0.069 0.931 37 H 0.080 0.920 38 H 0.061 0.939 39 H 0.028 0.972 40 H 0.408 0.592 41 H 0.418 0.582 42 H 0.129 0.871 43 H 0.288 0.712 44 H 0.118 0.882 45 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.820 1.558 20.192 21.709 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.333 6.333 3 C -0.019 4.019 4 C -0.017 4.017 5 O -0.316 6.316 6 C -0.013 4.013 7 C 0.059 3.941 8 H 0.105 0.895 9 C -0.209 4.209 10 N -0.382 5.382 11 C 0.391 3.609 12 O -0.455 6.455 13 N -0.311 5.311 14 C 0.123 3.877 15 C -0.277 4.277 16 C 0.105 3.895 17 C -0.519 4.519 18 H 0.102 0.898 19 C -0.182 4.182 20 N -0.455 5.455 21 Si 0.813 3.187 22 H -0.187 1.187 23 H -0.193 1.193 24 H -0.182 1.182 25 C -0.312 4.312 26 C -0.044 4.044 27 N -0.292 5.292 28 H 0.074 0.926 29 H 0.061 0.939 30 H 0.107 0.893 31 H 0.104 0.896 32 H 0.073 0.927 33 H 0.081 0.919 34 H 0.104 0.896 35 H 0.103 0.897 36 H 0.087 0.913 37 H 0.099 0.901 38 H 0.080 0.920 39 H 0.048 0.952 40 H 0.244 0.756 41 H 0.256 0.744 42 H 0.146 0.854 43 H 0.099 0.901 44 H 0.136 0.864 45 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -7.044 0.034 20.791 21.952 hybrid contribution -1.235 1.494 -1.277 2.321 sum -8.279 1.528 19.514 21.253 Atomic orbital electron populations 1.22871 0.79923 1.03475 1.00711 1.87917 1.21052 1.28782 1.95581 1.22737 0.92427 0.84914 1.01831 1.22709 0.93429 0.98616 0.86991 1.87944 1.21885 1.82523 1.39201 1.22752 0.82069 1.00836 0.95604 1.20949 0.99636 0.89334 0.84175 0.89533 1.21993 1.00970 0.96725 1.01184 1.45076 1.42497 1.40391 1.10214 1.16258 0.82107 0.81586 0.80997 1.90957 1.34600 1.38157 1.81785 1.42468 1.35290 1.41198 1.12152 1.18211 0.90398 0.93773 0.85317 1.21670 1.06121 1.07830 0.92097 1.18046 0.90077 0.89247 0.92153 1.19790 0.93427 1.30152 1.08508 0.89826 1.26821 0.95913 0.94774 1.00659 1.69781 1.02943 1.36294 1.36449 0.85094 0.77699 0.78745 0.77185 1.18717 1.19285 1.18159 1.21939 1.03937 1.04984 1.00365 1.21950 0.97441 0.96775 0.88189 1.67302 1.08458 1.25183 1.28298 0.92566 0.93888 0.89261 0.89569 0.92702 0.91922 0.89592 0.89686 0.91254 0.90095 0.91989 0.95247 0.75596 0.74438 0.85357 0.90103 0.86412 0.83329 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 11.01 113.37 1.25 1.59 16 2 O -0.41 -7.88 10.67 -144.34 -1.54 -9.42 16 3 C 0.06 0.77 6.32 71.98 0.45 1.23 16 4 C 0.06 0.77 6.32 71.98 0.45 1.22 16 5 O -0.40 -7.47 9.16 -144.34 -1.32 -8.79 16 6 C 0.06 1.09 5.68 71.98 0.41 1.50 16 7 C 0.16 4.09 2.98 44.99 0.13 4.22 16 8 H 0.09 2.42 7.58 -2.39 -0.02 2.40 16 9 C -0.15 -3.93 9.29 71.98 0.67 -3.26 16 10 N -0.72 -20.91 5.06 -457.83 -2.32 -23.23 16 11 C 0.69 27.81 8.48 179.06 1.52 29.33 16 12 O -0.58 -28.56 14.30 -3.97 -0.06 -28.62 16 13 N -0.66 -27.36 5.40 -322.36 -1.74 -29.10 16 14 C 0.35 17.81 7.40 132.76 0.98 18.80 16 15 C -0.25 -13.28 8.60 23.00 0.20 -13.09 16 16 C 0.11 6.16 5.57 -21.12 -0.12 6.05 16 17 C -0.49 -25.61 9.12 23.52 0.21 -25.39 16 18 H 0.08 4.17 7.85 -2.91 -0.02 4.15 16 19 C 0.03 1.61 5.41 85.29 0.46 2.07 16 20 N -0.83 -41.76 10.69 21.84 0.23 -41.52 16 21 Si 0.99 36.89 29.56 68.60 2.03 38.91 16 22 H -0.26 -9.62 7.11 99.48 0.71 -8.91 16 23 H -0.27 -9.45 7.11 99.48 0.71 -8.75 16 24 H -0.26 -9.22 7.11 99.48 0.71 -8.51 16 25 C -0.29 -14.57 9.85 22.60 0.22 -14.35 16 26 C 0.11 5.44 11.10 84.27 0.94 6.38 16 27 N -0.57 -30.52 7.90 -194.26 -1.53 -32.06 16 28 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 29 H 0.04 0.54 8.14 -2.39 -0.02 0.52 16 30 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 31 H 0.09 0.72 8.14 -2.39 -0.02 0.70 16 32 H 0.05 0.77 8.14 -2.38 -0.02 0.75 16 33 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 34 H 0.09 0.74 8.14 -2.39 -0.02 0.72 16 35 H 0.09 1.12 8.14 -2.38 -0.02 1.10 16 36 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 37 H 0.08 1.72 8.14 -2.39 -0.02 1.71 16 38 H 0.06 1.66 7.56 -2.39 -0.02 1.64 16 39 H 0.03 0.94 8.14 -2.38 -0.02 0.92 16 40 H 0.41 9.69 8.40 -92.71 -0.78 8.91 16 41 H 0.42 14.20 8.72 -92.71 -0.81 13.39 16 42 H 0.13 6.77 6.25 -2.91 -0.02 6.75 16 43 H 0.29 13.15 8.29 -92.71 -0.77 12.38 16 44 H 0.12 5.39 8.06 -2.91 -0.02 5.37 16 45 H 0.15 6.34 8.06 -2.91 -0.02 6.32 16 Total: -1.00 -73.68 381.50 0.96 -72.72 By element: Atomic # 1 Polarization: 45.37 SS G_CDS: -0.57 Total: 44.80 kcal Atomic # 6 Polarization: 8.52 SS G_CDS: 7.78 Total: 16.30 kcal Atomic # 7 Polarization: -120.55 SS G_CDS: -5.36 Total: -125.91 kcal Atomic # 8 Polarization: -43.91 SS G_CDS: -2.92 Total: -46.83 kcal Atomic # 14 Polarization: 36.89 SS G_CDS: 2.03 Total: 38.91 kcal Total: -73.68 0.96 -72.72 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871724059.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.838 kcal (2) G-P(sol) polarization free energy of solvation -73.681 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.519 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.962 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.719 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.557 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds