Wall clock time and date at job start Tue Mar 31 2020 14:39:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46504 * 109.46957 * 2 1 4 4 C 1.46501 * 120.00085 * 269.99563 * 3 2 1 5 5 C 1.52994 * 109.47235 * 270.00277 * 4 3 2 6 6 O 1.42897 * 109.47296 * 65.00138 * 5 4 3 7 7 C 1.42897 * 113.99874 * 180.02562 * 6 5 4 8 8 C 1.53007 * 109.47103 * 179.97438 * 7 6 5 9 9 O 1.42902 * 109.46597 * 64.99961 * 8 7 6 10 10 C 1.34779 * 119.99756 * 89.99984 * 3 2 1 11 11 O 1.21583 * 119.99979 * 179.97438 * 10 3 2 12 12 N 1.34778 * 120.00110 * 359.97438 * 10 3 2 13 13 C 1.39465 * 119.99847 * 185.00425 * 12 10 3 14 14 C 1.38645 * 119.64403 * 185.31827 * 13 12 10 15 15 C 1.40823 * 118.66981 * 179.72260 * 14 13 12 16 16 C 1.41542 * 120.99582 * 180.25458 * 15 14 13 17 17 H 1.08000 * 119.99875 * 153.80098 * 16 15 14 18 18 C 1.40030 * 120.00164 * 333.79416 * 16 15 14 19 19 N 1.30743 * 119.99932 * 350.09750 * 18 16 15 20 20 Si 1.86800 * 120.00283 * 170.08865 * 18 16 15 21 21 H 1.48505 * 109.46846 * 90.00096 * 20 18 16 22 22 H 1.48497 * 109.47315 * 210.00652 * 20 18 16 23 23 H 1.48500 * 109.46987 * 330.00989 * 20 18 16 24 24 C 1.41162 * 118.00677 * 0.27904 * 15 14 13 25 25 C 1.36592 * 119.12776 * 359.97438 * 24 15 14 26 26 N 1.32066 * 121.25828 * 0.02562 * 25 24 15 27 27 H 1.09004 * 109.46794 * 60.00111 * 1 2 3 28 28 H 1.08998 * 109.46851 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47499 * 300.00085 * 1 2 3 30 30 H 1.08994 * 109.47677 * 240.00127 * 2 1 3 31 31 H 1.09008 * 109.47280 * 119.99911 * 2 1 3 32 32 H 1.08999 * 109.46727 * 30.00727 * 4 3 2 33 33 H 1.09007 * 109.46816 * 150.00080 * 4 3 2 34 34 H 1.08998 * 109.47156 * 185.00189 * 5 4 3 35 35 H 1.09004 * 109.47032 * 304.99875 * 5 4 3 36 36 H 1.08996 * 109.47482 * 299.99448 * 7 6 5 37 37 H 1.09000 * 109.47464 * 60.00202 * 7 6 5 38 38 H 1.08999 * 109.47365 * 184.99805 * 8 7 6 39 39 H 1.09000 * 109.47086 * 305.00022 * 8 7 6 40 40 H 0.96698 * 113.99544 * 179.97438 * 9 8 7 41 41 H 0.96993 * 119.99898 * 5.00974 * 12 10 3 42 42 H 1.07994 * 120.66867 * 0.02562 * 14 13 12 43 43 H 0.97003 * 120.00071 * 179.97438 * 19 18 16 44 44 H 1.08002 * 120.43846 * 179.97438 * 24 15 14 45 45 H 1.07999 * 119.36993 * 179.97438 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2625 2.0719 -1.2687 5 6 3.7075 1.8315 -1.7103 6 8 3.8944 0.4433 -1.9935 7 6 5.2179 0.1095 -2.4163 8 6 5.3021 -1.3936 -2.6895 9 8 4.4576 -1.7251 -3.7935 10 6 2.2429 2.0166 1.1672 11 8 2.6486 3.1627 1.1673 12 7 2.0178 1.3814 2.3344 13 6 2.1495 2.0702 3.5399 14 6 2.0252 1.3847 4.7386 15 6 2.1679 2.0994 5.9436 16 6 2.0558 1.4479 7.1951 17 1 2.5580 1.8525 8.0614 18 6 1.2935 0.2789 7.3102 19 7 0.5317 -0.1049 6.3194 20 14 1.3654 -0.7324 8.8791 21 1 0.3227 -0.2561 9.8232 22 1 1.1264 -2.1624 8.5577 23 1 2.7042 -0.5825 9.5038 24 6 2.4255 3.4851 5.8658 25 6 2.5263 4.0748 4.6379 26 7 2.3869 3.3736 3.5274 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 1.8934 -0.5138 -0.8899 31 1 1.8934 -0.5138 0.8900 32 1 1.5817 1.6878 -2.0283 33 1 2.0955 3.1411 -1.1383 34 1 3.9157 2.4163 -2.6063 35 1 4.3863 2.1343 -0.9130 36 1 5.4579 0.6585 -3.3268 37 1 5.9277 0.3764 -1.6333 38 1 6.3316 -1.6629 -2.9258 39 1 4.9768 -1.9423 -1.8056 40 1 4.4616 -2.6642 -4.0237 41 1 1.7642 0.4452 2.3360 42 1 1.8278 0.3230 4.7481 43 1 0.0040 -0.9149 6.3989 44 1 2.5414 4.0714 6.7654 45 1 2.7229 5.1348 4.5738 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000871730207.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:39:22 Heat of formation + Delta-G solvation = -78.446558 kcal Electronic energy + Delta-G solvation = -27589.133797 eV Core-core repulsion = 23607.504505 eV Total energy + Delta-G solvation = -3981.629292 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.05530 -38.50314 -37.96310 -36.63756 -35.43803 -34.34015 -33.73011 -31.48290 -30.47507 -29.86241 -28.91363 -27.61057 -25.95719 -23.27933 -23.25621 -22.65393 -21.87125 -21.04085 -19.18754 -18.03994 -17.85357 -17.52350 -16.73386 -16.43065 -15.75538 -15.36418 -15.13719 -14.88635 -14.55438 -14.29929 -14.15408 -14.12627 -13.69183 -13.47609 -13.24821 -12.94617 -12.80528 -12.56738 -12.31018 -12.09747 -11.92374 -11.76591 -11.54952 -11.42073 -11.16135 -11.15493 -10.94727 -10.86637 -10.35048 -10.25157 -10.09371 -9.73084 -9.68775 -9.43955 -9.34624 -8.37813 -7.93176 -7.67795 -6.97651 -6.70852 -4.59806 2.73187 2.83489 3.00887 3.02421 3.07042 3.27055 3.54172 3.86833 3.91167 3.96810 4.30599 4.74188 4.80922 4.91666 5.03543 5.05359 5.17545 5.23707 5.29595 5.32791 5.41957 5.48143 5.52974 5.72630 5.73734 5.84522 5.86988 5.95220 6.00517 6.29876 6.54957 6.67048 6.80198 6.87660 6.98598 7.07980 7.17300 7.32481 7.34499 7.47408 7.53921 7.89977 8.13250 8.41110 8.50497 8.76329 8.79176 9.23614 9.77343 10.12399 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.014656 B = 0.002996 C = 0.002763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1910.070140 B = 9345.029801 C =10130.949744 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.110 3.890 3 N -0.629 5.629 4 C 0.142 3.858 5 C 0.044 3.956 6 O -0.376 6.376 7 C 0.062 3.938 8 C 0.079 3.921 9 O -0.567 6.567 10 C 0.695 3.305 11 O -0.537 6.537 12 N -0.667 5.667 13 C 0.354 3.646 14 C -0.243 4.243 15 C 0.143 3.857 16 C -0.454 4.454 17 H 0.081 0.919 18 C 0.075 3.925 19 N -0.795 5.795 20 Si 0.914 3.086 21 H -0.269 1.269 22 H -0.276 1.276 23 H -0.261 1.261 24 C -0.283 4.283 25 C 0.119 3.881 26 N -0.553 5.553 27 H 0.056 0.944 28 H 0.064 0.936 29 H 0.059 0.941 30 H 0.088 0.912 31 H 0.067 0.933 32 H 0.080 0.920 33 H 0.098 0.902 34 H 0.054 0.946 35 H 0.055 0.945 36 H 0.053 0.947 37 H 0.061 0.939 38 H 0.058 0.942 39 H 0.055 0.945 40 H 0.377 0.623 41 H 0.404 0.596 42 H 0.132 0.868 43 H 0.280 0.720 44 H 0.101 0.899 45 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.144 -6.829 -15.436 17.380 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.013 4.013 3 N -0.368 5.368 4 C 0.018 3.982 5 C -0.034 4.034 6 O -0.296 6.296 7 C -0.015 4.015 8 C 0.001 3.999 9 O -0.372 6.372 10 C 0.396 3.604 11 O -0.409 6.409 12 N -0.316 5.316 13 C 0.128 3.872 14 C -0.269 4.269 15 C 0.135 3.865 16 C -0.486 4.486 17 H 0.099 0.901 18 C -0.143 4.143 19 N -0.421 5.421 20 Si 0.738 3.262 21 H -0.194 1.194 22 H -0.201 1.201 23 H -0.185 1.185 24 C -0.307 4.307 25 C -0.035 4.035 26 N -0.272 5.272 27 H 0.075 0.925 28 H 0.083 0.917 29 H 0.078 0.922 30 H 0.106 0.894 31 H 0.086 0.914 32 H 0.099 0.901 33 H 0.117 0.883 34 H 0.073 0.927 35 H 0.074 0.926 36 H 0.071 0.929 37 H 0.079 0.921 38 H 0.076 0.924 39 H 0.073 0.927 40 H 0.224 0.776 41 H 0.240 0.760 42 H 0.149 0.851 43 H 0.091 0.909 44 H 0.119 0.881 45 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 4.075 -5.204 -16.336 17.622 hybrid contribution 0.059 -1.922 1.527 2.456 sum 4.135 -7.126 -14.808 16.946 Atomic orbital electron populations 1.22245 0.96270 1.02024 1.02628 1.21459 0.93912 0.82865 1.03112 1.47187 1.70838 1.14292 1.04497 1.21245 0.93838 0.98748 0.84365 1.23071 0.98860 0.82259 0.99183 1.87916 1.28962 1.25138 1.87560 1.22486 0.85723 0.94650 0.98664 1.22195 0.93372 0.94931 0.89426 1.86561 1.68774 1.30442 1.51392 1.16052 0.79347 0.84797 0.80162 1.90982 1.49194 1.15591 1.85120 1.42742 1.71499 1.13811 1.03563 1.18007 0.96463 0.89415 0.83286 1.21611 1.14513 1.00978 0.89816 1.17573 0.85930 0.90170 0.92843 1.19565 1.26930 1.06724 0.95355 0.90121 1.25941 0.93198 0.96970 0.98158 1.69753 1.19066 1.21490 1.31816 0.86223 0.79856 0.78693 0.81424 1.19433 1.20098 1.18473 1.21681 1.16039 0.95752 0.97277 1.21467 0.96436 0.97776 0.87846 1.67188 1.23198 1.05847 1.30926 0.92466 0.91711 0.92186 0.89362 0.91437 0.90118 0.88340 0.92748 0.92631 0.92876 0.92059 0.92397 0.92674 0.77621 0.75976 0.85074 0.90887 0.88076 0.86089 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.01 10.24 37.16 0.38 -1.63 16 2 C 0.11 1.38 5.76 -4.04 -0.02 1.36 16 3 N -0.63 -9.68 2.44 -179.42 -0.44 -10.12 16 4 C 0.14 1.87 5.81 -4.04 -0.02 1.85 16 5 C 0.04 0.55 6.28 37.15 0.23 0.78 16 6 O -0.38 -4.72 9.13 -40.09 -0.37 -5.09 16 7 C 0.06 0.62 6.32 37.16 0.23 0.86 16 8 C 0.08 0.65 7.43 37.16 0.28 0.93 16 9 O -0.57 -5.22 13.62 -40.09 -0.55 -5.77 16 10 C 0.70 14.11 8.23 -86.91 -0.72 13.40 16 11 O -0.54 -12.93 14.22 5.29 0.08 -12.86 16 12 N -0.67 -13.94 5.27 -15.86 -0.08 -14.02 16 13 C 0.35 8.88 7.41 -154.67 -1.15 7.73 16 14 C -0.24 -6.29 8.62 -38.45 -0.33 -6.62 16 15 C 0.14 3.82 5.60 -106.55 -0.60 3.22 16 16 C -0.45 -11.77 9.14 -37.65 -0.34 -12.11 16 17 H 0.08 2.00 7.87 -52.49 -0.41 1.59 16 18 C 0.08 1.82 5.31 -17.34 -0.09 1.73 16 19 N -0.79 -19.64 10.70 55.55 0.59 -19.05 16 20 Si 0.91 18.04 29.57 -169.99 -5.03 13.02 16 21 H -0.27 -5.28 7.11 56.52 0.40 -4.88 16 22 H -0.28 -5.30 7.11 56.52 0.40 -4.90 16 23 H -0.26 -5.12 7.11 56.52 0.40 -4.72 16 24 C -0.28 -7.08 9.85 -39.07 -0.38 -7.46 16 25 C 0.12 2.92 11.10 -18.05 -0.20 2.72 16 26 N -0.55 -14.54 7.89 -12.75 -0.10 -14.64 16 27 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 30 H 0.09 1.03 7.11 -51.93 -0.37 0.66 16 31 H 0.07 0.84 6.30 -51.92 -0.33 0.51 16 32 H 0.08 0.90 8.07 -51.93 -0.42 0.48 16 33 H 0.10 1.39 7.42 -51.92 -0.39 1.01 16 34 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 37 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 39 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 40 H 0.38 1.66 9.12 45.56 0.42 2.08 16 41 H 0.40 7.26 6.39 -40.82 -0.26 7.00 16 42 H 0.13 3.37 6.11 -52.49 -0.32 3.05 16 43 H 0.28 6.27 8.29 -40.82 -0.34 5.93 16 44 H 0.10 2.31 8.06 -52.49 -0.42 1.89 16 45 H 0.12 2.61 8.06 -52.49 -0.42 2.19 16 LS Contribution 377.33 15.07 5.69 5.69 Total: -1.00 -33.86 377.33 -8.80 -42.66 By element: Atomic # 1 Polarization: 19.29 SS G_CDS: -5.86 Total: 13.43 kcal Atomic # 6 Polarization: 9.48 SS G_CDS: -2.73 Total: 6.74 kcal Atomic # 7 Polarization: -57.80 SS G_CDS: -0.03 Total: -57.82 kcal Atomic # 8 Polarization: -22.87 SS G_CDS: -0.84 Total: -23.71 kcal Atomic # 14 Polarization: 18.04 SS G_CDS: -5.03 Total: 13.02 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -33.86 -8.80 -42.66 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871730207.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.783 kcal (2) G-P(sol) polarization free energy of solvation -33.861 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.645 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.802 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.663 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.447 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds