Wall clock time and date at job start Tue Mar 31 2020 14:39:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46504 * 109.46957 * 2 1 4 4 C 1.46501 * 120.00085 * 269.99563 * 3 2 1 5 5 C 1.52994 * 109.47235 * 270.00277 * 4 3 2 6 6 O 1.42897 * 109.47296 * 65.00138 * 5 4 3 7 7 C 1.42897 * 113.99874 * 180.02562 * 6 5 4 8 8 C 1.53007 * 109.47103 * 179.97438 * 7 6 5 9 9 O 1.42902 * 109.46597 * 64.99961 * 8 7 6 10 10 C 1.34779 * 119.99756 * 89.99984 * 3 2 1 11 11 O 1.21583 * 119.99979 * 179.97438 * 10 3 2 12 12 N 1.34778 * 120.00110 * 359.97438 * 10 3 2 13 13 C 1.39465 * 119.99847 * 185.00425 * 12 10 3 14 14 C 1.38645 * 119.64403 * 185.31827 * 13 12 10 15 15 C 1.40823 * 118.66981 * 179.72260 * 14 13 12 16 16 C 1.41542 * 120.99582 * 180.25458 * 15 14 13 17 17 H 1.08000 * 119.99875 * 153.80098 * 16 15 14 18 18 C 1.40030 * 120.00164 * 333.79416 * 16 15 14 19 19 N 1.30743 * 119.99932 * 350.09750 * 18 16 15 20 20 Si 1.86800 * 120.00283 * 170.08865 * 18 16 15 21 21 H 1.48505 * 109.46846 * 90.00096 * 20 18 16 22 22 H 1.48497 * 109.47315 * 210.00652 * 20 18 16 23 23 H 1.48500 * 109.46987 * 330.00989 * 20 18 16 24 24 C 1.41162 * 118.00677 * 0.27904 * 15 14 13 25 25 C 1.36592 * 119.12776 * 359.97438 * 24 15 14 26 26 N 1.32066 * 121.25828 * 0.02562 * 25 24 15 27 27 H 1.09004 * 109.46794 * 60.00111 * 1 2 3 28 28 H 1.08998 * 109.46851 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47499 * 300.00085 * 1 2 3 30 30 H 1.08994 * 109.47677 * 240.00127 * 2 1 3 31 31 H 1.09008 * 109.47280 * 119.99911 * 2 1 3 32 32 H 1.08999 * 109.46727 * 30.00727 * 4 3 2 33 33 H 1.09007 * 109.46816 * 150.00080 * 4 3 2 34 34 H 1.08998 * 109.47156 * 185.00189 * 5 4 3 35 35 H 1.09004 * 109.47032 * 304.99875 * 5 4 3 36 36 H 1.08996 * 109.47482 * 299.99448 * 7 6 5 37 37 H 1.09000 * 109.47464 * 60.00202 * 7 6 5 38 38 H 1.08999 * 109.47365 * 184.99805 * 8 7 6 39 39 H 1.09000 * 109.47086 * 305.00022 * 8 7 6 40 40 H 0.96698 * 113.99544 * 179.97438 * 9 8 7 41 41 H 0.96993 * 119.99898 * 5.00974 * 12 10 3 42 42 H 1.07994 * 120.66867 * 0.02562 * 14 13 12 43 43 H 0.97003 * 120.00071 * 179.97438 * 19 18 16 44 44 H 1.08002 * 120.43846 * 179.97438 * 24 15 14 45 45 H 1.07999 * 119.36993 * 179.97438 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2625 2.0719 -1.2687 5 6 3.7075 1.8315 -1.7103 6 8 3.8944 0.4433 -1.9935 7 6 5.2179 0.1095 -2.4163 8 6 5.3021 -1.3936 -2.6895 9 8 4.4576 -1.7251 -3.7935 10 6 2.2429 2.0166 1.1672 11 8 2.6486 3.1627 1.1673 12 7 2.0178 1.3814 2.3344 13 6 2.1495 2.0702 3.5399 14 6 2.0252 1.3847 4.7386 15 6 2.1679 2.0994 5.9436 16 6 2.0558 1.4479 7.1951 17 1 2.5580 1.8525 8.0614 18 6 1.2935 0.2789 7.3102 19 7 0.5317 -0.1049 6.3194 20 14 1.3654 -0.7324 8.8791 21 1 0.3227 -0.2561 9.8232 22 1 1.1264 -2.1624 8.5577 23 1 2.7042 -0.5825 9.5038 24 6 2.4255 3.4851 5.8658 25 6 2.5263 4.0748 4.6379 26 7 2.3869 3.3736 3.5274 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 1.8934 -0.5138 -0.8899 31 1 1.8934 -0.5138 0.8900 32 1 1.5817 1.6878 -2.0283 33 1 2.0955 3.1411 -1.1383 34 1 3.9157 2.4163 -2.6063 35 1 4.3863 2.1343 -0.9130 36 1 5.4579 0.6585 -3.3268 37 1 5.9277 0.3764 -1.6333 38 1 6.3316 -1.6629 -2.9258 39 1 4.9768 -1.9423 -1.8056 40 1 4.4616 -2.6642 -4.0237 41 1 1.7642 0.4452 2.3360 42 1 1.8278 0.3230 4.7481 43 1 0.0040 -0.9149 6.3989 44 1 2.5414 4.0714 6.7654 45 1 2.7229 5.1348 4.5738 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000871730207.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:39:21 Heat of formation + Delta-G solvation = -101.755403 kcal Electronic energy + Delta-G solvation = -27590.144544 eV Core-core repulsion = 23607.504505 eV Total energy + Delta-G solvation = -3982.640039 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -41.62200 -40.03745 -39.11969 -37.47595 -36.71347 -36.13628 -35.51086 -32.54960 -32.38649 -30.96027 -30.34392 -28.87911 -27.89164 -24.64686 -24.30556 -23.78349 -23.38390 -22.69855 -20.78847 -19.55573 -19.13438 -18.56418 -17.83894 -17.66080 -17.27836 -16.95281 -16.39687 -16.09904 -16.03765 -15.92321 -15.45677 -15.26565 -15.00378 -14.75417 -14.67966 -14.46371 -14.27880 -13.95277 -13.74566 -13.18071 -13.13778 -12.88723 -12.84239 -12.75274 -12.67092 -12.50197 -12.15834 -12.00022 -11.89675 -11.85985 -11.49761 -11.18897 -11.14070 -10.96570 -10.59601 -9.91717 -9.68222 -9.60186 -8.82891 -8.55895 -6.56534 0.84406 1.02272 1.42241 1.54440 1.58957 1.59601 2.21433 2.26084 2.69146 2.83669 2.89701 3.40519 3.77334 3.96940 4.02684 4.07951 4.19377 4.21373 4.24789 4.37122 4.38104 4.49027 4.52231 4.60295 4.71296 4.78418 4.82435 4.83578 4.84704 4.92272 4.93880 4.96888 5.10999 5.25544 5.32755 5.50651 5.59863 5.67614 5.83208 5.97478 6.20645 6.25857 6.56981 6.80081 6.83691 6.89210 6.92718 7.59378 7.90277 8.30871 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.014656 B = 0.002996 C = 0.002763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1910.070140 B = 9345.029801 C =10130.949744 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.109 3.891 3 N -0.618 5.618 4 C 0.138 3.862 5 C 0.052 3.948 6 O -0.389 6.389 7 C 0.052 3.948 8 C 0.080 3.920 9 O -0.589 6.589 10 C 0.691 3.309 11 O -0.580 6.580 12 N -0.662 5.662 13 C 0.351 3.649 14 C -0.260 4.260 15 C 0.115 3.885 16 C -0.482 4.482 17 H 0.084 0.916 18 C 0.036 3.964 19 N -0.816 5.816 20 Si 0.990 3.010 21 H -0.264 1.264 22 H -0.264 1.264 23 H -0.259 1.259 24 C -0.296 4.296 25 C 0.113 3.887 26 N -0.579 5.579 27 H 0.065 0.935 28 H 0.088 0.912 29 H 0.033 0.967 30 H 0.106 0.894 31 H 0.067 0.933 32 H 0.109 0.891 33 H 0.086 0.914 34 H 0.077 0.923 35 H 0.029 0.971 36 H 0.058 0.942 37 H 0.063 0.937 38 H 0.084 0.916 39 H 0.053 0.947 40 H 0.396 0.604 41 H 0.415 0.585 42 H 0.127 0.873 43 H 0.291 0.709 44 H 0.116 0.884 45 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.984 -8.708 -15.990 18.638 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.013 4.013 3 N -0.355 5.355 4 C 0.015 3.985 5 C -0.026 4.026 6 O -0.308 6.308 7 C -0.025 4.025 8 C 0.003 3.997 9 O -0.397 6.397 10 C 0.393 3.607 11 O -0.455 6.455 12 N -0.312 5.312 13 C 0.124 3.876 14 C -0.286 4.286 15 C 0.106 3.894 16 C -0.513 4.513 17 H 0.102 0.898 18 C -0.180 4.180 19 N -0.442 5.442 20 Si 0.811 3.189 21 H -0.188 1.188 22 H -0.188 1.188 23 H -0.183 1.183 24 C -0.320 4.320 25 C -0.040 4.040 26 N -0.299 5.299 27 H 0.084 0.916 28 H 0.107 0.893 29 H 0.053 0.947 30 H 0.124 0.876 31 H 0.085 0.915 32 H 0.127 0.873 33 H 0.104 0.896 34 H 0.095 0.905 35 H 0.047 0.953 36 H 0.076 0.924 37 H 0.082 0.918 38 H 0.102 0.898 39 H 0.072 0.928 40 H 0.246 0.754 41 H 0.254 0.746 42 H 0.145 0.855 43 H 0.102 0.898 44 H 0.135 0.865 45 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 3.902 -7.135 -16.956 18.805 hybrid contribution 0.097 -1.384 1.598 2.116 sum 3.999 -8.519 -15.358 18.012 Atomic orbital electron populations 1.22187 0.95199 1.03339 1.01725 1.21653 0.94656 0.81114 1.03898 1.47239 1.69486 1.15217 1.03596 1.21449 0.95213 0.98139 0.83722 1.22912 0.97501 0.82936 0.99229 1.87879 1.30482 1.24774 1.87704 1.22722 0.84653 0.96206 0.98910 1.22221 0.94705 0.93485 0.89302 1.86498 1.69150 1.32494 1.51560 1.16230 0.79049 0.84467 0.80967 1.90941 1.51149 1.17532 1.85880 1.42650 1.71374 1.14229 1.02928 1.18211 0.95516 0.89344 0.84500 1.21574 1.16039 1.00768 0.90197 1.18010 0.86508 0.91196 0.93663 1.19864 1.27981 1.08196 0.95288 0.89826 1.26831 0.92108 0.97353 1.01728 1.69793 1.18846 1.21984 1.33614 0.85078 0.79838 0.77210 0.76818 1.18847 1.18794 1.18275 1.21869 1.16519 0.95545 0.98101 1.21919 0.95561 0.99010 0.87524 1.67306 1.24387 1.06519 1.31657 0.91625 0.89309 0.94750 0.87629 0.91513 0.87286 0.89594 0.90498 0.95292 0.92379 0.91844 0.89823 0.92846 0.75377 0.74632 0.85506 0.89802 0.86550 0.83477 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.58 10.24 71.98 0.74 -2.84 16 2 C 0.11 2.58 5.76 86.38 0.50 3.07 16 3 N -0.62 -18.73 2.44 -839.83 -2.05 -20.78 16 4 C 0.14 3.51 5.81 86.38 0.50 4.01 16 5 C 0.05 1.26 6.28 71.98 0.45 1.71 16 6 O -0.39 -9.18 9.13 -144.34 -1.32 -10.50 16 7 C 0.05 0.97 6.32 71.98 0.45 1.42 16 8 C 0.08 1.18 7.43 71.98 0.53 1.71 16 9 O -0.59 -9.59 13.62 -144.34 -1.97 -11.55 16 10 C 0.69 28.55 8.23 179.05 1.47 30.03 16 11 O -0.58 -28.70 14.22 -3.98 -0.06 -28.76 16 12 N -0.66 -28.24 5.27 -322.36 -1.70 -29.94 16 13 C 0.35 18.09 7.41 132.76 0.98 19.07 16 14 C -0.26 -13.80 8.62 23.00 0.20 -13.61 16 15 C 0.11 6.25 5.60 -21.11 -0.12 6.13 16 16 C -0.48 -25.25 9.14 23.52 0.21 -25.04 16 17 H 0.08 4.17 7.87 -2.91 -0.02 4.15 16 18 C 0.04 1.73 5.31 85.29 0.45 2.18 16 19 N -0.82 -40.24 10.70 21.84 0.23 -40.01 16 20 Si 0.99 36.13 29.57 68.60 2.03 38.16 16 21 H -0.26 -9.37 7.11 99.48 0.71 -8.66 16 22 H -0.26 -9.03 7.11 99.48 0.71 -8.33 16 23 H -0.26 -9.31 7.11 99.48 0.71 -8.60 16 24 C -0.30 -15.08 9.85 22.60 0.22 -14.86 16 25 C 0.11 5.66 11.10 84.27 0.94 6.59 16 26 N -0.58 -31.19 7.89 -194.27 -1.53 -32.72 16 27 H 0.06 1.31 8.14 -2.38 -0.02 1.29 16 28 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 29 H 0.03 0.92 8.14 -2.39 -0.02 0.90 16 30 H 0.11 2.20 7.11 -2.39 -0.02 2.19 16 31 H 0.07 1.59 6.30 -2.38 -0.02 1.58 16 32 H 0.11 2.17 8.07 -2.39 -0.02 2.15 16 33 H 0.09 2.43 7.42 -2.38 -0.02 2.42 16 34 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 35 H 0.03 0.85 8.14 -2.38 -0.02 0.83 16 36 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 37 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 38 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 39 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 40 H 0.40 2.63 9.12 -74.06 -0.68 1.95 16 41 H 0.41 15.16 6.39 -92.71 -0.59 14.57 16 42 H 0.13 6.70 6.11 -2.91 -0.02 6.68 16 43 H 0.29 12.79 8.29 -92.71 -0.77 12.03 16 44 H 0.12 5.37 8.06 -2.91 -0.02 5.35 16 45 H 0.15 6.35 8.06 -2.91 -0.02 6.33 16 Total: -1.00 -74.00 377.33 0.94 -73.06 By element: Atomic # 1 Polarization: 43.70 SS G_CDS: -0.25 Total: 43.45 kcal Atomic # 6 Polarization: 12.05 SS G_CDS: 7.54 Total: 19.59 kcal Atomic # 7 Polarization: -118.41 SS G_CDS: -5.04 Total: -123.45 kcal Atomic # 8 Polarization: -47.47 SS G_CDS: -3.34 Total: -50.81 kcal Atomic # 14 Polarization: 36.13 SS G_CDS: 2.03 Total: 38.16 kcal Total: -74.00 0.94 -73.06 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871730207.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.695 kcal (2) G-P(sol) polarization free energy of solvation -73.998 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.692 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.937 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.061 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.755 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds