Wall clock time and date at job start Tue Mar 31 2020 13:35:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.46896 * 2 1 4 4 H 1.09003 * 109.46835 * 304.99931 * 3 2 1 5 5 N 1.46497 * 109.47177 * 64.99611 * 3 2 1 6 6 C 1.34779 * 120.00114 * 274.99767 * 5 3 2 7 7 O 1.21577 * 119.99944 * 0.02562 * 6 5 3 8 8 N 1.34779 * 119.99790 * 179.97438 * 6 5 3 9 9 C 1.39455 * 119.99804 * 175.41008 * 8 6 5 10 10 C 1.38644 * 119.64905 * 173.87232 * 9 8 6 11 11 C 1.40817 * 118.67652 * 179.71843 * 10 9 8 12 12 C 1.41541 * 120.99804 * 179.97438 * 11 10 9 13 13 H 1.08008 * 119.99568 * 155.06469 * 12 11 10 14 14 C 1.40029 * 120.00019 * 335.06456 * 12 11 10 15 15 N 1.30740 * 120.00192 * 345.12545 * 14 12 11 16 16 Si 1.86803 * 119.99807 * 165.12661 * 14 12 11 17 17 H 1.48493 * 109.47258 * 90.00059 * 16 14 12 18 18 H 1.48502 * 109.46722 * 210.00032 * 16 14 12 19 19 H 1.48506 * 109.46875 * 329.99630 * 16 14 12 20 20 C 1.41166 * 118.00519 * 0.02562 * 11 10 9 21 21 C 1.36591 * 119.12640 * 359.97438 * 20 11 10 22 22 N 1.32069 * 121.26078 * 0.02562 * 21 20 11 23 23 C 1.53001 * 109.47077 * 184.99895 * 3 2 1 24 24 O 1.42899 * 109.46793 * 299.99721 * 23 3 2 25 25 C 1.42905 * 113.99843 * 200.21924 * 24 23 3 26 26 O 1.42902 * 109.47086 * 59.99959 * 23 3 2 27 27 C 1.42897 * 113.99707 * 166.60780 * 26 23 3 28 28 H 1.09003 * 109.46691 * 179.97438 * 1 2 3 29 29 H 1.08989 * 109.47347 * 300.00190 * 1 2 3 30 30 H 1.09007 * 109.47130 * 60.00641 * 1 2 3 31 31 H 1.08998 * 109.47117 * 239.99810 * 2 1 3 32 32 H 1.09002 * 109.47160 * 119.99839 * 2 1 3 33 33 H 0.97005 * 120.00071 * 95.00318 * 5 3 2 34 34 H 0.96999 * 119.99834 * 355.41166 * 8 6 5 35 35 H 1.07999 * 120.66089 * 359.74574 * 10 9 8 36 36 H 0.96994 * 119.99988 * 179.97438 * 15 14 12 37 37 H 1.07996 * 120.44109 * 179.97438 * 20 11 10 38 38 H 1.08004 * 119.37377 * 179.97438 * 21 20 11 39 39 H 1.08998 * 109.46936 * 179.97438 * 23 3 2 40 40 H 1.08992 * 109.47121 * 183.93557 * 25 24 23 41 41 H 1.08997 * 109.47733 * 303.94344 * 25 24 23 42 42 H 1.09003 * 109.46731 * 63.93732 * 25 24 23 43 43 H 1.08994 * 109.47795 * 78.17243 * 27 26 23 44 44 H 1.09005 * 109.46995 * 198.17521 * 27 26 23 45 45 H 1.08996 * 109.47392 * 318.16668 * 27 26 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 -0.8419 5 7 1.6523 2.0975 1.2517 6 6 0.4350 2.6645 1.3668 7 8 -0.3416 2.6319 0.4319 8 7 0.0782 3.2666 2.5186 9 6 -1.1421 3.9359 2.6066 10 6 -1.5599 4.4426 3.8276 11 6 -2.7927 5.1201 3.8919 12 6 -3.2670 5.6564 5.1129 13 1 -3.9605 6.4844 5.1057 14 6 -2.8371 5.1136 6.3299 15 7 -2.2418 3.9498 6.3527 16 14 -3.1142 6.0522 7.9211 17 1 -4.4274 5.6698 8.4991 18 1 -2.0339 5.7220 8.8851 19 1 -3.1012 7.5111 7.6437 20 6 -3.5419 5.2473 2.7022 21 6 -3.0482 4.7147 1.5454 22 7 -1.8874 4.0853 1.5214 23 6 3.5648 1.4444 -0.1257 24 8 4.1345 0.7378 0.9780 25 6 5.5075 1.0502 1.2218 26 8 3.9429 0.8055 -1.3467 27 6 5.3082 1.0142 -1.7133 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8899 30 1 -0.3634 0.5138 -0.8901 31 1 1.8933 -0.5139 -0.8899 32 1 1.8934 -0.5138 0.8900 33 1 2.2718 2.1233 1.9978 34 1 0.6702 3.2344 3.2863 35 1 -0.9518 4.3205 4.7118 36 1 -1.9437 3.5739 7.1957 37 1 -4.4930 5.7590 2.7066 38 1 -3.6183 4.8094 0.6330 39 1 3.9280 2.4721 -0.1262 40 1 5.8850 0.4229 2.0292 41 1 6.0880 0.8670 0.3176 42 1 5.5968 2.0991 1.5045 43 1 5.9476 0.3600 -1.1208 44 1 5.4387 0.7886 -2.7717 45 1 5.5796 2.0533 -1.5273 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000871737591.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:35:14 Heat of formation + Delta-G solvation = -74.340744 kcal Electronic energy + Delta-G solvation = -27796.495608 eV Core-core repulsion = 23815.044358 eV Total energy + Delta-G solvation = -3981.451250 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.26726 -39.38815 -38.04945 -36.27148 -35.50487 -34.15476 -33.70509 -31.85162 -30.47656 -29.59689 -28.37713 -26.54035 -26.30031 -25.95591 -23.35081 -22.21737 -21.81493 -20.53957 -20.05782 -18.25433 -17.75951 -17.46117 -17.33436 -16.49346 -15.65687 -15.47684 -15.22267 -14.79852 -14.61413 -14.35729 -14.17823 -14.01987 -13.85053 -13.45248 -13.29673 -13.05207 -12.79533 -12.61286 -12.58145 -12.40991 -12.09398 -11.71285 -11.44817 -11.20902 -11.17677 -10.87189 -10.83856 -10.51779 -10.30330 -10.26690 -10.10953 -10.10245 -9.70013 -9.49523 -9.32438 -8.71522 -7.94056 -7.69882 -6.97825 -6.77519 -4.59096 2.71816 2.77203 2.82809 3.01927 3.06464 3.26278 3.28663 3.68407 3.86018 3.92165 4.41264 4.52723 4.66568 4.72233 4.73739 4.88466 4.95293 5.04214 5.23217 5.30182 5.38579 5.43887 5.73214 5.74601 5.86163 6.00613 6.15679 6.28348 6.47164 6.57628 6.63443 6.64939 6.67234 6.82259 6.83243 6.87113 6.97493 7.13976 7.32985 7.46644 7.52097 7.88352 8.14435 8.42831 8.48858 8.75494 8.78047 9.22397 9.76262 10.09573 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.018985 B = 0.002832 C = 0.002606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1474.509386 B = 9884.432287 C =10742.587603 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.124 4.124 3 C 0.188 3.812 4 H 0.107 0.893 5 N -0.745 5.745 6 C 0.695 3.305 7 O -0.525 6.525 8 N -0.668 5.668 9 C 0.357 3.643 10 C -0.246 4.246 11 C 0.145 3.855 12 C -0.456 4.456 13 H 0.081 0.919 14 C 0.078 3.922 15 N -0.789 5.789 16 Si 0.911 3.089 17 H -0.269 1.269 18 H -0.276 1.276 19 H -0.260 1.260 20 C -0.285 4.285 21 C 0.120 3.880 22 N -0.553 5.553 23 C 0.239 3.761 24 O -0.386 6.386 25 C 0.010 3.990 26 O -0.384 6.384 27 C 0.022 3.978 28 H 0.040 0.960 29 H 0.061 0.939 30 H 0.059 0.941 31 H 0.072 0.928 32 H 0.066 0.934 33 H 0.394 0.606 34 H 0.403 0.597 35 H 0.127 0.873 36 H 0.281 0.719 37 H 0.101 0.899 38 H 0.122 0.878 39 H 0.061 0.939 40 H 0.089 0.911 41 H 0.053 0.947 42 H 0.044 0.956 43 H 0.052 0.948 44 H 0.087 0.913 45 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.421 -5.231 -6.777 18.518 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.162 4.162 3 C 0.081 3.919 4 H 0.125 0.875 5 N -0.405 5.405 6 C 0.395 3.605 7 O -0.395 6.395 8 N -0.316 5.316 9 C 0.131 3.869 10 C -0.272 4.272 11 C 0.136 3.864 12 C -0.487 4.487 13 H 0.099 0.901 14 C -0.141 4.141 15 N -0.415 5.415 16 Si 0.735 3.265 17 H -0.194 1.194 18 H -0.201 1.201 19 H -0.184 1.184 20 C -0.309 4.309 21 C -0.033 4.033 22 N -0.272 5.272 23 C 0.143 3.857 24 O -0.306 6.306 25 C -0.086 4.086 26 O -0.303 6.303 27 C -0.074 4.074 28 H 0.059 0.941 29 H 0.080 0.920 30 H 0.078 0.922 31 H 0.091 0.909 32 H 0.084 0.916 33 H 0.227 0.773 34 H 0.237 0.763 35 H 0.145 0.855 36 H 0.092 0.908 37 H 0.119 0.881 38 H 0.139 0.861 39 H 0.079 0.921 40 H 0.107 0.893 41 H 0.071 0.929 42 H 0.063 0.937 43 H 0.070 0.930 44 H 0.106 0.894 45 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 15.898 -6.041 -8.361 18.951 hybrid contribution 0.734 0.935 2.464 2.736 sum 16.632 -5.106 -5.896 18.370 Atomic orbital electron populations 1.21801 0.94507 1.00147 1.03634 1.21817 0.96893 0.95015 1.02520 1.20519 0.88054 0.95189 0.88094 0.87519 1.45050 1.16694 1.62332 1.16390 1.15942 0.81823 0.78822 0.83945 1.91022 1.50027 1.60918 1.37584 1.42551 1.20128 1.55452 1.13457 1.17926 0.85282 0.92926 0.90765 1.21501 0.99712 1.10823 0.95177 1.17553 0.89028 0.87518 0.92259 1.19559 1.24082 1.15443 0.89617 0.90050 1.25946 0.92809 0.94006 1.01372 1.69776 1.29027 1.13785 1.28877 0.86273 0.78877 0.81034 0.80332 1.19400 1.20073 1.18403 1.21659 1.02009 1.12117 0.95086 1.21463 0.91571 0.93925 0.96367 1.67181 1.08013 1.23133 1.28844 1.23640 0.93977 0.91407 0.76710 1.88077 1.25201 1.67891 1.49432 1.23204 0.82882 1.00738 1.01785 1.88028 1.27376 1.75236 1.39684 1.23073 0.82947 0.99898 1.01502 0.94078 0.91986 0.92192 0.90896 0.91561 0.77264 0.76262 0.85498 0.90792 0.88097 0.86076 0.92110 0.89252 0.92919 0.93739 0.92989 0.89446 0.93734 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.32 8.51 37.16 0.32 -2.00 16 2 C -0.12 -1.71 5.32 -26.73 -0.14 -1.85 16 3 C 0.19 2.53 2.39 -67.93 -0.16 2.37 16 4 H 0.11 1.62 7.58 -51.93 -0.39 1.22 16 5 N -0.75 -10.67 5.00 -58.68 -0.29 -10.97 16 6 C 0.69 13.28 7.08 -86.91 -0.62 12.66 16 7 O -0.52 -11.95 11.77 5.30 0.06 -11.89 16 8 N -0.67 -13.22 5.40 -15.86 -0.09 -13.30 16 9 C 0.36 8.69 7.40 -154.68 -1.15 7.54 16 10 C -0.25 -6.25 8.62 -38.46 -0.33 -6.58 16 11 C 0.14 3.82 5.60 -106.55 -0.60 3.22 16 12 C -0.46 -11.73 9.12 -37.65 -0.34 -12.07 16 13 H 0.08 2.00 7.89 -52.48 -0.41 1.59 16 14 C 0.08 1.87 5.23 -17.35 -0.09 1.78 16 15 N -0.79 -19.52 10.88 55.55 0.60 -18.91 16 16 Si 0.91 17.91 29.58 -169.99 -5.03 12.88 16 17 H -0.27 -5.26 7.11 56.52 0.40 -4.86 16 18 H -0.28 -5.28 7.11 56.52 0.40 -4.88 16 19 H -0.26 -5.09 7.11 56.52 0.40 -4.69 16 20 C -0.28 -7.04 9.85 -39.07 -0.38 -7.42 16 21 C 0.12 2.92 11.10 -18.04 -0.20 2.72 16 22 N -0.55 -14.17 7.90 -12.75 -0.10 -14.27 16 23 C 0.24 2.60 2.65 37.16 0.10 2.70 16 24 O -0.39 -4.07 9.51 -59.04 -0.56 -4.63 16 25 C 0.01 0.07 10.65 101.05 1.08 1.15 16 26 O -0.38 -4.18 9.85 -59.04 -0.58 -4.76 16 27 C 0.02 0.16 9.73 101.05 0.98 1.14 16 28 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.06 1.18 5.64 -51.94 -0.29 0.89 16 30 H 0.06 1.03 7.84 -51.92 -0.41 0.62 16 31 H 0.07 0.96 7.54 -51.93 -0.39 0.57 16 32 H 0.07 0.92 7.84 -51.93 -0.41 0.51 16 33 H 0.39 4.71 8.22 -40.82 -0.34 4.37 16 34 H 0.40 6.59 8.72 -40.82 -0.36 6.23 16 35 H 0.13 3.20 6.21 -52.49 -0.33 2.87 16 36 H 0.28 6.30 8.29 -40.82 -0.34 5.96 16 37 H 0.10 2.29 8.06 -52.49 -0.42 1.87 16 38 H 0.12 2.58 8.06 -52.48 -0.42 2.16 16 39 H 0.06 0.59 7.63 -51.93 -0.40 0.20 16 40 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 41 H 0.05 0.31 4.37 -51.93 -0.23 0.09 16 42 H 0.04 0.28 8.14 -51.93 -0.42 -0.15 16 43 H 0.05 0.32 5.92 -51.93 -0.31 0.02 16 44 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 45 H 0.04 0.26 7.77 -51.93 -0.40 -0.14 16 LS Contribution 364.62 15.07 5.49 5.49 Total: -1.00 -31.80 364.62 -8.36 -40.16 By element: Atomic # 1 Polarization: 21.17 SS G_CDS: -6.33 Total: 14.84 kcal Atomic # 6 Polarization: 6.89 SS G_CDS: -1.54 Total: 5.35 kcal Atomic # 7 Polarization: -57.57 SS G_CDS: 0.12 Total: -57.45 kcal Atomic # 8 Polarization: -20.20 SS G_CDS: -1.08 Total: -21.28 kcal Atomic # 14 Polarization: 17.91 SS G_CDS: -5.03 Total: 12.88 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -31.80 -8.36 -40.16 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871737591.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.185 kcal (2) G-P(sol) polarization free energy of solvation -31.797 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.983 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.358 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.155 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds