Wall clock time and date at job start Tue Mar 31 2020 13:35:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.46896 * 2 1 4 4 H 1.09003 * 109.46835 * 304.99931 * 3 2 1 5 5 N 1.46497 * 109.47177 * 64.99611 * 3 2 1 6 6 C 1.34779 * 120.00114 * 274.99767 * 5 3 2 7 7 O 1.21577 * 119.99944 * 0.02562 * 6 5 3 8 8 N 1.34779 * 119.99790 * 179.97438 * 6 5 3 9 9 C 1.39455 * 119.99804 * 175.41008 * 8 6 5 10 10 C 1.38644 * 119.64905 * 173.87232 * 9 8 6 11 11 C 1.40817 * 118.67652 * 179.71843 * 10 9 8 12 12 C 1.41541 * 120.99804 * 179.97438 * 11 10 9 13 13 H 1.08008 * 119.99568 * 155.06469 * 12 11 10 14 14 C 1.40029 * 120.00019 * 335.06456 * 12 11 10 15 15 N 1.30740 * 120.00192 * 345.12545 * 14 12 11 16 16 Si 1.86803 * 119.99807 * 165.12661 * 14 12 11 17 17 H 1.48493 * 109.47258 * 90.00059 * 16 14 12 18 18 H 1.48502 * 109.46722 * 210.00032 * 16 14 12 19 19 H 1.48506 * 109.46875 * 329.99630 * 16 14 12 20 20 C 1.41166 * 118.00519 * 0.02562 * 11 10 9 21 21 C 1.36591 * 119.12640 * 359.97438 * 20 11 10 22 22 N 1.32069 * 121.26078 * 0.02562 * 21 20 11 23 23 C 1.53001 * 109.47077 * 184.99895 * 3 2 1 24 24 O 1.42899 * 109.46793 * 299.99721 * 23 3 2 25 25 C 1.42905 * 113.99843 * 200.21924 * 24 23 3 26 26 O 1.42902 * 109.47086 * 59.99959 * 23 3 2 27 27 C 1.42897 * 113.99707 * 166.60780 * 26 23 3 28 28 H 1.09003 * 109.46691 * 179.97438 * 1 2 3 29 29 H 1.08989 * 109.47347 * 300.00190 * 1 2 3 30 30 H 1.09007 * 109.47130 * 60.00641 * 1 2 3 31 31 H 1.08998 * 109.47117 * 239.99810 * 2 1 3 32 32 H 1.09002 * 109.47160 * 119.99839 * 2 1 3 33 33 H 0.97005 * 120.00071 * 95.00318 * 5 3 2 34 34 H 0.96999 * 119.99834 * 355.41166 * 8 6 5 35 35 H 1.07999 * 120.66089 * 359.74574 * 10 9 8 36 36 H 0.96994 * 119.99988 * 179.97438 * 15 14 12 37 37 H 1.07996 * 120.44109 * 179.97438 * 20 11 10 38 38 H 1.08004 * 119.37377 * 179.97438 * 21 20 11 39 39 H 1.08998 * 109.46936 * 179.97438 * 23 3 2 40 40 H 1.08992 * 109.47121 * 183.93557 * 25 24 23 41 41 H 1.08997 * 109.47733 * 303.94344 * 25 24 23 42 42 H 1.09003 * 109.46731 * 63.93732 * 25 24 23 43 43 H 1.08994 * 109.47795 * 78.17243 * 27 26 23 44 44 H 1.09005 * 109.46995 * 198.17521 * 27 26 23 45 45 H 1.08996 * 109.47392 * 318.16668 * 27 26 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 -0.8419 5 7 1.6523 2.0975 1.2517 6 6 0.4350 2.6645 1.3668 7 8 -0.3416 2.6319 0.4319 8 7 0.0782 3.2666 2.5186 9 6 -1.1421 3.9359 2.6066 10 6 -1.5599 4.4426 3.8276 11 6 -2.7927 5.1201 3.8919 12 6 -3.2670 5.6564 5.1129 13 1 -3.9605 6.4844 5.1057 14 6 -2.8371 5.1136 6.3299 15 7 -2.2418 3.9498 6.3527 16 14 -3.1142 6.0522 7.9211 17 1 -4.4274 5.6698 8.4991 18 1 -2.0339 5.7220 8.8851 19 1 -3.1012 7.5111 7.6437 20 6 -3.5419 5.2473 2.7022 21 6 -3.0482 4.7147 1.5454 22 7 -1.8874 4.0853 1.5214 23 6 3.5648 1.4444 -0.1257 24 8 4.1345 0.7378 0.9780 25 6 5.5075 1.0502 1.2218 26 8 3.9429 0.8055 -1.3467 27 6 5.3082 1.0142 -1.7133 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8899 30 1 -0.3634 0.5138 -0.8901 31 1 1.8933 -0.5139 -0.8899 32 1 1.8934 -0.5138 0.8900 33 1 2.2718 2.1233 1.9978 34 1 0.6702 3.2344 3.2863 35 1 -0.9518 4.3205 4.7118 36 1 -1.9437 3.5739 7.1957 37 1 -4.4930 5.7590 2.7066 38 1 -3.6183 4.8094 0.6330 39 1 3.9280 2.4721 -0.1262 40 1 5.8850 0.4229 2.0292 41 1 6.0880 0.8670 0.3176 42 1 5.5968 2.0991 1.5045 43 1 5.9476 0.3600 -1.1208 44 1 5.4387 0.7886 -2.7717 45 1 5.5796 2.0533 -1.5273 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000871737591.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:35:14 Heat of formation + Delta-G solvation = -95.869687 kcal Electronic energy + Delta-G solvation = -27797.429173 eV Core-core repulsion = 23815.044358 eV Total energy + Delta-G solvation = -3982.384815 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.61946 -40.53932 -39.68639 -37.03171 -36.80329 -35.92757 -35.43708 -33.21147 -32.37675 -30.69140 -29.90184 -27.89545 -27.41935 -26.86554 -24.37799 -23.90467 -23.62557 -21.94266 -21.51396 -19.73172 -19.41047 -18.42067 -18.11181 -17.85247 -17.09088 -16.89387 -16.67026 -16.12063 -16.02915 -15.86035 -15.36204 -15.12314 -14.98028 -14.79014 -14.58003 -14.45199 -14.31649 -14.00127 -13.75153 -13.58022 -13.27359 -13.15751 -12.88006 -12.63355 -12.46007 -12.34637 -12.03334 -11.93380 -11.88259 -11.76691 -11.42776 -11.15975 -11.11742 -11.01258 -10.72523 -10.04424 -9.88758 -9.59020 -8.80938 -8.60786 -6.54163 0.87173 1.03253 1.42242 1.48457 1.54212 1.60290 2.21523 2.28448 2.50893 2.78049 2.86812 3.32285 3.60173 3.64799 3.79972 4.15039 4.20145 4.21406 4.24131 4.36780 4.47482 4.54999 4.57323 4.66997 4.76416 4.76635 4.87556 4.94525 4.96109 4.96893 5.06404 5.11863 5.19891 5.24777 5.48951 5.52693 5.53515 5.69565 5.85040 5.96042 6.00066 6.02930 6.29851 6.58851 6.82428 6.85034 7.00598 7.65746 7.92931 8.29321 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.018985 B = 0.002832 C = 0.002606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1474.509386 B = 9884.432287 C =10742.587603 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.113 4.113 3 C 0.184 3.816 4 H 0.088 0.912 5 N -0.723 5.723 6 C 0.695 3.305 7 O -0.563 6.563 8 N -0.662 5.662 9 C 0.356 3.644 10 C -0.262 4.262 11 C 0.116 3.884 12 C -0.485 4.485 13 H 0.084 0.916 14 C 0.039 3.961 15 N -0.813 5.813 16 Si 0.987 3.013 17 H -0.264 1.264 18 H -0.264 1.264 19 H -0.258 1.258 20 C -0.299 4.299 21 C 0.115 3.885 22 N -0.576 5.576 23 C 0.249 3.751 24 O -0.403 6.403 25 C 0.003 3.997 26 O -0.405 6.405 27 C 0.014 3.986 28 H 0.053 0.947 29 H 0.029 0.971 30 H 0.042 0.958 31 H 0.083 0.917 32 H 0.069 0.931 33 H 0.409 0.591 34 H 0.418 0.582 35 H 0.124 0.876 36 H 0.291 0.709 37 H 0.114 0.886 38 H 0.147 0.853 39 H 0.076 0.924 40 H 0.099 0.901 41 H 0.065 0.935 42 H 0.055 0.945 43 H 0.062 0.938 44 H 0.099 0.901 45 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.264 -5.329 -5.937 19.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.152 4.152 3 C 0.078 3.922 4 H 0.106 0.894 5 N -0.382 5.382 6 C 0.395 3.605 7 O -0.436 6.436 8 N -0.311 5.311 9 C 0.129 3.871 10 C -0.288 4.288 11 C 0.107 3.893 12 C -0.515 4.515 13 H 0.102 0.898 14 C -0.178 4.178 15 N -0.439 5.439 16 Si 0.807 3.193 17 H -0.189 1.189 18 H -0.188 1.188 19 H -0.182 1.182 20 C -0.323 4.323 21 C -0.038 4.038 22 N -0.296 5.296 23 C 0.153 3.847 24 O -0.323 6.323 25 C -0.093 4.093 26 O -0.325 6.325 27 C -0.081 4.081 28 H 0.072 0.928 29 H 0.048 0.952 30 H 0.061 0.939 31 H 0.102 0.898 32 H 0.088 0.912 33 H 0.245 0.755 34 H 0.255 0.745 35 H 0.142 0.858 36 H 0.102 0.898 37 H 0.132 0.868 38 H 0.164 0.836 39 H 0.093 0.907 40 H 0.118 0.882 41 H 0.084 0.916 42 H 0.073 0.927 43 H 0.081 0.919 44 H 0.117 0.883 45 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 17.815 -6.167 -7.518 20.296 hybrid contribution 0.223 0.881 2.152 2.336 sum 18.037 -5.286 -5.366 19.547 Atomic orbital electron populations 1.21693 0.96338 1.00153 1.01143 1.21717 0.94950 0.95400 1.03108 1.20544 0.90493 0.94432 0.86684 0.89373 1.44779 1.15125 1.60906 1.17384 1.16038 0.82714 0.78670 0.83101 1.90995 1.51557 1.62321 1.38723 1.42431 1.19138 1.54999 1.14530 1.18112 0.86287 0.92464 0.90244 1.21472 0.99866 1.12059 0.95440 1.17989 0.89803 0.88185 0.93290 1.19853 1.25110 1.16058 0.90500 0.89829 1.26816 0.92003 0.94571 1.04412 1.69813 1.28839 1.14773 1.30469 0.85128 0.79105 0.79348 0.75678 1.18866 1.18804 1.18194 1.21840 1.02652 1.12779 0.94980 1.21898 0.91489 0.93145 0.97283 1.67306 1.08802 1.24033 1.29457 1.23307 0.91873 0.92260 0.77254 1.88038 1.27079 1.68117 1.49103 1.23424 0.81262 1.01725 1.02858 1.87986 1.29546 1.75476 1.39467 1.23307 0.81244 1.01111 1.02460 0.92785 0.95168 0.93860 0.89806 0.91244 0.75520 0.74517 0.85848 0.89764 0.86753 0.83574 0.90706 0.88212 0.91642 0.92677 0.91937 0.88250 0.92356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.44 8.51 71.98 0.61 -3.83 16 2 C -0.11 -3.05 5.32 30.60 0.16 -2.88 16 3 C 0.18 4.85 2.39 44.99 0.11 4.95 16 4 H 0.09 2.70 7.58 -2.39 -0.02 2.68 16 5 N -0.72 -20.28 5.00 -457.81 -2.29 -22.57 16 6 C 0.69 26.81 7.08 179.05 1.27 28.08 16 7 O -0.56 -26.25 11.77 -3.96 -0.05 -26.30 16 8 N -0.66 -26.45 5.40 -322.37 -1.74 -28.19 16 9 C 0.36 17.69 7.40 132.76 0.98 18.68 16 10 C -0.26 -13.63 8.62 23.00 0.20 -13.44 16 11 C 0.12 6.24 5.60 -21.12 -0.12 6.12 16 12 C -0.48 -25.22 9.12 23.52 0.21 -25.01 16 13 H 0.08 4.16 7.89 -2.91 -0.02 4.14 16 14 C 0.04 1.86 5.23 85.29 0.45 2.31 16 15 N -0.81 -40.18 10.88 21.84 0.24 -39.94 16 16 Si 0.99 35.98 29.58 68.60 2.03 38.01 16 17 H -0.26 -9.38 7.11 99.48 0.71 -8.67 16 18 H -0.26 -9.04 7.11 99.48 0.71 -8.33 16 19 H -0.26 -9.27 7.11 99.48 0.71 -8.56 16 20 C -0.30 -15.04 9.85 22.60 0.22 -14.82 16 21 C 0.11 5.66 11.10 84.27 0.94 6.59 16 22 N -0.58 -30.12 7.90 -194.27 -1.53 -31.66 16 23 C 0.25 4.98 2.65 71.98 0.19 5.17 16 24 O -0.40 -7.57 9.51 -126.21 -1.20 -8.77 16 25 C 0.00 0.03 10.65 113.37 1.21 1.24 16 26 O -0.40 -8.05 9.85 -126.21 -1.24 -9.29 16 27 C 0.01 0.16 9.73 113.37 1.10 1.27 16 28 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 29 H 0.03 1.16 5.64 -2.39 -0.01 1.15 16 30 H 0.04 1.53 7.84 -2.38 -0.02 1.51 16 31 H 0.08 2.10 7.54 -2.39 -0.02 2.09 16 32 H 0.07 1.84 7.84 -2.39 -0.02 1.82 16 33 H 0.41 9.20 8.22 -92.70 -0.76 8.44 16 34 H 0.42 13.63 8.72 -92.71 -0.81 12.82 16 35 H 0.12 6.36 6.21 -2.91 -0.02 6.34 16 36 H 0.29 12.87 8.29 -92.71 -0.77 12.10 16 37 H 0.11 5.26 8.06 -2.91 -0.02 5.24 16 38 H 0.15 6.23 8.06 -2.91 -0.02 6.20 16 39 H 0.08 1.29 7.63 -2.39 -0.02 1.27 16 40 H 0.10 0.94 8.14 -2.39 -0.02 0.92 16 41 H 0.07 0.58 4.37 -2.39 -0.01 0.57 16 42 H 0.05 0.52 8.14 -2.39 -0.02 0.50 16 43 H 0.06 0.60 5.92 -2.39 -0.01 0.59 16 44 H 0.10 0.92 8.14 -2.38 -0.02 0.90 16 45 H 0.06 0.52 7.77 -2.39 -0.02 0.51 16 Total: -1.00 -69.74 364.62 1.21 -68.53 By element: Atomic # 1 Polarization: 46.30 SS G_CDS: -0.53 Total: 45.76 kcal Atomic # 6 Polarization: 6.89 SS G_CDS: 7.53 Total: 14.43 kcal Atomic # 7 Polarization: -117.04 SS G_CDS: -5.33 Total: -122.37 kcal Atomic # 8 Polarization: -41.87 SS G_CDS: -2.49 Total: -44.36 kcal Atomic # 14 Polarization: 35.98 SS G_CDS: 2.03 Total: 38.01 kcal Total: -69.74 1.21 -68.53 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871737591.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.341 kcal (2) G-P(sol) polarization free energy of solvation -69.742 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.084 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.214 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.528 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.870 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds