Wall clock time and date at job start Tue Mar 31 2020 13:35:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52990 * 109.47284 * 2 1 4 4 H 1.08998 * 109.47239 * 54.99665 * 3 2 1 5 5 N 1.46503 * 109.47138 * 294.99560 * 3 2 1 6 6 C 1.34775 * 119.99632 * 84.99820 * 5 3 2 7 7 O 1.21578 * 120.00613 * 0.02562 * 6 5 3 8 8 N 1.34780 * 119.99880 * 180.02562 * 6 5 3 9 9 C 1.39460 * 119.99886 * 184.82818 * 8 6 5 10 10 C 1.38649 * 119.64758 * 174.63484 * 9 8 6 11 11 C 1.40816 * 118.67526 * 179.97438 * 10 9 8 12 12 C 1.41549 * 120.99679 * 179.97438 * 11 10 9 13 13 H 1.08004 * 119.99516 * 211.24051 * 12 11 10 14 14 C 1.40024 * 119.99955 * 31.24045 * 12 11 10 15 15 N 1.30743 * 120.00319 * 0.57358 * 14 12 11 16 16 Si 1.86800 * 119.99718 * 180.57038 * 14 12 11 17 17 H 1.48502 * 109.47324 * 90.00612 * 16 14 12 18 18 H 1.48503 * 109.46946 * 210.00012 * 16 14 12 19 19 H 1.48495 * 109.47361 * 330.00046 * 16 14 12 20 20 C 1.41163 * 118.00474 * 359.97438 * 11 10 9 21 21 C 1.36592 * 119.12843 * 0.02562 * 20 11 10 22 22 N 1.32073 * 121.25849 * 359.73725 * 21 20 11 23 23 C 1.53003 * 109.47553 * 174.99786 * 3 2 1 24 24 O 1.42896 * 109.47478 * 179.97438 * 23 3 2 25 25 C 1.42902 * 113.99884 * 201.93368 * 24 23 3 26 26 O 1.42904 * 109.46872 * 300.00190 * 23 3 2 27 27 C 1.42896 * 113.99949 * 166.84757 * 26 23 3 28 28 H 1.09000 * 109.46764 * 60.00459 * 1 2 3 29 29 H 1.09006 * 109.47102 * 180.02562 * 1 2 3 30 30 H 1.08994 * 109.47394 * 300.00058 * 1 2 3 31 31 H 1.08996 * 109.47438 * 239.99158 * 2 1 3 32 32 H 1.09004 * 109.46978 * 119.99996 * 2 1 3 33 33 H 0.97003 * 120.00078 * 265.00285 * 5 3 2 34 34 H 0.97003 * 120.00102 * 5.09147 * 8 6 5 35 35 H 1.08006 * 120.65893 * 359.97438 * 10 9 8 36 36 H 0.97003 * 120.00338 * 179.97438 * 15 14 12 37 37 H 1.07996 * 120.43590 * 180.02562 * 20 11 10 38 38 H 1.07998 * 119.36760 * 179.97438 * 21 20 11 39 39 H 1.08998 * 109.46947 * 59.99699 * 23 3 2 40 40 H 1.08996 * 109.47567 * 65.54429 * 25 24 23 41 41 H 1.08997 * 109.46837 * 185.54952 * 25 24 23 42 42 H 1.08999 * 109.46807 * 305.54288 * 25 24 23 43 43 H 1.09006 * 109.47079 * 315.62458 * 27 26 23 44 44 H 1.08996 * 109.47370 * 75.62506 * 27 26 23 45 45 H 1.08999 * 109.47177 * 195.63242 * 27 26 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6053 1.9815 0.8418 5 7 1.6525 2.0974 -1.2519 6 6 0.4352 2.6642 -1.3671 7 8 -0.3412 2.6325 -0.4320 8 7 0.0785 3.2664 -2.5189 9 6 -1.1396 3.9399 -2.6055 10 6 -1.4502 4.6505 -3.7548 11 6 -2.6859 5.3225 -3.8205 12 6 -3.0528 6.0629 -4.9697 13 1 -3.6815 6.9357 -4.8718 14 6 -2.6008 5.6639 -6.2335 15 7 -1.8490 4.6009 -6.3533 16 14 -3.0720 6.6502 -7.7483 17 1 -2.0528 7.7027 -7.9905 18 1 -3.1403 5.7473 -8.9253 19 1 -4.3973 7.2845 -7.5335 20 6 -3.5477 5.2357 -2.7058 21 6 -3.1549 4.5112 -1.6165 22 7 -1.9900 3.8893 -1.5909 23 6 3.5648 1.4443 0.1258 24 8 4.0412 2.7915 0.1252 25 6 5.4124 2.9229 -0.2551 26 8 3.9428 0.8054 1.3469 27 6 5.3333 0.4867 1.4299 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8899 31 1 1.8934 -0.5139 -0.8899 32 1 1.8933 -0.5139 0.8900 33 1 2.2721 2.1230 -1.9978 34 1 0.6673 3.2280 -3.2889 35 1 -0.7581 4.6878 -4.5832 36 1 -1.5362 4.3242 -7.2288 37 1 -4.5050 5.7355 -2.7142 38 1 -3.8110 4.4425 -0.7615 39 1 3.9995 0.9052 -0.7160 40 1 5.5308 2.6252 -1.2969 41 1 5.7246 3.9604 -0.1360 42 1 6.0278 2.2835 0.3777 43 1 5.6629 0.0501 0.4870 44 1 5.9029 1.3944 1.6287 45 1 5.4948 -0.2278 2.2370 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000871737592.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:35:17 Heat of formation + Delta-G solvation = -72.964271 kcal Electronic energy + Delta-G solvation = -27789.869429 eV Core-core repulsion = 23808.477867 eV Total energy + Delta-G solvation = -3981.391562 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.23752 -39.35999 -38.05515 -36.25903 -35.59512 -34.11732 -33.67411 -31.89752 -30.43575 -29.61203 -28.36030 -26.57439 -26.28858 -25.93210 -23.18481 -22.24492 -21.79628 -20.69796 -20.08795 -18.24119 -17.71906 -17.45878 -17.35216 -16.54664 -15.66265 -15.35134 -15.22708 -14.73887 -14.67141 -14.36766 -14.14233 -14.02609 -13.85162 -13.58205 -13.19592 -13.06533 -12.86231 -12.74432 -12.54110 -12.28894 -11.99940 -11.69692 -11.38000 -11.28873 -11.18914 -10.95397 -10.87662 -10.65265 -10.29805 -10.23197 -10.09500 -10.07077 -9.64854 -9.47591 -9.36439 -8.72881 -7.86810 -7.68012 -6.97102 -6.65661 -4.59983 2.73310 2.75081 2.85296 3.04245 3.07750 3.27846 3.29828 3.67708 3.89412 3.94305 4.35742 4.58750 4.66531 4.75361 4.77815 4.88805 4.98239 5.04189 5.15506 5.24760 5.30517 5.45592 5.60130 5.71297 5.81968 5.97207 6.01639 6.15995 6.36483 6.57480 6.62709 6.66632 6.75746 6.76394 6.82123 6.84220 7.00534 7.19854 7.32459 7.46419 7.54704 7.93913 8.16425 8.44186 8.51231 8.77217 8.81763 9.24389 9.75894 10.17862 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.019142 B = 0.002824 C = 0.002623 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1462.418390 B = 9912.015247 C =10673.176095 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.126 4.126 3 C 0.185 3.815 4 H 0.105 0.895 5 N -0.742 5.742 6 C 0.696 3.304 7 O -0.523 6.523 8 N -0.668 5.668 9 C 0.353 3.647 10 C -0.237 4.237 11 C 0.142 3.858 12 C -0.457 4.457 13 H 0.080 0.920 14 C 0.073 3.927 15 N -0.804 5.804 16 Si 0.917 3.083 17 H -0.269 1.269 18 H -0.278 1.278 19 H -0.262 1.262 20 C -0.278 4.278 21 C 0.116 3.884 22 N -0.546 5.546 23 C 0.239 3.761 24 O -0.382 6.382 25 C 0.011 3.989 26 O -0.384 6.384 27 C 0.022 3.978 28 H 0.064 0.936 29 H 0.042 0.958 30 H 0.063 0.937 31 H 0.058 0.942 32 H 0.077 0.923 33 H 0.389 0.611 34 H 0.403 0.597 35 H 0.135 0.865 36 H 0.279 0.721 37 H 0.102 0.898 38 H 0.122 0.878 39 H 0.058 0.942 40 H 0.044 0.956 41 H 0.089 0.911 42 H 0.051 0.949 43 H 0.043 0.957 44 H 0.051 0.949 45 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.753 -8.141 5.993 18.718 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.165 4.165 3 C 0.078 3.922 4 H 0.123 0.877 5 N -0.401 5.401 6 C 0.396 3.604 7 O -0.394 6.394 8 N -0.316 5.316 9 C 0.127 3.873 10 C -0.262 4.262 11 C 0.133 3.867 12 C -0.489 4.489 13 H 0.098 0.902 14 C -0.143 4.143 15 N -0.431 5.431 16 Si 0.741 3.259 17 H -0.194 1.194 18 H -0.203 1.203 19 H -0.186 1.186 20 C -0.302 4.302 21 C -0.038 4.038 22 N -0.265 5.265 23 C 0.143 3.857 24 O -0.302 6.302 25 C -0.085 4.085 26 O -0.304 6.304 27 C -0.074 4.074 28 H 0.083 0.917 29 H 0.061 0.939 30 H 0.082 0.918 31 H 0.077 0.923 32 H 0.095 0.905 33 H 0.222 0.778 34 H 0.238 0.762 35 H 0.153 0.847 36 H 0.090 0.910 37 H 0.120 0.880 38 H 0.140 0.860 39 H 0.076 0.924 40 H 0.062 0.938 41 H 0.107 0.893 42 H 0.069 0.931 43 H 0.062 0.938 44 H 0.070 0.930 45 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 15.154 -8.700 7.700 19.095 hybrid contribution 0.795 0.676 -2.646 2.844 sum 15.948 -8.025 5.054 18.555 Atomic orbital electron populations 1.21764 0.93733 1.00302 1.04116 1.21899 0.97940 0.94567 1.02078 1.20405 0.88656 0.94530 0.88591 0.87728 1.44937 1.16503 1.62690 1.15926 1.15905 0.81746 0.78806 0.83917 1.91026 1.50092 1.60617 1.37628 1.42544 1.20285 1.55424 1.13304 1.18004 0.85083 0.92542 0.91686 1.21733 1.00020 1.07045 0.97431 1.17602 0.88883 0.88851 0.91357 1.19541 1.27616 1.11340 0.90389 0.90202 1.25908 0.93066 0.94400 1.00953 1.69720 1.26913 1.20607 1.25880 0.86173 0.80048 0.79854 0.79794 1.19407 1.20264 1.18612 1.21754 1.01146 1.09339 0.97933 1.21491 0.92151 0.93819 0.96344 1.67210 1.04507 1.26266 1.28468 1.23585 0.94808 0.80760 0.86541 1.88158 1.26211 1.27372 1.88474 1.23187 0.82946 1.03434 0.98914 1.88033 1.24885 1.77461 1.39979 1.23057 0.82267 1.00246 1.01844 0.91716 0.93877 0.91840 0.92332 0.90473 0.77838 0.76221 0.84737 0.91041 0.88016 0.86014 0.92433 0.93784 0.89251 0.93052 0.93815 0.93027 0.89365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.15 8.51 37.16 0.32 -1.83 16 2 C -0.13 -1.55 5.53 -26.74 -0.15 -1.70 16 3 C 0.18 2.49 2.30 -67.93 -0.16 2.34 16 4 H 0.10 1.74 7.58 -51.93 -0.39 1.35 16 5 N -0.74 -10.59 4.90 -58.68 -0.29 -10.87 16 6 C 0.70 13.42 7.09 -86.92 -0.62 12.80 16 7 O -0.52 -12.05 11.74 5.30 0.06 -11.98 16 8 N -0.67 -13.28 5.40 -15.86 -0.09 -13.37 16 9 C 0.35 8.64 7.42 -154.68 -1.15 7.50 16 10 C -0.24 -6.03 8.61 -38.46 -0.33 -6.36 16 11 C 0.14 3.75 5.59 -106.55 -0.60 3.16 16 12 C -0.46 -11.84 9.13 -37.65 -0.34 -12.18 16 13 H 0.08 1.98 7.85 -52.48 -0.41 1.57 16 14 C 0.07 1.79 5.41 -17.35 -0.09 1.69 16 15 N -0.80 -19.91 10.62 55.55 0.59 -19.32 16 16 Si 0.92 18.24 29.56 -169.99 -5.02 13.21 16 17 H -0.27 -5.26 7.11 56.52 0.40 -4.86 16 18 H -0.28 -5.42 7.11 56.52 0.40 -5.02 16 19 H -0.26 -5.19 7.11 56.52 0.40 -4.79 16 20 C -0.28 -6.89 9.85 -39.07 -0.38 -7.27 16 21 C 0.12 2.82 11.10 -18.04 -0.20 2.62 16 22 N -0.55 -14.07 7.86 -12.75 -0.10 -14.17 16 23 C 0.24 2.65 2.42 37.16 0.09 2.74 16 24 O -0.38 -4.67 10.44 -59.04 -0.62 -5.29 16 25 C 0.01 0.09 10.67 101.05 1.08 1.17 16 26 O -0.38 -4.23 9.85 -59.04 -0.58 -4.82 16 27 C 0.02 0.16 9.77 101.05 0.99 1.14 16 28 H 0.06 1.17 5.64 -51.93 -0.29 0.88 16 29 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.06 1.06 7.84 -51.93 -0.41 0.65 16 31 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 32 H 0.08 0.87 7.54 -51.93 -0.39 0.48 16 33 H 0.39 4.40 8.62 -40.82 -0.35 4.04 16 34 H 0.40 6.63 8.72 -40.82 -0.36 6.27 16 35 H 0.14 3.42 6.15 -52.48 -0.32 3.10 16 36 H 0.28 6.28 8.29 -40.82 -0.34 5.94 16 37 H 0.10 2.31 8.06 -52.49 -0.42 1.89 16 38 H 0.12 2.60 8.06 -52.49 -0.42 2.18 16 39 H 0.06 0.51 7.64 -51.93 -0.40 0.11 16 40 H 0.04 0.29 8.14 -51.93 -0.42 -0.13 16 41 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 42 H 0.05 0.33 4.41 -51.93 -0.23 0.11 16 43 H 0.04 0.24 7.83 -51.93 -0.41 -0.17 16 44 H 0.05 0.34 5.90 -51.93 -0.31 0.04 16 45 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 LS Contribution 365.90 15.07 5.51 5.51 Total: -1.00 -32.53 365.90 -8.43 -40.96 By element: Atomic # 1 Polarization: 20.69 SS G_CDS: -6.36 Total: 14.33 kcal Atomic # 6 Polarization: 7.35 SS G_CDS: -1.55 Total: 5.81 kcal Atomic # 7 Polarization: -57.86 SS G_CDS: 0.12 Total: -57.74 kcal Atomic # 8 Polarization: -20.95 SS G_CDS: -1.14 Total: -22.09 kcal Atomic # 14 Polarization: 18.24 SS G_CDS: -5.02 Total: 13.21 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -32.53 -8.43 -40.96 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871737592.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.002 kcal (2) G-P(sol) polarization free energy of solvation -32.529 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.530 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.963 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.964 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds