Wall clock time and date at job start Tue Mar 31 2020 13:35:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52990 * 109.47284 * 2 1 4 4 H 1.08998 * 109.47239 * 54.99665 * 3 2 1 5 5 N 1.46503 * 109.47138 * 294.99560 * 3 2 1 6 6 C 1.34775 * 119.99632 * 84.99820 * 5 3 2 7 7 O 1.21578 * 120.00613 * 0.02562 * 6 5 3 8 8 N 1.34780 * 119.99880 * 180.02562 * 6 5 3 9 9 C 1.39460 * 119.99886 * 184.82818 * 8 6 5 10 10 C 1.38649 * 119.64758 * 174.63484 * 9 8 6 11 11 C 1.40816 * 118.67526 * 179.97438 * 10 9 8 12 12 C 1.41549 * 120.99679 * 179.97438 * 11 10 9 13 13 H 1.08004 * 119.99516 * 211.24051 * 12 11 10 14 14 C 1.40024 * 119.99955 * 31.24045 * 12 11 10 15 15 N 1.30743 * 120.00319 * 0.57358 * 14 12 11 16 16 Si 1.86800 * 119.99718 * 180.57038 * 14 12 11 17 17 H 1.48502 * 109.47324 * 90.00612 * 16 14 12 18 18 H 1.48503 * 109.46946 * 210.00012 * 16 14 12 19 19 H 1.48495 * 109.47361 * 330.00046 * 16 14 12 20 20 C 1.41163 * 118.00474 * 359.97438 * 11 10 9 21 21 C 1.36592 * 119.12843 * 0.02562 * 20 11 10 22 22 N 1.32073 * 121.25849 * 359.73725 * 21 20 11 23 23 C 1.53003 * 109.47553 * 174.99786 * 3 2 1 24 24 O 1.42896 * 109.47478 * 179.97438 * 23 3 2 25 25 C 1.42902 * 113.99884 * 201.93368 * 24 23 3 26 26 O 1.42904 * 109.46872 * 300.00190 * 23 3 2 27 27 C 1.42896 * 113.99949 * 166.84757 * 26 23 3 28 28 H 1.09000 * 109.46764 * 60.00459 * 1 2 3 29 29 H 1.09006 * 109.47102 * 180.02562 * 1 2 3 30 30 H 1.08994 * 109.47394 * 300.00058 * 1 2 3 31 31 H 1.08996 * 109.47438 * 239.99158 * 2 1 3 32 32 H 1.09004 * 109.46978 * 119.99996 * 2 1 3 33 33 H 0.97003 * 120.00078 * 265.00285 * 5 3 2 34 34 H 0.97003 * 120.00102 * 5.09147 * 8 6 5 35 35 H 1.08006 * 120.65893 * 359.97438 * 10 9 8 36 36 H 0.97003 * 120.00338 * 179.97438 * 15 14 12 37 37 H 1.07996 * 120.43590 * 180.02562 * 20 11 10 38 38 H 1.07998 * 119.36760 * 179.97438 * 21 20 11 39 39 H 1.08998 * 109.46947 * 59.99699 * 23 3 2 40 40 H 1.08996 * 109.47567 * 65.54429 * 25 24 23 41 41 H 1.08997 * 109.46837 * 185.54952 * 25 24 23 42 42 H 1.08999 * 109.46807 * 305.54288 * 25 24 23 43 43 H 1.09006 * 109.47079 * 315.62458 * 27 26 23 44 44 H 1.08996 * 109.47370 * 75.62506 * 27 26 23 45 45 H 1.08999 * 109.47177 * 195.63242 * 27 26 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6053 1.9815 0.8418 5 7 1.6525 2.0974 -1.2519 6 6 0.4352 2.6642 -1.3671 7 8 -0.3412 2.6325 -0.4320 8 7 0.0785 3.2664 -2.5189 9 6 -1.1396 3.9399 -2.6055 10 6 -1.4502 4.6505 -3.7548 11 6 -2.6859 5.3225 -3.8205 12 6 -3.0528 6.0629 -4.9697 13 1 -3.6815 6.9357 -4.8718 14 6 -2.6008 5.6639 -6.2335 15 7 -1.8490 4.6009 -6.3533 16 14 -3.0720 6.6502 -7.7483 17 1 -2.0528 7.7027 -7.9905 18 1 -3.1403 5.7473 -8.9253 19 1 -4.3973 7.2845 -7.5335 20 6 -3.5477 5.2357 -2.7058 21 6 -3.1549 4.5112 -1.6165 22 7 -1.9900 3.8893 -1.5909 23 6 3.5648 1.4443 0.1258 24 8 4.0412 2.7915 0.1252 25 6 5.4124 2.9229 -0.2551 26 8 3.9428 0.8054 1.3469 27 6 5.3333 0.4867 1.4299 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8899 31 1 1.8934 -0.5139 -0.8899 32 1 1.8933 -0.5139 0.8900 33 1 2.2721 2.1230 -1.9978 34 1 0.6673 3.2280 -3.2889 35 1 -0.7581 4.6878 -4.5832 36 1 -1.5362 4.3242 -7.2288 37 1 -4.5050 5.7355 -2.7142 38 1 -3.8110 4.4425 -0.7615 39 1 3.9995 0.9052 -0.7160 40 1 5.5308 2.6252 -1.2969 41 1 5.7246 3.9604 -0.1360 42 1 6.0278 2.2835 0.3777 43 1 5.6629 0.0501 0.4870 44 1 5.9029 1.3944 1.6287 45 1 5.4948 -0.2278 2.2370 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000871737592.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:35:17 Heat of formation + Delta-G solvation = -95.556048 kcal Electronic energy + Delta-G solvation = -27790.849081 eV Core-core repulsion = 23808.477867 eV Total energy + Delta-G solvation = -3982.371215 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.60470 -40.51988 -39.69132 -37.02543 -36.90151 -35.90523 -35.42671 -33.20694 -32.34703 -30.68909 -29.89477 -27.88226 -27.47753 -26.88061 -24.16834 -23.88303 -23.62493 -22.01365 -21.62213 -19.70748 -19.42343 -18.34882 -18.21576 -17.86920 -17.12002 -16.95946 -16.53766 -16.11020 -16.00164 -15.79713 -15.35775 -15.12455 -15.08859 -14.69288 -14.60568 -14.49200 -14.30847 -14.05445 -13.87683 -13.58677 -13.14322 -12.98780 -12.84540 -12.67902 -12.54028 -12.27997 -12.09086 -11.97241 -11.85448 -11.77332 -11.39200 -11.16639 -11.15796 -11.00493 -10.73107 -10.04801 -9.82621 -9.58569 -8.81295 -8.50251 -6.56292 0.86100 1.04205 1.42727 1.48554 1.54162 1.59702 2.23181 2.33762 2.46061 2.77293 2.90402 3.33235 3.58727 3.76139 3.80495 4.09481 4.15756 4.19223 4.24847 4.38325 4.44188 4.50427 4.55841 4.67887 4.74692 4.76710 4.87857 4.91772 4.94526 4.96535 5.03782 5.12932 5.16454 5.29393 5.49355 5.52601 5.53485 5.69754 5.86391 6.01196 6.03268 6.05216 6.30404 6.59887 6.82660 6.87777 7.01504 7.66819 7.92613 8.35764 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.019142 B = 0.002824 C = 0.002623 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1462.418390 B = 9912.015247 C =10673.176095 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.115 4.115 3 C 0.182 3.818 4 H 0.065 0.935 5 N -0.719 5.719 6 C 0.695 3.305 7 O -0.564 6.564 8 N -0.661 5.661 9 C 0.352 3.648 10 C -0.252 4.252 11 C 0.112 3.888 12 C -0.486 4.486 13 H 0.081 0.919 14 C 0.034 3.966 15 N -0.825 5.825 16 Si 0.991 3.009 17 H -0.261 1.261 18 H -0.268 1.268 19 H -0.261 1.261 20 C -0.291 4.291 21 C 0.110 3.890 22 N -0.571 5.571 23 C 0.247 3.753 24 O -0.415 6.415 25 C 0.004 3.996 26 O -0.406 6.406 27 C 0.014 3.986 28 H 0.031 0.969 29 H 0.060 0.940 30 H 0.037 0.963 31 H 0.083 0.917 32 H 0.092 0.908 33 H 0.407 0.593 34 H 0.418 0.582 35 H 0.131 0.869 36 H 0.289 0.711 37 H 0.116 0.884 38 H 0.147 0.853 39 H 0.091 0.909 40 H 0.061 0.939 41 H 0.090 0.910 42 H 0.068 0.932 43 H 0.065 0.935 44 H 0.055 0.945 45 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.687 -8.976 4.719 20.388 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.154 4.154 3 C 0.076 3.924 4 H 0.084 0.916 5 N -0.378 5.378 6 C 0.395 3.605 7 O -0.437 6.437 8 N -0.310 5.310 9 C 0.125 3.875 10 C -0.278 4.278 11 C 0.104 3.896 12 C -0.517 4.517 13 H 0.100 0.900 14 C -0.181 4.181 15 N -0.452 5.452 16 Si 0.812 3.188 17 H -0.185 1.185 18 H -0.193 1.193 19 H -0.185 1.185 20 C -0.314 4.314 21 C -0.043 4.043 22 N -0.290 5.290 23 C 0.151 3.849 24 O -0.336 6.336 25 C -0.091 4.091 26 O -0.327 6.327 27 C -0.081 4.081 28 H 0.050 0.950 29 H 0.079 0.921 30 H 0.056 0.944 31 H 0.102 0.898 32 H 0.111 0.889 33 H 0.243 0.757 34 H 0.256 0.744 35 H 0.149 0.851 36 H 0.100 0.900 37 H 0.134 0.866 38 H 0.164 0.836 39 H 0.108 0.892 40 H 0.080 0.920 41 H 0.109 0.891 42 H 0.087 0.913 43 H 0.084 0.916 44 H 0.073 0.927 45 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 17.168 -9.566 6.423 20.677 hybrid contribution 0.266 0.883 -2.185 2.372 sum 17.435 -8.683 4.238 19.933 Atomic orbital electron populations 1.21661 0.96062 1.00446 1.01180 1.21822 0.95583 0.94018 1.03971 1.20447 0.90993 0.94482 0.86487 0.91643 1.44649 1.14921 1.61241 1.17010 1.16028 0.82754 0.78677 0.83049 1.91000 1.51759 1.62100 1.38831 1.42423 1.19276 1.54967 1.14374 1.18194 0.86101 0.92181 0.91064 1.21695 1.00058 1.08246 0.97798 1.18038 0.89664 0.89587 0.92314 1.19818 1.28734 1.11861 0.91334 0.90043 1.26788 0.92568 0.95229 1.03505 1.69764 1.26800 1.21300 1.27304 0.85055 0.79726 0.78357 0.75663 1.18513 1.19274 1.18480 1.21928 1.01723 1.09931 0.97852 1.21922 0.92213 0.93145 0.97046 1.67338 1.05311 1.27186 1.29184 1.23405 0.92724 0.80984 0.87819 1.88110 1.28456 1.28113 1.88959 1.23405 0.81253 1.04139 1.00334 1.87995 1.27213 1.77427 1.40019 1.23300 0.80318 1.00921 1.03608 0.94963 0.92096 0.94426 0.89829 0.88941 0.75688 0.74444 0.85110 0.90040 0.86610 0.83577 0.89191 0.92025 0.89127 0.91349 0.91648 0.92715 0.88031 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.16 8.51 71.98 0.61 -3.54 16 2 C -0.12 -2.67 5.53 30.59 0.17 -2.50 16 3 C 0.18 4.80 2.30 44.99 0.10 4.91 16 4 H 0.07 2.27 7.58 -2.39 -0.02 2.25 16 5 N -0.72 -20.09 4.90 -457.83 -2.24 -22.33 16 6 C 0.70 27.25 7.09 179.05 1.27 28.52 16 7 O -0.56 -26.95 11.74 -3.96 -0.05 -26.99 16 8 N -0.66 -26.69 5.40 -322.36 -1.74 -28.43 16 9 C 0.35 17.68 7.42 132.76 0.98 18.66 16 10 C -0.25 -13.19 8.61 23.00 0.20 -13.00 16 11 C 0.11 6.10 5.59 -21.11 -0.12 5.98 16 12 C -0.49 -25.51 9.13 23.52 0.21 -25.29 16 13 H 0.08 4.10 7.85 -2.91 -0.02 4.07 16 14 C 0.03 1.64 5.41 85.29 0.46 2.10 16 15 N -0.82 -40.74 10.62 21.84 0.23 -40.50 16 16 Si 0.99 36.61 29.56 68.60 2.03 38.64 16 17 H -0.26 -9.24 7.11 99.48 0.71 -8.53 16 18 H -0.27 -9.44 7.11 99.48 0.71 -8.73 16 19 H -0.26 -9.52 7.11 99.48 0.71 -8.81 16 20 C -0.29 -14.72 9.85 22.60 0.22 -14.50 16 21 C 0.11 5.47 11.10 84.27 0.94 6.40 16 22 N -0.57 -30.23 7.86 -194.26 -1.53 -31.75 16 23 C 0.25 4.94 2.42 71.98 0.17 5.12 16 24 O -0.42 -9.55 10.44 -126.21 -1.32 -10.87 16 25 C 0.00 0.05 10.67 113.37 1.21 1.26 16 26 O -0.41 -8.12 9.85 -126.21 -1.24 -9.37 16 27 C 0.01 0.16 9.77 113.37 1.11 1.26 16 28 H 0.03 1.18 5.64 -2.39 -0.01 1.17 16 29 H 0.06 1.58 8.14 -2.38 -0.02 1.56 16 30 H 0.04 1.31 7.84 -2.39 -0.02 1.29 16 31 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 32 H 0.09 1.91 7.54 -2.38 -0.02 1.89 16 33 H 0.41 8.47 8.62 -92.71 -0.80 7.67 16 34 H 0.42 13.73 8.72 -92.71 -0.81 12.92 16 35 H 0.13 6.81 6.15 -2.91 -0.02 6.79 16 36 H 0.29 12.79 8.29 -92.71 -0.77 12.02 16 37 H 0.12 5.35 8.06 -2.91 -0.02 5.32 16 38 H 0.15 6.31 8.06 -2.91 -0.02 6.29 16 39 H 0.09 1.22 7.64 -2.39 -0.02 1.20 16 40 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 41 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 42 H 0.07 0.69 4.41 -2.39 -0.01 0.68 16 43 H 0.06 0.46 7.83 -2.38 -0.02 0.44 16 44 H 0.05 0.58 5.90 -2.39 -0.01 0.57 16 45 H 0.10 0.87 8.14 -2.39 -0.02 0.85 16 Total: -1.00 -73.10 365.90 1.12 -71.98 By element: Atomic # 1 Polarization: 44.80 SS G_CDS: -0.57 Total: 44.23 kcal Atomic # 6 Polarization: 7.85 SS G_CDS: 7.55 Total: 15.40 kcal Atomic # 7 Polarization: -117.74 SS G_CDS: -5.28 Total: -123.02 kcal Atomic # 8 Polarization: -44.62 SS G_CDS: -2.61 Total: -47.23 kcal Atomic # 14 Polarization: 36.61 SS G_CDS: 2.03 Total: 38.64 kcal Total: -73.10 1.12 -71.98 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871737592.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.580 kcal (2) G-P(sol) polarization free energy of solvation -73.096 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.676 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.976 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.556 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds