Wall clock time and date at job start Tue Mar 31 2020 14:42:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42902 * 109.47538 * 2 1 4 4 N 1.41600 * 114.00173 * 179.97438 * 3 2 1 5 5 C 1.46496 * 120.00143 * 269.99788 * 4 3 2 6 6 C 1.53000 * 109.47210 * 255.00185 * 5 4 3 7 7 C 1.34776 * 119.99868 * 89.99996 * 4 3 2 8 8 O 1.21589 * 120.00100 * 180.02562 * 7 4 3 9 9 N 1.34775 * 120.00018 * 359.97438 * 7 4 3 10 10 C 1.39594 * 119.99902 * 179.97438 * 9 7 4 11 11 N 1.32268 * 119.72347 * 0.29564 * 10 9 7 12 12 C 1.31970 * 121.68397 * 180.28583 * 11 10 9 13 13 C 1.38074 * 120.95656 * 359.70589 * 12 11 10 14 14 C 1.38794 * 119.35179 * 359.97438 * 13 12 11 15 15 C 1.38781 * 118.44773 * 359.97438 * 14 13 12 16 16 O 1.35983 * 120.49767 * 179.97438 * 15 14 13 17 17 C 1.42906 * 116.99537 * 0.02562 * 16 15 14 18 18 C 1.53006 * 109.46748 * 179.97438 * 17 16 15 19 19 C 1.50699 * 109.46866 * 179.97438 * 18 17 16 20 20 H 1.08003 * 119.99962 * 359.97438 * 19 18 17 21 21 C 1.37874 * 120.00270 * 180.02562 * 19 18 17 22 22 N 1.31522 * 119.99834 * 359.97438 * 21 19 18 23 23 Si 1.86793 * 120.00496 * 180.02562 * 21 19 18 24 24 H 1.48494 * 109.47325 * 59.99531 * 23 21 19 25 25 H 1.48496 * 109.47425 * 179.97438 * 23 21 19 26 26 H 1.48505 * 109.47183 * 299.99726 * 23 21 19 27 27 H 1.08997 * 109.47408 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47173 * 300.00958 * 1 2 3 29 29 H 1.09006 * 109.46345 * 60.00061 * 1 2 3 30 30 H 1.09002 * 109.47495 * 239.99871 * 2 1 3 31 31 H 1.08999 * 109.46954 * 120.00204 * 2 1 3 32 32 H 1.09007 * 109.46853 * 14.99825 * 5 4 3 33 33 H 1.09000 * 109.47308 * 134.99942 * 5 4 3 34 34 H 1.08998 * 109.46894 * 179.97438 * 6 5 4 35 35 H 1.09000 * 109.46848 * 299.99989 * 6 5 4 36 36 H 1.09000 * 109.47184 * 59.99681 * 6 5 4 37 37 H 0.97000 * 120.00172 * 0.02562 * 9 7 4 38 38 H 1.08000 * 119.52522 * 179.72561 * 12 11 10 39 39 H 1.07997 * 120.32400 * 179.97438 * 13 12 11 40 40 H 1.07993 * 120.77632 * 180.02562 * 14 13 12 41 41 H 1.09000 * 109.47490 * 59.99651 * 17 16 15 42 42 H 1.09001 * 109.47232 * 299.99005 * 17 16 15 43 43 H 1.08993 * 109.46955 * 299.99993 * 18 17 16 44 44 H 1.09000 * 109.47050 * 59.99822 * 18 17 16 45 45 H 0.96992 * 120.00032 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 7 3.4180 1.4590 0.0006 5 6 4.1477 1.5171 1.2695 6 6 4.6141 2.9517 1.5245 7 6 4.0903 1.5120 -1.1664 8 8 5.3024 1.6075 -1.1659 9 7 3.4190 1.4581 -2.3338 10 6 4.1153 1.5136 -3.5424 11 7 5.4342 1.6131 -3.5355 12 6 6.1306 1.6739 -4.6549 13 6 5.5040 1.6296 -5.8845 14 6 4.1216 1.5190 -5.9400 15 6 3.4150 1.4559 -4.7472 16 8 2.0595 1.3476 -4.7530 17 6 1.4177 1.3029 -6.0291 18 6 -0.0950 1.1804 -5.8351 19 6 -0.7718 1.1339 -7.1807 20 1 -0.1820 1.1868 -8.0839 21 6 -2.1440 1.0248 -7.2589 22 7 -2.8623 0.9608 -6.1590 23 14 -2.9830 0.9663 -8.9268 24 1 -2.4858 -0.2063 -9.6902 25 1 -4.4511 0.8476 -8.7386 26 1 -2.6788 2.2109 -9.6778 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5140 0.8899 29 1 -0.3632 0.5139 -0.8901 30 1 1.8934 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 3.4924 1.1986 2.0804 33 1 5.0135 0.8566 1.2214 34 1 5.1566 2.9950 2.4689 35 1 5.2693 3.2702 0.7137 36 1 3.7483 3.6122 1.5727 37 1 2.4520 1.3816 -2.3342 38 1 7.2062 1.7593 -4.6085 39 1 6.0839 1.6806 -6.7941 40 1 3.6079 1.4820 -6.8892 41 1 1.7827 0.4421 -6.5894 42 1 1.6408 2.2165 -6.5802 43 1 -0.3178 0.2668 -5.2841 44 1 -0.4603 2.0409 -5.2746 45 1 -3.8276 0.8837 -6.2139 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000879240158.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:42:33 Heat of formation + Delta-G solvation = -18.052389 kcal Electronic energy + Delta-G solvation = -27694.561340 eV Core-core repulsion = 23715.550936 eV Total energy + Delta-G solvation = -3979.010404 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.94661 -39.72729 -37.91470 -37.46740 -35.20538 -34.05275 -33.46344 -31.70711 -31.38666 -30.59606 -29.56380 -28.53057 -25.41842 -24.34953 -23.25334 -23.00996 -22.45637 -20.97582 -20.37524 -19.09656 -18.28255 -17.57560 -16.46651 -16.23836 -16.12327 -16.02883 -15.57931 -15.18482 -14.90744 -14.62949 -14.59657 -14.41345 -14.10334 -13.90167 -13.52873 -12.95319 -12.83466 -12.71099 -12.39580 -12.31285 -12.13704 -12.00085 -11.91205 -11.71620 -11.26944 -11.07190 -10.97518 -10.70967 -10.68568 -10.66747 -10.20666 -10.03509 -9.77537 -9.42367 -9.26345 -9.08105 -9.05318 -8.51462 -7.62070 -6.17423 -4.22352 1.26605 1.47526 1.63052 2.89849 3.13440 3.23983 3.28718 3.29745 3.55181 4.05658 4.33064 4.35073 4.72390 4.83012 4.85260 4.95163 4.97499 5.06899 5.09970 5.16682 5.19324 5.23424 5.27344 5.47669 5.49590 5.67848 5.72929 5.78615 5.87161 5.91368 6.03947 6.07359 6.12399 6.20271 6.36012 6.38630 6.55515 6.59920 6.83501 7.36100 7.53589 7.61290 7.69281 7.87940 8.14894 8.21133 8.50738 8.82537 9.42425 10.93923 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.011584 B = 0.003469 C = 0.002739 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2416.484711 B = 8069.744748 C =10219.634412 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.019 3.981 3 O -0.145 6.145 4 N -0.495 5.495 5 C 0.138 3.862 6 C -0.169 4.169 7 C 0.708 3.292 8 O -0.517 6.517 9 N -0.655 5.655 10 C 0.344 3.656 11 N -0.443 5.443 12 C 0.077 3.923 13 C -0.162 4.162 14 C -0.146 4.146 15 C 0.067 3.933 16 O -0.316 6.316 17 C 0.066 3.934 18 C 0.028 3.972 19 C -0.529 4.529 20 H 0.058 0.942 21 C 0.062 3.938 22 N -0.889 5.889 23 Si 0.899 3.101 24 H -0.275 1.275 25 H -0.285 1.285 26 H -0.275 1.275 27 H 0.079 0.921 28 H 0.065 0.935 29 H 0.075 0.925 30 H 0.059 0.941 31 H 0.058 0.942 32 H 0.086 0.914 33 H 0.083 0.917 34 H 0.068 0.932 35 H 0.068 0.932 36 H 0.059 0.941 37 H 0.425 0.575 38 H 0.157 0.843 39 H 0.134 0.866 40 H 0.145 0.855 41 H 0.052 0.948 42 H 0.052 0.948 43 H 0.028 0.972 44 H 0.028 0.972 45 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.104 -0.680 11.889 17.706 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.059 4.059 3 O -0.150 6.150 4 N -0.279 5.279 5 C 0.017 3.983 6 C -0.228 4.228 7 C 0.410 3.590 8 O -0.388 6.388 9 N -0.305 5.305 10 C 0.110 3.890 11 N -0.158 5.158 12 C -0.080 4.080 13 C -0.183 4.183 14 C -0.173 4.173 15 C 0.015 3.985 16 O -0.228 6.228 17 C -0.008 4.008 18 C -0.010 4.010 19 C -0.567 4.567 20 H 0.076 0.924 21 C -0.140 4.140 22 N -0.526 5.526 23 Si 0.726 3.274 24 H -0.201 1.201 25 H -0.211 1.211 26 H -0.201 1.201 27 H 0.098 0.902 28 H 0.084 0.916 29 H 0.094 0.906 30 H 0.077 0.923 31 H 0.076 0.924 32 H 0.104 0.896 33 H 0.101 0.899 34 H 0.087 0.913 35 H 0.088 0.912 36 H 0.078 0.922 37 H 0.263 0.737 38 H 0.174 0.826 39 H 0.152 0.848 40 H 0.163 0.837 41 H 0.070 0.930 42 H 0.071 0.929 43 H 0.046 0.954 44 H 0.047 0.953 45 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 13.958 -0.443 13.007 19.084 hybrid contribution -1.618 -0.393 -1.963 2.574 sum 12.340 -0.836 11.044 16.581 Atomic orbital electron populations 1.21748 0.91622 1.03378 1.03981 1.23166 0.96460 0.84877 1.01365 1.90692 1.01905 1.25683 1.96750 1.49501 0.94766 1.78168 1.05425 1.21527 0.95467 0.98620 0.82654 1.22157 1.02036 0.96186 1.02398 1.15873 0.84952 0.78612 0.79539 1.91066 1.09728 1.54263 1.83768 1.42516 1.11301 1.74322 1.02347 1.17512 0.88209 1.00558 0.82682 1.67603 1.03839 1.13555 1.30840 1.22405 0.99905 0.98975 0.86708 1.21885 0.94278 1.02700 0.99471 1.21590 0.94955 1.03150 0.97581 1.19534 0.85311 1.00799 0.92886 1.86116 1.14084 1.87163 1.35484 1.23396 0.96634 0.99810 0.80969 1.19113 0.84911 0.98763 0.98177 1.20910 0.91885 1.52214 0.91680 0.92404 1.24972 0.97356 0.94813 0.96908 1.69953 1.06344 1.49158 1.27191 0.86547 0.78362 0.78749 0.83730 1.20089 1.21091 1.20062 0.90184 0.91596 0.90604 0.92293 0.92366 0.89558 0.89923 0.91292 0.91249 0.92151 0.73672 0.82599 0.84776 0.83700 0.92966 0.92926 0.95412 0.95338 0.92607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.45 10.28 37.16 0.38 -1.07 16 2 C 0.02 0.21 7.04 37.16 0.26 0.47 16 3 O -0.15 -1.86 10.19 -11.47 -0.12 -1.97 16 4 N -0.50 -6.56 3.02 -65.23 -0.20 -6.76 16 5 C 0.14 1.40 6.38 -4.04 -0.03 1.38 16 6 C -0.17 -1.67 10.04 37.16 0.37 -1.30 16 7 C 0.71 11.46 8.18 -86.92 -0.71 10.75 16 8 O -0.52 -9.47 13.67 5.29 0.07 -9.40 16 9 N -0.65 -10.82 5.37 -15.67 -0.08 -10.90 16 10 C 0.34 6.01 7.45 -154.43 -1.15 4.86 16 11 N -0.44 -7.63 7.87 -12.22 -0.10 -7.73 16 12 C 0.08 1.06 11.17 -17.55 -0.20 0.86 16 13 C -0.16 -2.04 10.10 -39.44 -0.40 -2.44 16 14 C -0.15 -2.16 9.14 -39.17 -0.36 -2.52 16 15 C 0.07 1.14 6.72 -38.92 -0.26 0.88 16 16 O -0.32 -6.00 9.39 -19.69 -0.18 -6.18 16 17 C 0.07 1.31 4.70 37.16 0.17 1.49 16 18 C 0.03 0.68 5.34 -27.88 -0.15 0.53 16 19 C -0.53 -14.13 9.11 -34.44 -0.31 -14.44 16 20 H 0.06 1.47 7.74 -52.48 -0.41 1.07 16 21 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 22 N -0.89 -25.45 13.29 55.43 0.74 -24.72 16 23 Si 0.90 20.65 29.54 -169.99 -5.02 15.63 16 24 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 25 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 26 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 27 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 28 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 30 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.09 0.67 8.14 -51.92 -0.42 0.25 16 33 H 0.08 0.83 7.90 -51.93 -0.41 0.42 16 34 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.07 0.85 7.34 -51.93 -0.38 0.47 16 36 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 37 H 0.42 6.77 7.11 -40.82 -0.29 6.48 16 38 H 0.16 1.67 8.06 -52.49 -0.42 1.25 16 39 H 0.13 1.24 8.06 -52.49 -0.42 0.82 16 40 H 0.15 1.97 6.44 -52.49 -0.34 1.64 16 41 H 0.05 0.98 7.70 -51.93 -0.40 0.58 16 42 H 0.05 1.00 7.70 -51.93 -0.40 0.60 16 43 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 44 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 45 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 LS Contribution 382.52 15.07 5.76 5.76 Total: -1.00 -32.00 382.52 -8.43 -40.43 By element: Atomic # 1 Polarization: 11.61 SS G_CDS: -6.83 Total: 4.77 kcal Atomic # 6 Polarization: 3.52 SS G_CDS: -2.47 Total: 1.05 kcal Atomic # 7 Polarization: -50.47 SS G_CDS: 0.36 Total: -50.11 kcal Atomic # 8 Polarization: -17.32 SS G_CDS: -0.23 Total: -17.55 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -5.02 Total: 15.63 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -32.00 -8.43 -40.43 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000879240158.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.381 kcal (2) G-P(sol) polarization free energy of solvation -32.005 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.623 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.429 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.434 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.052 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds