Wall clock time and date at job start Tue Mar 31 2020 14:42:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42902 * 109.47538 * 2 1 4 4 N 1.41600 * 114.00173 * 179.97438 * 3 2 1 5 5 C 1.46496 * 120.00143 * 269.99788 * 4 3 2 6 6 C 1.53000 * 109.47210 * 255.00185 * 5 4 3 7 7 C 1.34776 * 119.99868 * 89.99996 * 4 3 2 8 8 O 1.21589 * 120.00100 * 180.02562 * 7 4 3 9 9 N 1.34775 * 120.00018 * 359.97438 * 7 4 3 10 10 C 1.39594 * 119.99902 * 179.97438 * 9 7 4 11 11 N 1.32268 * 119.72347 * 0.29564 * 10 9 7 12 12 C 1.31970 * 121.68397 * 180.28583 * 11 10 9 13 13 C 1.38074 * 120.95656 * 359.70589 * 12 11 10 14 14 C 1.38794 * 119.35179 * 359.97438 * 13 12 11 15 15 C 1.38781 * 118.44773 * 359.97438 * 14 13 12 16 16 O 1.35983 * 120.49767 * 179.97438 * 15 14 13 17 17 C 1.42906 * 116.99537 * 0.02562 * 16 15 14 18 18 C 1.53006 * 109.46748 * 179.97438 * 17 16 15 19 19 C 1.50699 * 109.46866 * 179.97438 * 18 17 16 20 20 H 1.08003 * 119.99962 * 359.97438 * 19 18 17 21 21 C 1.37874 * 120.00270 * 180.02562 * 19 18 17 22 22 N 1.31522 * 119.99834 * 359.97438 * 21 19 18 23 23 Si 1.86793 * 120.00496 * 180.02562 * 21 19 18 24 24 H 1.48494 * 109.47325 * 59.99531 * 23 21 19 25 25 H 1.48496 * 109.47425 * 179.97438 * 23 21 19 26 26 H 1.48505 * 109.47183 * 299.99726 * 23 21 19 27 27 H 1.08997 * 109.47408 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47173 * 300.00958 * 1 2 3 29 29 H 1.09006 * 109.46345 * 60.00061 * 1 2 3 30 30 H 1.09002 * 109.47495 * 239.99871 * 2 1 3 31 31 H 1.08999 * 109.46954 * 120.00204 * 2 1 3 32 32 H 1.09007 * 109.46853 * 14.99825 * 5 4 3 33 33 H 1.09000 * 109.47308 * 134.99942 * 5 4 3 34 34 H 1.08998 * 109.46894 * 179.97438 * 6 5 4 35 35 H 1.09000 * 109.46848 * 299.99989 * 6 5 4 36 36 H 1.09000 * 109.47184 * 59.99681 * 6 5 4 37 37 H 0.97000 * 120.00172 * 0.02562 * 9 7 4 38 38 H 1.08000 * 119.52522 * 179.72561 * 12 11 10 39 39 H 1.07997 * 120.32400 * 179.97438 * 13 12 11 40 40 H 1.07993 * 120.77632 * 180.02562 * 14 13 12 41 41 H 1.09000 * 109.47490 * 59.99651 * 17 16 15 42 42 H 1.09001 * 109.47232 * 299.99005 * 17 16 15 43 43 H 1.08993 * 109.46955 * 299.99993 * 18 17 16 44 44 H 1.09000 * 109.47050 * 59.99822 * 18 17 16 45 45 H 0.96992 * 120.00032 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 7 3.4180 1.4590 0.0006 5 6 4.1477 1.5171 1.2695 6 6 4.6141 2.9517 1.5245 7 6 4.0903 1.5120 -1.1664 8 8 5.3024 1.6075 -1.1659 9 7 3.4190 1.4581 -2.3338 10 6 4.1153 1.5136 -3.5424 11 7 5.4342 1.6131 -3.5355 12 6 6.1306 1.6739 -4.6549 13 6 5.5040 1.6296 -5.8845 14 6 4.1216 1.5190 -5.9400 15 6 3.4150 1.4559 -4.7472 16 8 2.0595 1.3476 -4.7530 17 6 1.4177 1.3029 -6.0291 18 6 -0.0950 1.1804 -5.8351 19 6 -0.7718 1.1339 -7.1807 20 1 -0.1820 1.1868 -8.0839 21 6 -2.1440 1.0248 -7.2589 22 7 -2.8623 0.9608 -6.1590 23 14 -2.9830 0.9663 -8.9268 24 1 -2.4858 -0.2063 -9.6902 25 1 -4.4511 0.8476 -8.7386 26 1 -2.6788 2.2109 -9.6778 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5140 0.8899 29 1 -0.3632 0.5139 -0.8901 30 1 1.8934 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 3.4924 1.1986 2.0804 33 1 5.0135 0.8566 1.2214 34 1 5.1566 2.9950 2.4689 35 1 5.2693 3.2702 0.7137 36 1 3.7483 3.6122 1.5727 37 1 2.4520 1.3816 -2.3342 38 1 7.2062 1.7593 -4.6085 39 1 6.0839 1.6806 -6.7941 40 1 3.6079 1.4820 -6.8892 41 1 1.7827 0.4421 -6.5894 42 1 1.6408 2.2165 -6.5802 43 1 -0.3178 0.2668 -5.2841 44 1 -0.4603 2.0409 -5.2746 45 1 -3.8276 0.8837 -6.2139 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000879240158.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:42:32 Heat of formation + Delta-G solvation = -36.814307 kcal Electronic energy + Delta-G solvation = -27695.374918 eV Core-core repulsion = 23715.550936 eV Total energy + Delta-G solvation = -3979.823982 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.15805 -40.91804 -39.23308 -38.57931 -36.32659 -35.47243 -35.08473 -32.92081 -32.50552 -32.08323 -30.80627 -29.62865 -27.16621 -25.51267 -24.43531 -24.07654 -23.56642 -22.60275 -21.52604 -20.24879 -19.54827 -18.95473 -18.06440 -17.46997 -17.45710 -17.24934 -16.89850 -16.51971 -16.10783 -16.07182 -15.70704 -15.59510 -15.17466 -15.01665 -14.76512 -14.34773 -14.15755 -13.80823 -13.64424 -13.53458 -13.30404 -13.20057 -12.98971 -12.81144 -12.72284 -12.56993 -12.45025 -12.13417 -11.88679 -11.77767 -11.71842 -11.62455 -11.43254 -11.22701 -10.59798 -10.45845 -10.28162 -10.13996 -8.85870 -8.24885 -6.37715 0.10960 0.29078 0.61787 1.42701 1.45459 1.53218 1.74128 1.94347 2.11368 2.44700 2.88231 3.10088 3.31758 3.62630 3.85701 3.96129 3.97961 4.07312 4.10372 4.12751 4.25366 4.28964 4.31844 4.32959 4.45679 4.47656 4.69712 4.74261 4.82613 4.90040 4.96106 4.96945 5.11618 5.20331 5.22244 5.30261 5.31462 5.39657 5.49755 5.50023 5.67899 5.76932 6.08039 6.33200 6.53959 6.76629 7.03393 7.30674 7.32221 8.87492 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.011584 B = 0.003469 C = 0.002739 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2416.484711 B = 8069.744748 C =10219.634412 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.019 3.981 3 O -0.156 6.156 4 N -0.491 5.491 5 C 0.131 3.869 6 C -0.163 4.163 7 C 0.703 3.297 8 O -0.544 6.544 9 N -0.660 5.660 10 C 0.323 3.677 11 N -0.472 5.472 12 C 0.077 3.923 13 C -0.144 4.144 14 C -0.145 4.145 15 C 0.039 3.961 16 O -0.332 6.332 17 C 0.083 3.917 18 C 0.031 3.969 19 C -0.546 4.546 20 H 0.071 0.929 21 C 0.005 3.995 22 N -0.928 5.928 23 Si 0.971 3.029 24 H -0.264 1.264 25 H -0.285 1.285 26 H -0.265 1.265 27 H 0.096 0.904 28 H 0.078 0.922 29 H 0.050 0.950 30 H 0.044 0.956 31 H 0.082 0.918 32 H 0.116 0.884 33 H 0.084 0.916 34 H 0.097 0.903 35 H 0.039 0.961 36 H 0.055 0.945 37 H 0.422 0.578 38 H 0.189 0.811 39 H 0.178 0.822 40 H 0.159 0.841 41 H 0.066 0.934 42 H 0.064 0.936 43 H 0.001 0.999 44 H -0.001 1.001 45 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.380 -0.904 10.808 18.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.059 4.059 3 O -0.161 6.161 4 N -0.274 5.274 5 C 0.012 3.988 6 C -0.221 4.221 7 C 0.405 3.595 8 O -0.418 6.418 9 N -0.309 5.309 10 C 0.091 3.909 11 N -0.187 5.187 12 C -0.080 4.080 13 C -0.165 4.165 14 C -0.172 4.172 15 C -0.012 4.012 16 O -0.246 6.246 17 C 0.009 3.991 18 C -0.006 4.006 19 C -0.583 4.583 20 H 0.089 0.911 21 C -0.194 4.194 22 N -0.567 5.567 23 Si 0.794 3.206 24 H -0.189 1.189 25 H -0.210 1.210 26 H -0.190 1.190 27 H 0.114 0.886 28 H 0.097 0.903 29 H 0.070 0.930 30 H 0.063 0.937 31 H 0.100 0.900 32 H 0.134 0.866 33 H 0.102 0.898 34 H 0.116 0.884 35 H 0.059 0.941 36 H 0.075 0.925 37 H 0.260 0.740 38 H 0.206 0.794 39 H 0.196 0.804 40 H 0.176 0.824 41 H 0.084 0.916 42 H 0.082 0.918 43 H 0.019 0.981 44 H 0.017 0.983 45 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 15.239 -0.668 11.952 19.378 hybrid contribution -1.904 -0.319 -1.574 2.491 sum 13.335 -0.987 10.377 16.926 Atomic orbital electron populations 1.21750 0.90982 1.04240 1.03355 1.23276 0.96846 0.83960 1.01797 1.90676 1.01541 1.27107 1.96812 1.49586 0.95081 1.77275 1.05485 1.21832 0.95936 0.98964 0.82047 1.22102 1.01522 0.95753 1.02708 1.16035 0.84870 0.78533 0.80050 1.91024 1.10726 1.55642 1.84384 1.42583 1.11167 1.74466 1.02694 1.17702 0.88633 1.01589 0.82976 1.67650 1.03781 1.14517 1.32730 1.23100 1.01363 0.97151 0.86404 1.22302 0.93432 1.00044 1.00700 1.21902 0.96082 1.02110 0.97070 1.19702 0.84340 1.03114 0.93999 1.86046 1.15668 1.88142 1.34717 1.22973 0.93594 1.00896 0.81647 1.18928 0.88574 0.96090 0.97000 1.21364 0.92539 1.51729 0.92711 0.91060 1.25959 0.98254 0.94297 1.00906 1.70097 1.06652 1.50264 1.29701 0.85415 0.76970 0.79340 0.78827 1.18907 1.21019 1.18989 0.88585 0.90328 0.93042 0.93714 0.89992 0.86570 0.89795 0.88391 0.94142 0.92544 0.73963 0.79381 0.80418 0.82369 0.91630 0.91783 0.98062 0.98281 0.92534 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.86 10.28 71.98 0.74 -2.12 16 2 C 0.02 0.40 7.04 71.98 0.51 0.91 16 3 O -0.16 -4.06 10.19 -38.78 -0.40 -4.46 16 4 N -0.49 -13.22 3.02 -478.54 -1.44 -14.66 16 5 C 0.13 2.57 6.38 86.38 0.55 3.13 16 6 C -0.16 -3.12 10.04 71.98 0.72 -2.40 16 7 C 0.70 23.57 8.18 179.06 1.46 25.04 16 8 O -0.54 -20.49 13.67 -4.00 -0.05 -20.55 16 9 N -0.66 -22.87 5.37 -321.75 -1.73 -24.60 16 10 C 0.32 11.53 7.45 132.98 0.99 12.52 16 11 N -0.47 -16.09 7.87 -192.57 -1.52 -17.61 16 12 C 0.08 1.94 11.17 84.63 0.95 2.89 16 13 C -0.14 -3.16 10.10 22.36 0.23 -2.93 16 14 C -0.15 -4.02 9.14 22.53 0.21 -3.81 16 15 C 0.04 1.36 6.72 22.70 0.15 1.51 16 16 O -0.33 -13.02 9.39 -93.36 -0.88 -13.90 16 17 C 0.08 3.34 4.70 71.98 0.34 3.67 16 18 C 0.03 1.61 5.34 29.85 0.16 1.77 16 19 C -0.55 -29.33 9.11 25.60 0.23 -29.10 16 20 H 0.07 3.55 7.74 -2.91 -0.02 3.53 16 21 C 0.00 0.26 5.46 84.65 0.46 0.72 16 22 N -0.93 -54.45 13.29 21.45 0.28 -54.16 16 23 Si 0.97 42.06 29.54 68.60 2.03 44.08 16 24 H -0.26 -10.92 7.11 99.48 0.71 -10.21 16 25 H -0.28 -12.20 7.11 99.48 0.71 -11.49 16 26 H -0.27 -10.99 7.11 99.48 0.71 -10.28 16 27 H 0.10 1.58 8.14 -2.39 -0.02 1.56 16 28 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 29 H 0.05 1.26 8.14 -2.38 -0.02 1.24 16 30 H 0.04 1.08 8.14 -2.39 -0.02 1.06 16 31 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 32 H 0.12 1.57 8.14 -2.38 -0.02 1.55 16 33 H 0.08 1.65 7.90 -2.39 -0.02 1.63 16 34 H 0.10 1.28 8.14 -2.39 -0.02 1.26 16 35 H 0.04 1.01 7.34 -2.39 -0.02 1.00 16 36 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 37 H 0.42 14.48 7.11 -92.71 -0.66 13.82 16 38 H 0.19 3.39 8.06 -2.91 -0.02 3.37 16 39 H 0.18 2.35 8.06 -2.91 -0.02 2.33 16 40 H 0.16 3.90 6.44 -2.91 -0.02 3.88 16 41 H 0.07 2.43 7.70 -2.39 -0.02 2.41 16 42 H 0.06 2.40 7.70 -2.39 -0.02 2.38 16 43 H 0.00 0.05 8.14 -2.39 -0.02 0.03 16 44 H 0.00 -0.07 8.14 -2.39 -0.02 -0.09 16 45 H 0.27 14.67 8.31 -92.71 -0.77 13.90 16 Total: -1.00 -71.75 382.52 4.33 -67.42 By element: Atomic # 1 Polarization: 26.31 SS G_CDS: 0.34 Total: 26.64 kcal Atomic # 6 Polarization: 4.10 SS G_CDS: 7.70 Total: 11.80 kcal Atomic # 7 Polarization: -106.64 SS G_CDS: -4.40 Total: -111.04 kcal Atomic # 8 Polarization: -37.58 SS G_CDS: -1.33 Total: -38.90 kcal Atomic # 14 Polarization: 42.06 SS G_CDS: 2.03 Total: 44.08 kcal Total: -71.75 4.33 -67.42 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000879240158.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.608 kcal (2) G-P(sol) polarization free energy of solvation -71.754 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.146 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.332 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.423 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.814 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds