Wall clock time and date at job start Tue Mar 31 2020 13:35:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52992 * 109.47369 * 2 1 4 4 H 1.09005 * 109.47314 * 304.99995 * 3 2 1 5 5 N 1.46497 * 109.47572 * 64.99896 * 3 2 1 6 6 C 1.34778 * 120.00058 * 275.00854 * 5 3 2 7 7 O 1.21573 * 119.99733 * 359.97438 * 6 5 3 8 8 N 1.34772 * 120.00207 * 179.97438 * 6 5 3 9 9 C 1.39243 * 120.00507 * 183.97732 * 8 6 5 10 10 C 1.39685 * 119.57068 * 338.46579 * 9 8 6 11 11 C 1.38648 * 119.49441 * 179.97438 * 10 9 8 12 12 C 1.38355 * 118.66826 * 359.74664 * 11 10 9 13 13 C 1.40574 * 119.13243 * 0.47075 * 12 11 10 14 14 C 1.41335 * 119.78567 * 179.79576 * 13 12 11 15 15 H 1.08001 * 120.00046 * 5.16104 * 14 13 12 16 16 C 1.40032 * 119.99767 * 185.16565 * 14 13 12 17 17 N 1.30744 * 119.99987 * 184.43681 * 16 14 13 18 18 Si 1.86800 * 119.99898 * 4.43727 * 16 14 13 19 19 H 1.48502 * 109.46818 * 180.02562 * 18 16 14 20 20 H 1.48500 * 109.46885 * 299.99730 * 18 16 14 21 21 H 1.48494 * 109.47191 * 60.00196 * 18 16 14 22 22 N 1.31903 * 119.57876 * 158.43894 * 9 8 6 23 23 C 1.53007 * 109.47231 * 185.00230 * 3 2 1 24 24 O 1.42897 * 109.46820 * 299.99517 * 23 3 2 25 25 C 1.42897 * 114.00002 * 204.57363 * 24 23 3 26 26 O 1.42901 * 109.47118 * 59.99726 * 23 3 2 27 27 C 1.42901 * 113.99904 * 167.02182 * 26 23 3 28 28 H 1.08999 * 109.46932 * 299.99830 * 1 2 3 29 29 H 1.08999 * 109.47438 * 59.99900 * 1 2 3 30 30 H 1.09002 * 109.47589 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.46893 * 239.99622 * 2 1 3 32 32 H 1.09006 * 109.47297 * 120.00461 * 2 1 3 33 33 H 0.97002 * 120.00190 * 94.99645 * 5 3 2 34 34 H 0.97012 * 119.99879 * 3.97593 * 8 6 5 35 35 H 1.07995 * 120.25233 * 359.97072 * 10 9 8 36 36 H 1.07995 * 120.66880 * 180.02562 * 11 10 9 37 37 H 1.08006 * 120.43459 * 180.27122 * 12 11 10 38 38 H 0.97002 * 119.99532 * 354.97170 * 17 16 14 39 39 H 1.08998 * 109.46965 * 179.97438 * 23 3 2 40 40 H 1.09001 * 109.47174 * 65.88106 * 25 24 23 41 41 H 1.08998 * 109.47431 * 185.87782 * 25 24 23 42 42 H 1.08996 * 109.47542 * 305.87907 * 25 24 23 43 43 H 1.09003 * 109.47099 * 312.89254 * 27 26 23 44 44 H 1.09004 * 109.46730 * 72.89162 * 27 26 23 45 45 H 1.09001 * 109.46802 * 192.89125 * 27 26 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 -0.8418 5 7 1.6525 2.0975 1.2517 6 6 0.4351 2.6644 1.3669 7 8 -0.3411 2.6324 0.4319 8 7 0.0784 3.2666 2.5186 9 6 -1.2077 3.7792 2.6671 10 6 -1.9642 4.0821 1.5326 11 6 -3.2448 4.5920 1.6822 12 6 -3.7387 4.7812 2.9607 13 6 -2.9263 4.4614 4.0625 14 6 -3.4154 4.6533 5.3745 15 1 -4.4377 4.9650 5.5296 16 6 -2.5742 4.4395 6.4735 17 7 -3.0491 4.5323 7.6881 18 14 -0.7736 4.0216 6.2040 19 1 -0.1047 3.8442 7.5180 20 1 -0.6691 2.7634 5.4221 21 1 -0.1158 5.1242 5.4580 22 7 -1.6960 3.9721 3.8771 23 6 3.5649 1.4442 -0.1258 24 8 4.1346 0.7376 0.9779 25 6 5.4768 1.1213 1.2832 26 8 3.9429 0.8053 -1.3468 27 6 5.3106 1.0061 -1.7087 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3634 -1.0276 -0.0005 31 1 1.8932 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 2.2719 2.1231 1.9977 34 1 0.7177 3.3429 3.2443 35 1 -1.5548 3.9204 0.5464 36 1 -3.8465 4.8323 0.8182 37 1 -4.7342 5.1726 3.1103 38 1 -3.9644 4.8203 7.8302 39 1 3.9282 2.4719 -0.1262 40 1 5.4891 2.1537 1.6325 41 1 5.8729 0.4696 2.0619 42 1 6.0925 1.0333 0.3880 43 1 5.5616 2.0621 -1.6087 44 1 5.9505 0.4168 -1.0519 45 1 5.4629 0.6926 -2.7415 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000881144270.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:35:20 Heat of formation + Delta-G solvation = -83.182390 kcal Electronic energy + Delta-G solvation = -28147.208012 eV Core-core repulsion = 24165.373359 eV Total energy + Delta-G solvation = -3981.834653 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.65289 -39.65859 -38.34065 -36.40265 -35.82629 -34.43192 -33.53547 -32.10264 -31.05957 -29.80927 -29.08183 -26.73311 -26.42942 -25.26836 -23.50433 -22.66847 -21.73864 -20.70920 -20.37180 -18.75994 -18.02455 -17.68985 -17.42338 -17.10713 -16.08647 -15.74629 -15.27295 -15.03183 -14.84440 -14.66009 -14.31930 -14.06232 -13.97159 -13.56197 -13.52041 -13.12655 -12.84789 -12.73291 -12.69066 -12.40838 -12.21474 -11.85589 -11.81226 -11.43492 -11.11388 -10.99268 -10.82002 -10.62891 -10.39380 -10.31097 -10.22926 -9.94590 -9.64895 -9.36631 -9.13568 -8.97234 -8.50992 -7.71781 -7.41627 -7.18391 -4.74297 2.38529 2.53301 2.68983 3.11780 3.43046 3.51998 3.56826 3.67342 3.97386 4.27436 4.33040 4.40999 4.44856 4.67220 4.68397 4.80449 4.88916 4.96146 5.12243 5.17754 5.22831 5.36374 5.53859 5.58515 5.71907 5.88656 6.00654 6.11594 6.13613 6.27735 6.39961 6.46330 6.56667 6.57134 6.60511 6.68531 6.75389 6.92626 7.19828 7.36196 7.47325 7.66626 7.79645 7.93924 8.22166 8.36336 8.66852 8.77414 9.44384 10.02479 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.018101 B = 0.003383 C = 0.003018 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1546.526373 B = 8275.879207 C = 9274.288046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.125 4.125 3 C 0.186 3.814 4 H 0.110 0.890 5 N -0.737 5.737 6 C 0.713 3.287 7 O -0.556 6.556 8 N -0.666 5.666 9 C 0.402 3.598 10 C -0.310 4.310 11 C -0.035 4.035 12 C -0.280 4.280 13 C 0.274 3.726 14 C -0.478 4.478 15 H 0.083 0.917 16 C 0.043 3.957 17 N -0.808 5.808 18 Si 1.155 2.845 19 H -0.334 1.334 20 H -0.280 1.280 21 H -0.296 1.296 22 N -0.600 5.600 23 C 0.238 3.762 24 O -0.386 6.386 25 C 0.012 3.988 26 O -0.383 6.383 27 C 0.022 3.978 28 H 0.060 0.940 29 H 0.059 0.941 30 H 0.043 0.957 31 H 0.076 0.924 32 H 0.068 0.932 33 H 0.399 0.601 34 H 0.402 0.598 35 H 0.148 0.852 36 H 0.105 0.895 37 H 0.104 0.896 38 H 0.283 0.717 39 H 0.063 0.937 40 H 0.046 0.954 41 H 0.090 0.910 42 H 0.051 0.949 43 H 0.044 0.956 44 H 0.051 0.949 45 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.107 -5.947 -13.984 23.639 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.164 4.164 3 C 0.080 3.920 4 H 0.127 0.873 5 N -0.395 5.395 6 C 0.413 3.587 7 O -0.432 6.432 8 N -0.313 5.313 9 C 0.171 3.829 10 C -0.335 4.335 11 C -0.060 4.060 12 C -0.302 4.302 13 C 0.150 3.850 14 C -0.510 4.510 15 H 0.101 0.899 16 C -0.178 4.178 17 N -0.430 5.430 18 Si 0.991 3.009 19 H -0.268 1.268 20 H -0.207 1.207 21 H -0.224 1.224 22 N -0.326 5.326 23 C 0.141 3.859 24 O -0.306 6.306 25 C -0.084 4.084 26 O -0.302 6.302 27 C -0.074 4.074 28 H 0.079 0.921 29 H 0.078 0.922 30 H 0.062 0.938 31 H 0.094 0.906 32 H 0.087 0.913 33 H 0.233 0.767 34 H 0.237 0.763 35 H 0.165 0.835 36 H 0.123 0.877 37 H 0.122 0.878 38 H 0.094 0.906 39 H 0.080 0.920 40 H 0.064 0.936 41 H 0.109 0.891 42 H 0.069 0.931 43 H 0.062 0.938 44 H 0.069 0.931 45 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 18.909 -6.810 -13.326 24.114 hybrid contribution -1.082 1.049 -0.592 1.619 sum 17.827 -5.761 -13.918 23.339 Atomic orbital electron populations 1.21812 0.94547 1.00470 1.03394 1.21822 0.96856 0.94794 1.02888 1.20604 0.88553 0.95362 0.87502 0.87259 1.44959 1.16383 1.61259 1.16915 1.15572 0.81935 0.78080 0.83064 1.90833 1.50388 1.63431 1.38513 1.42297 1.13365 1.59229 1.16407 1.17804 0.83048 0.91639 0.90392 1.21736 0.97307 1.15449 0.99011 1.20955 0.94577 0.94335 0.96096 1.21594 1.01478 1.14258 0.92879 1.18251 0.85654 0.87118 0.93940 1.20708 0.99917 1.40063 0.90311 0.89909 1.27769 1.09071 0.89922 0.91040 1.70647 1.19109 1.30082 1.23174 0.81838 0.70137 0.78726 0.70218 1.26765 1.20739 1.22390 1.65931 1.17081 1.28087 1.21486 1.23567 0.93651 0.91604 0.77035 1.88077 1.28161 1.64864 1.49526 1.23177 0.83440 1.00598 1.01184 1.88025 1.27282 1.75509 1.39396 1.23048 0.82749 1.00066 1.01532 0.92142 0.92171 0.93800 0.90584 0.91320 0.76658 0.76341 0.83472 0.87675 0.87784 0.90626 0.91975 0.93563 0.89112 0.93097 0.93771 0.93063 0.89223 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.07 8.51 37.15 0.32 -1.76 16 2 C -0.12 -1.53 5.32 -26.74 -0.14 -1.67 16 3 C 0.19 2.15 2.39 -67.93 -0.16 1.99 16 4 H 0.11 1.38 7.58 -51.93 -0.39 0.98 16 5 N -0.74 -9.23 5.00 -58.68 -0.29 -9.52 16 6 C 0.71 11.93 7.03 -86.92 -0.61 11.32 16 7 O -0.56 -10.61 10.16 5.30 0.05 -10.56 16 8 N -0.67 -12.40 5.42 -15.79 -0.09 -12.49 16 9 C 0.40 9.26 7.50 -155.00 -1.16 8.09 16 10 C -0.31 -7.00 8.89 -38.89 -0.35 -7.34 16 11 C -0.04 -0.78 10.15 -39.39 -0.40 -1.18 16 12 C -0.28 -6.75 9.83 -38.66 -0.38 -7.13 16 13 C 0.27 7.29 6.40 -85.00 -0.54 6.74 16 14 C -0.48 -13.16 9.57 -37.73 -0.36 -13.52 16 15 H 0.08 2.27 8.05 -52.49 -0.42 1.85 16 16 C 0.04 1.17 5.52 -17.34 -0.10 1.08 16 17 N -0.81 -22.19 13.65 55.55 0.76 -21.43 16 18 Si 1.15 27.95 25.60 -169.99 -4.35 23.60 16 19 H -0.33 -8.00 7.11 56.52 0.40 -7.60 16 20 H -0.28 -6.69 6.61 56.52 0.37 -6.32 16 21 H -0.30 -7.02 7.11 56.52 0.40 -6.62 16 22 N -0.60 -15.29 4.54 -10.26 -0.05 -15.33 16 23 C 0.24 2.25 2.64 37.16 0.10 2.34 16 24 O -0.39 -3.64 9.49 -59.04 -0.56 -4.20 16 25 C 0.01 0.07 10.65 101.05 1.08 1.15 16 26 O -0.38 -3.69 9.85 -59.04 -0.58 -4.27 16 27 C 0.02 0.14 9.85 101.05 1.00 1.13 16 28 H 0.06 1.03 5.64 -51.93 -0.29 0.74 16 29 H 0.06 0.90 7.84 -51.93 -0.41 0.49 16 30 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.08 0.89 7.54 -51.93 -0.39 0.49 16 32 H 0.07 0.87 7.84 -51.93 -0.41 0.46 16 33 H 0.40 4.18 8.22 -40.82 -0.34 3.85 16 34 H 0.40 6.58 8.84 -40.81 -0.36 6.22 16 35 H 0.15 3.24 5.20 -52.80 -0.27 2.97 16 36 H 0.11 1.98 8.06 -52.49 -0.42 1.56 16 37 H 0.10 2.35 8.06 -52.48 -0.42 1.92 16 38 H 0.28 7.43 8.72 -40.82 -0.36 7.08 16 39 H 0.06 0.50 7.64 -51.93 -0.40 0.11 16 40 H 0.05 0.25 8.14 -51.93 -0.42 -0.18 16 41 H 0.09 0.49 8.14 -51.93 -0.42 0.06 16 42 H 0.05 0.26 4.59 -51.93 -0.24 0.02 16 43 H 0.04 0.22 7.88 -51.93 -0.41 -0.19 16 44 H 0.05 0.28 5.91 -51.93 -0.31 -0.03 16 45 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 LS Contribution 358.95 15.07 5.41 5.41 Total: -1.00 -31.74 358.95 -7.77 -39.51 By element: Atomic # 1 Polarization: 14.40 SS G_CDS: -6.35 Total: 8.05 kcal Atomic # 6 Polarization: 2.96 SS G_CDS: -1.72 Total: 1.24 kcal Atomic # 7 Polarization: -59.11 SS G_CDS: 0.33 Total: -58.78 kcal Atomic # 8 Polarization: -17.95 SS G_CDS: -1.09 Total: -19.03 kcal Atomic # 14 Polarization: 27.95 SS G_CDS: -4.35 Total: 23.60 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -31.74 -7.77 -39.51 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881144270.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.668 kcal (2) G-P(sol) polarization free energy of solvation -31.745 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.413 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.769 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.514 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.182 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds