Wall clock time and date at job start Tue Mar 31 2020 14:39:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46507 * 109.47006 * 2 1 4 4 C 1.46493 * 119.99984 * 269.99978 * 3 2 1 5 5 C 1.52999 * 109.47463 * 269.99957 * 4 3 2 6 6 O 1.42907 * 109.46922 * 64.99609 * 5 4 3 7 7 C 1.42898 * 113.99428 * 180.02562 * 6 5 4 8 8 C 1.53001 * 109.46719 * 180.02562 * 7 6 5 9 9 O 1.42895 * 109.47175 * 65.00071 * 8 7 6 10 10 C 1.34775 * 119.99619 * 89.99652 * 3 2 1 11 11 O 1.21583 * 119.99770 * 180.02562 * 10 3 2 12 12 N 1.34772 * 120.00330 * 0.02562 * 10 3 2 13 13 C 1.39248 * 119.99952 * 185.79566 * 12 10 3 14 14 C 1.39684 * 119.57459 * 18.79989 * 13 12 10 15 15 C 1.38652 * 119.49306 * 180.02562 * 14 13 12 16 16 C 1.38350 * 118.67065 * 359.74119 * 15 14 13 17 17 C 1.40574 * 119.13368 * 0.50356 * 16 15 14 18 18 C 1.41332 * 119.79029 * 179.76896 * 17 16 15 19 19 H 1.07998 * 119.99665 * 6.97187 * 18 17 16 20 20 C 1.40024 * 119.99906 * 186.97420 * 18 17 16 21 21 N 1.30742 * 119.99749 * 181.93180 * 20 18 17 22 22 Si 1.86792 * 120.00153 * 1.93354 * 20 18 17 23 23 H 1.48505 * 109.47287 * 179.97438 * 22 20 18 24 24 H 1.48493 * 109.47370 * 300.00230 * 22 20 18 25 25 H 1.48506 * 109.47193 * 60.00287 * 22 20 18 26 26 N 1.31908 * 119.57492 * 198.82584 * 13 12 10 27 27 H 1.08999 * 109.47219 * 299.99593 * 1 2 3 28 28 H 1.08996 * 109.47257 * 60.00323 * 1 2 3 29 29 H 1.09000 * 109.46640 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47219 * 240.00407 * 2 1 3 31 31 H 1.08996 * 109.47257 * 119.99677 * 2 1 3 32 32 H 1.09002 * 109.47500 * 29.99935 * 4 3 2 33 33 H 1.09002 * 109.47305 * 150.00001 * 4 3 2 34 34 H 1.08991 * 109.47446 * 184.99941 * 5 4 3 35 35 H 1.09008 * 109.47054 * 305.00066 * 5 4 3 36 36 H 1.08992 * 109.47820 * 300.00381 * 7 6 5 37 37 H 1.09002 * 109.47120 * 60.01088 * 7 6 5 38 38 H 1.08998 * 109.47369 * 185.00700 * 8 7 6 39 39 H 1.09008 * 109.47202 * 305.00238 * 8 7 6 40 40 H 0.96701 * 114.00332 * 179.97438 * 9 8 7 41 41 H 0.96994 * 120.00240 * 5.80097 * 12 10 3 42 42 H 1.07999 * 120.25659 * 0.02562 * 14 13 12 43 43 H 1.08002 * 120.66481 * 180.02562 * 15 14 13 44 44 H 1.08000 * 120.43514 * 180.25153 * 16 15 14 45 45 H 0.97006 * 120.00386 * 354.83210 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2625 2.0719 -1.2687 5 6 3.7075 1.8315 -1.7104 6 8 3.8944 0.4433 -1.9935 7 6 5.2179 0.1096 -2.4164 8 6 5.3018 -1.3933 -2.6906 9 8 4.4574 -1.7239 -3.7950 10 6 2.2429 2.0166 1.1672 11 8 2.6477 3.1630 1.1673 12 7 2.0187 1.3811 2.3344 13 6 2.1341 2.0731 3.5372 14 6 2.0884 3.4692 3.5366 15 6 2.2040 4.1565 4.7352 16 6 2.3567 3.4318 5.9038 17 6 2.4004 2.0283 5.8381 18 6 2.5609 1.2745 7.0227 19 1 2.5366 1.7670 7.9836 20 6 2.7515 -0.1108 6.9507 21 7 2.8621 -0.8134 8.0477 22 14 2.8477 -0.9551 5.2872 23 1 3.0522 -2.4129 5.4830 24 1 1.5831 -0.7278 4.5428 25 1 3.9850 -0.3958 4.5132 26 7 2.2856 1.4017 4.6626 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3632 -1.0277 -0.0005 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 1.5817 1.6878 -2.0284 33 1 2.0955 3.1411 -1.1384 34 1 3.9156 2.4163 -2.6063 35 1 4.3863 2.1344 -0.9131 36 1 5.4578 0.6586 -3.3268 37 1 5.9277 0.3765 -1.6334 38 1 6.3312 -1.6627 -2.9269 39 1 4.9762 -1.9427 -1.8072 40 1 4.4612 -2.6629 -4.0258 41 1 1.7770 0.4417 2.3366 42 1 1.9641 4.0091 2.6096 43 1 2.1709 5.2357 4.7567 44 1 2.4453 3.9379 6.8538 45 1 2.8875 -0.3675 8.9088 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000881147737.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:39:25 Heat of formation + Delta-G solvation = -111.326482 kcal Electronic energy + Delta-G solvation = -27974.866454 eV Core-core repulsion = 23991.811382 eV Total energy + Delta-G solvation = -3983.055072 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.00657 -40.28180 -39.17405 -37.57318 -36.87201 -36.32714 -35.35146 -33.01959 -32.54393 -31.47190 -30.63733 -29.09882 -27.25693 -24.93180 -24.37099 -23.64467 -23.39162 -22.89517 -21.00343 -20.16417 -19.50731 -18.56520 -18.37553 -17.72533 -17.44906 -16.91731 -16.66511 -16.58609 -16.05941 -15.76611 -15.60903 -15.25779 -15.09129 -15.00768 -14.70962 -14.57800 -14.24577 -14.07310 -13.84586 -13.68365 -13.16470 -13.00424 -12.87699 -12.76510 -12.70254 -12.49716 -12.26142 -12.04183 -11.86364 -11.78085 -11.62425 -11.16291 -10.96319 -10.93480 -10.57968 -10.41053 -9.85867 -9.71848 -9.27044 -9.13617 -6.81702 0.58952 0.74776 1.35342 1.54248 1.66990 1.96852 2.02340 2.42691 2.66580 2.67671 2.71364 3.40822 3.56515 3.94306 4.01534 4.04809 4.16700 4.20649 4.24073 4.32712 4.35286 4.41412 4.48770 4.52651 4.60559 4.64819 4.70147 4.74529 4.78642 4.84263 4.86588 4.92495 4.96447 5.30951 5.32364 5.36688 5.45061 5.51635 5.63357 5.80770 5.89781 6.01098 6.21144 6.40979 6.56947 6.72446 6.92423 7.33969 7.50912 7.95130 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.013725 B = 0.003696 C = 0.003271 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2039.582047 B = 7574.603176 C = 8559.046987 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.102 3.898 3 N -0.609 5.609 4 C 0.137 3.863 5 C 0.047 3.953 6 O -0.390 6.390 7 C 0.053 3.947 8 C 0.079 3.921 9 O -0.588 6.588 10 C 0.708 3.292 11 O -0.594 6.594 12 N -0.666 5.666 13 C 0.395 3.605 14 C -0.305 4.305 15 C -0.026 4.026 16 C -0.294 4.294 17 C 0.259 3.741 18 C -0.508 4.508 19 H 0.070 0.930 20 C 0.016 3.984 21 N -0.830 5.830 22 Si 1.188 2.812 23 H -0.327 1.327 24 H -0.275 1.275 25 H -0.305 1.305 26 N -0.616 5.616 27 H 0.038 0.962 28 H 0.071 0.929 29 H 0.087 0.913 30 H 0.110 0.890 31 H 0.063 0.937 32 H 0.113 0.887 33 H 0.097 0.903 34 H 0.079 0.921 35 H 0.031 0.969 36 H 0.059 0.941 37 H 0.063 0.937 38 H 0.082 0.918 39 H 0.052 0.948 40 H 0.396 0.604 41 H 0.411 0.589 42 H 0.150 0.850 43 H 0.145 0.855 44 H 0.116 0.884 45 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.529 -1.928 -24.241 24.324 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.020 4.020 3 N -0.345 5.345 4 C 0.014 3.986 5 C -0.031 4.031 6 O -0.310 6.310 7 C -0.023 4.023 8 C 0.001 3.999 9 O -0.396 6.396 10 C 0.410 3.590 11 O -0.474 6.474 12 N -0.315 5.315 13 C 0.163 3.837 14 C -0.330 4.330 15 C -0.050 4.050 16 C -0.316 4.316 17 C 0.134 3.866 18 C -0.541 4.541 19 H 0.088 0.912 20 C -0.200 4.200 21 N -0.454 5.454 22 Si 1.021 2.979 23 H -0.260 1.260 24 H -0.202 1.202 25 H -0.234 1.234 26 N -0.342 5.342 27 H 0.057 0.943 28 H 0.090 0.910 29 H 0.106 0.894 30 H 0.128 0.872 31 H 0.082 0.918 32 H 0.131 0.869 33 H 0.115 0.885 34 H 0.097 0.903 35 H 0.050 0.950 36 H 0.077 0.923 37 H 0.081 0.919 38 H 0.100 0.900 39 H 0.071 0.929 40 H 0.246 0.754 41 H 0.249 0.751 42 H 0.168 0.832 43 H 0.162 0.838 44 H 0.134 0.866 45 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 0.676 -2.943 -24.867 25.049 hybrid contribution 0.309 1.648 1.785 2.450 sum 0.985 -1.295 -23.081 23.139 Atomic orbital electron populations 1.22191 0.94574 1.03578 1.02167 1.21759 0.95177 0.80942 1.04117 1.47224 1.68375 1.15269 1.03591 1.21580 0.95218 0.98570 0.83184 1.22979 0.97617 0.82933 0.99523 1.87883 1.30418 1.24941 1.87729 1.22698 0.84663 0.96051 0.98936 1.22226 0.94673 0.93687 0.89291 1.86486 1.69119 1.32521 1.51502 1.15851 0.78373 0.84249 0.80549 1.90788 1.52919 1.17639 1.86013 1.42512 1.71275 1.14633 1.03121 1.18137 0.92281 0.89140 0.84171 1.21875 1.18333 0.92450 1.00306 1.21339 0.92369 1.00059 0.91234 1.21757 1.17060 0.93928 0.98885 1.18452 0.87642 0.91253 0.89243 1.20706 1.45289 0.95119 0.92967 0.91162 1.28457 0.88317 0.95630 1.07623 1.70658 1.34058 1.40438 1.00197 0.81391 0.78322 0.69466 0.68693 1.26013 1.20232 1.23400 1.65847 1.30501 1.39070 0.98792 0.94288 0.91045 0.89431 0.87223 0.91845 0.86894 0.88467 0.90279 0.95018 0.92278 0.91858 0.89992 0.92934 0.75389 0.75102 0.83249 0.83754 0.86600 0.90781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.94 10.24 71.98 0.74 -2.21 16 2 C 0.10 2.08 5.76 86.38 0.50 2.58 16 3 N -0.61 -15.37 2.44 -839.84 -2.05 -17.41 16 4 C 0.14 2.73 5.81 86.38 0.50 3.23 16 5 C 0.05 0.95 6.28 71.98 0.45 1.40 16 6 O -0.39 -8.16 9.13 -144.33 -1.32 -9.48 16 7 C 0.05 0.90 6.32 71.98 0.45 1.36 16 8 C 0.08 1.08 7.43 71.98 0.53 1.62 16 9 O -0.59 -8.95 13.62 -144.33 -1.97 -10.91 16 10 C 0.71 24.55 8.12 179.06 1.45 26.01 16 11 O -0.59 -23.67 12.72 -3.98 -0.05 -23.73 16 12 N -0.67 -25.66 5.29 -322.12 -1.70 -27.36 16 13 C 0.39 18.37 7.51 133.26 1.00 19.37 16 14 C -0.31 -13.64 8.83 22.72 0.20 -13.44 16 15 C -0.03 -1.10 10.15 22.40 0.23 -0.88 16 16 C -0.29 -14.11 9.83 22.87 0.22 -13.88 16 17 C 0.26 13.97 6.39 40.19 0.26 14.23 16 18 C -0.51 -28.84 9.58 23.46 0.22 -28.61 16 19 H 0.07 4.03 8.05 -2.91 -0.02 4.00 16 20 C 0.02 0.91 5.52 85.29 0.47 1.38 16 21 N -0.83 -46.70 13.65 21.84 0.30 -46.41 16 22 Si 1.19 58.21 25.53 68.60 1.75 59.96 16 23 H -0.33 -15.45 7.11 99.48 0.71 -14.75 16 24 H -0.27 -12.80 6.69 99.48 0.67 -12.13 16 25 H -0.30 -15.32 7.10 99.48 0.71 -14.61 16 26 N -0.62 -31.79 4.58 -186.36 -0.85 -32.65 16 27 H 0.04 0.85 8.14 -2.39 -0.02 0.84 16 28 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 29 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 30 H 0.11 1.96 7.11 -2.39 -0.02 1.95 16 31 H 0.06 1.40 6.28 -2.39 -0.02 1.38 16 32 H 0.11 1.67 8.07 -2.39 -0.02 1.65 16 33 H 0.10 2.05 7.42 -2.39 -0.02 2.03 16 34 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 35 H 0.03 0.79 8.14 -2.38 -0.02 0.77 16 36 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 37 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 38 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 39 H 0.05 0.75 8.14 -2.38 -0.02 0.73 16 40 H 0.40 2.34 9.12 -74.06 -0.68 1.66 16 41 H 0.41 14.35 6.52 -92.71 -0.60 13.74 16 42 H 0.15 6.52 5.33 -3.16 -0.02 6.50 16 43 H 0.14 4.99 8.06 -2.91 -0.02 4.97 16 44 H 0.12 5.19 8.06 -2.91 -0.02 5.16 16 45 H 0.28 15.30 8.72 -92.70 -0.81 14.49 16 Total: -1.00 -72.29 371.66 1.01 -71.28 By element: Atomic # 1 Polarization: 24.88 SS G_CDS: -0.34 Total: 24.54 kcal Atomic # 6 Polarization: 4.92 SS G_CDS: 7.24 Total: 12.16 kcal Atomic # 7 Polarization: -119.53 SS G_CDS: -4.31 Total: -123.83 kcal Atomic # 8 Polarization: -40.78 SS G_CDS: -3.33 Total: -44.11 kcal Atomic # 14 Polarization: 58.21 SS G_CDS: 1.75 Total: 59.96 kcal Total: -72.29 1.01 -71.28 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881147737.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.044 kcal (2) G-P(sol) polarization free energy of solvation -72.291 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.335 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.009 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.283 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.326 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds