Wall clock time and date at job start Tue Mar 31 2020 14:27:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42898 * 113.99840 * 2 1 4 4 C 1.53006 * 109.47207 * 179.97438 * 3 2 1 5 5 O 1.42895 * 109.46856 * 65.00020 * 4 3 2 6 6 C 1.42897 * 113.99779 * 180.02562 * 5 4 3 7 7 C 1.53003 * 109.47236 * 179.97438 * 6 5 4 8 8 H 1.08998 * 109.47446 * 184.99961 * 7 6 5 9 9 C 1.53003 * 109.46974 * 304.99773 * 7 6 5 10 10 N 1.46500 * 109.47204 * 64.99561 * 7 6 5 11 11 C 1.34771 * 120.00142 * 155.00019 * 10 7 6 12 12 O 1.21584 * 120.00010 * 0.02562 * 11 10 7 13 13 N 1.34781 * 120.00334 * 180.02562 * 11 10 7 14 14 C 1.39250 * 119.99934 * 184.96075 * 13 11 10 15 15 C 1.39686 * 119.57158 * 174.68017 * 14 13 11 16 16 C 1.38643 * 119.49371 * 179.97438 * 15 14 13 17 17 C 1.38354 * 118.67306 * 359.97438 * 16 15 14 18 18 C 1.40574 * 119.12706 * 0.02562 * 17 16 15 19 19 C 1.41335 * 119.78579 * 179.97438 * 18 17 16 20 20 H 1.07999 * 119.99915 * 5.23688 * 19 18 17 21 21 C 1.40029 * 120.00213 * 185.23927 * 19 18 17 22 22 N 1.30736 * 119.99830 * 354.77472 * 21 19 18 23 23 Si 1.86796 * 119.99989 * 174.77379 * 21 19 18 24 24 H 1.48503 * 109.47369 * 94.99728 * 23 21 19 25 25 H 1.48504 * 109.47052 * 214.99962 * 23 21 19 26 26 H 1.48499 * 109.47478 * 334.99568 * 23 21 19 27 27 N 1.31900 * 119.57596 * 354.40045 * 14 13 11 28 28 H 1.08995 * 109.47624 * 299.99955 * 1 2 3 29 29 H 1.09000 * 109.46724 * 60.00680 * 1 2 3 30 30 H 1.09001 * 109.46847 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47306 * 59.99760 * 3 2 1 32 32 H 1.09001 * 109.46923 * 299.99475 * 3 2 1 33 33 H 1.09003 * 109.46634 * 305.00069 * 4 3 2 34 34 H 1.09004 * 109.46778 * 184.99619 * 4 3 2 35 35 H 1.09003 * 109.47546 * 59.99490 * 6 5 4 36 36 H 1.09002 * 109.47237 * 299.99291 * 6 5 4 37 37 H 1.08998 * 109.46880 * 59.99842 * 9 7 6 38 38 H 1.09004 * 109.46773 * 179.97438 * 9 7 6 39 39 H 1.09002 * 109.46981 * 299.99801 * 9 7 6 40 40 H 0.97000 * 120.00002 * 335.00556 * 10 7 6 41 41 H 0.97001 * 119.99534 * 5.23000 * 13 11 10 42 42 H 1.08004 * 120.25455 * 359.95032 * 15 14 13 43 43 H 1.08001 * 120.66280 * 180.02562 * 16 15 14 44 44 H 1.07998 * 120.43722 * 179.97438 * 17 16 15 45 45 H 0.96999 * 120.00273 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1847 0.0006 5 8 3.9658 0.5793 -1.2201 6 6 5.3821 0.4188 -1.3215 7 6 5.7266 -0.2359 -2.6608 8 1 6.7967 -0.4394 -2.7012 9 6 4.9524 -1.5481 -2.8011 10 7 5.3595 0.6670 -3.7545 11 6 5.9864 0.5744 -4.9440 12 8 6.8562 -0.2588 -5.1095 13 7 5.6490 1.4054 -5.9501 14 6 6.2220 1.2432 -7.2088 15 6 5.7849 2.0361 -8.2725 16 6 6.3568 1.8737 -9.5250 17 6 7.3507 0.9242 -9.6828 18 6 7.7469 0.1574 -8.5733 19 6 8.7605 -0.8167 -8.7189 20 1 9.2866 -0.9124 -9.6572 21 6 9.0825 -1.6578 -7.6467 22 7 8.5190 -1.4759 -6.4811 23 14 10.3171 -3.0398 -7.8818 24 1 11.6642 -2.5768 -7.4620 25 1 9.9158 -4.2077 -7.0571 26 1 10.3528 -3.4335 -9.3132 27 7 7.1743 0.3468 -7.3801 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5137 -0.8901 30 1 -0.3633 -1.0277 -0.0005 31 1 1.6885 1.8464 0.8900 32 1 1.6886 1.8463 -0.8900 33 1 3.8507 0.5685 0.8427 34 1 3.9784 2.1767 0.0901 35 1 5.7355 -0.2134 -0.5069 36 1 5.8638 1.3947 -1.2593 37 1 3.8823 -1.3446 -2.7607 38 1 5.1975 -2.0143 -3.7554 39 1 5.2255 -2.2199 -1.9873 40 1 4.6653 1.3315 -3.6226 41 1 5.0101 2.1188 -5.7962 42 1 5.0070 2.7698 -8.1206 43 1 6.0336 2.4768 -10.3606 44 1 7.8155 0.7736 -10.6460 45 1 8.7423 -2.0583 -5.7382 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000881150644.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:27:06 Heat of formation + Delta-G solvation = -57.460209 kcal Electronic energy + Delta-G solvation = -27437.446678 eV Core-core repulsion = 23456.727423 eV Total energy + Delta-G solvation = -3980.719255 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -39.53624 -38.71300 -37.88175 -37.26863 -34.87293 -33.80735 -32.89439 -31.05303 -30.22053 -29.92965 -28.48851 -26.66550 -26.14230 -25.41979 -22.82681 -22.46833 -21.27494 -20.55296 -19.65843 -18.00150 -17.20397 -17.12349 -16.97840 -16.23505 -15.67699 -15.63405 -15.45354 -14.73214 -14.46870 -14.37005 -14.24242 -13.93273 -13.52880 -13.36673 -12.89390 -12.79105 -12.52051 -12.39280 -12.22006 -11.90840 -11.74680 -11.72237 -11.49028 -11.13479 -11.00784 -10.87623 -10.71368 -10.57945 -10.39535 -9.98932 -9.87089 -9.77325 -9.57999 -8.99657 -8.94134 -8.33670 -7.87141 -7.12028 -6.85012 -6.03648 -4.30988 2.91810 3.20295 3.22716 3.25376 3.33357 3.34146 3.45317 3.51777 4.13475 4.33653 4.68090 4.81354 4.87668 4.91018 5.02676 5.03164 5.04555 5.11771 5.18818 5.20356 5.32048 5.39722 5.45004 5.70704 5.80886 6.05282 6.11990 6.17749 6.33480 6.55986 6.66885 6.71418 6.82164 6.88868 6.92758 7.01202 7.18407 7.32865 7.48260 7.70609 7.85201 7.89299 8.25987 8.39285 8.78053 8.89908 9.14441 9.72314 10.35775 10.57691 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.015489 B = 0.002961 C = 0.002616 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1807.292091 B = 9453.635753 C =10699.847180 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.382 6.382 3 C 0.063 3.937 4 C 0.063 3.937 5 O -0.373 6.373 6 C 0.055 3.945 7 C 0.173 3.827 8 H 0.099 0.901 9 C -0.157 4.157 10 N -0.752 5.752 11 C 0.664 3.336 12 O -0.465 6.465 13 N -0.674 5.674 14 C 0.388 3.612 15 C -0.359 4.359 16 C -0.036 4.036 17 C -0.308 4.308 18 C 0.271 3.729 19 C -0.426 4.426 20 H 0.081 0.919 21 C 0.056 3.944 22 N -0.647 5.647 23 Si 0.893 3.107 24 H -0.273 1.273 25 H -0.278 1.278 26 H -0.264 1.264 27 N -0.471 5.471 28 H 0.038 0.962 29 H 0.042 0.958 30 H 0.086 0.914 31 H 0.061 0.939 32 H 0.058 0.942 33 H 0.056 0.944 34 H 0.063 0.937 35 H 0.061 0.939 36 H 0.054 0.946 37 H 0.061 0.939 38 H 0.063 0.937 39 H 0.054 0.946 40 H 0.387 0.613 41 H 0.394 0.606 42 H 0.089 0.911 43 H 0.095 0.905 44 H 0.095 0.905 45 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.638 5.117 15.922 20.375 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.301 6.301 3 C -0.014 4.014 4 C -0.014 4.014 5 O -0.293 6.293 6 C -0.023 4.023 7 C 0.067 3.933 8 H 0.116 0.884 9 C -0.216 4.216 10 N -0.412 5.412 11 C 0.362 3.638 12 O -0.329 6.329 13 N -0.322 5.322 14 C 0.148 3.852 15 C -0.385 4.385 16 C -0.061 4.061 17 C -0.331 4.331 18 C 0.146 3.854 19 C -0.457 4.457 20 H 0.099 0.901 21 C -0.173 4.173 22 N -0.265 5.265 23 Si 0.718 3.282 24 H -0.198 1.198 25 H -0.203 1.203 26 H -0.188 1.188 27 N -0.189 5.189 28 H 0.057 0.943 29 H 0.060 0.940 30 H 0.104 0.896 31 H 0.079 0.921 32 H 0.077 0.923 33 H 0.074 0.926 34 H 0.081 0.919 35 H 0.079 0.921 36 H 0.072 0.928 37 H 0.080 0.920 38 H 0.082 0.918 39 H 0.073 0.927 40 H 0.219 0.781 41 H 0.227 0.773 42 H 0.108 0.892 43 H 0.113 0.887 44 H 0.113 0.887 45 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -10.504 3.419 16.587 19.929 hybrid contribution -0.620 1.046 -0.385 1.276 sum -11.123 4.466 16.203 20.154 Atomic orbital electron populations 1.22741 0.81145 1.02876 0.99785 1.87978 1.19505 1.27248 1.95345 1.22560 0.92532 0.85534 1.00746 1.22487 0.93222 0.97504 0.88181 1.87980 1.22005 1.81867 1.37400 1.22893 0.81632 0.99879 0.97849 1.20665 1.00283 0.89307 0.83024 0.88357 1.22070 1.00922 0.96428 1.02154 1.45293 1.43408 1.40401 1.12055 1.16461 0.83517 0.83677 0.80164 1.91377 1.28673 1.34068 1.78756 1.42578 1.46668 1.33960 1.09025 1.18352 0.91602 0.92733 0.82493 1.20440 1.12237 1.11416 0.94402 1.20537 0.94784 0.95792 0.94939 1.21614 1.06211 1.05723 0.99556 1.18400 0.90851 0.90430 0.85735 1.19553 1.15099 1.12574 0.98454 0.90067 1.26188 0.97036 0.98652 0.95439 1.70354 1.27944 1.28937 0.99281 0.86545 0.81131 0.81154 0.79376 1.19848 1.20332 1.18789 1.68704 1.09137 1.17967 1.23127 0.94327 0.93967 0.89595 0.92085 0.92337 0.92558 0.91900 0.92085 0.92824 0.91981 0.91789 0.92700 0.78063 0.77335 0.89238 0.88718 0.88666 0.91709 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 11.01 101.05 1.11 1.34 16 2 O -0.38 -4.04 10.67 -40.08 -0.43 -4.46 16 3 C 0.06 0.51 6.32 37.16 0.23 0.74 16 4 C 0.06 0.53 6.32 37.16 0.23 0.77 16 5 O -0.37 -4.24 9.16 -40.08 -0.37 -4.60 16 6 C 0.05 0.59 5.68 37.16 0.21 0.80 16 7 C 0.17 2.50 2.98 -67.93 -0.20 2.29 16 8 H 0.10 1.59 7.58 -51.93 -0.39 1.20 16 9 C -0.16 -2.35 9.29 37.16 0.35 -2.01 16 10 N -0.75 -11.88 5.06 -58.67 -0.30 -12.17 16 11 C 0.66 14.04 8.49 -86.92 -0.74 13.30 16 12 O -0.46 -12.02 11.77 5.29 0.06 -11.95 16 13 N -0.67 -13.91 5.39 -15.78 -0.09 -14.00 16 14 C 0.39 9.79 7.43 -154.99 -1.15 8.64 16 15 C -0.36 -8.32 9.96 -38.89 -0.39 -8.70 16 16 C -0.04 -0.85 10.15 -39.39 -0.40 -1.25 16 17 C -0.31 -7.97 9.83 -38.66 -0.38 -8.35 16 18 C 0.27 7.82 6.55 -85.00 -0.56 7.26 16 19 C -0.43 -12.01 9.13 -37.73 -0.34 -12.35 16 20 H 0.08 2.14 7.85 -52.49 -0.41 1.73 16 21 C 0.06 1.52 5.49 -17.35 -0.10 1.42 16 22 N -0.65 -18.31 9.01 55.55 0.50 -17.81 16 23 Si 0.89 19.69 29.56 -169.99 -5.03 14.66 16 24 H -0.27 -5.93 7.11 56.52 0.40 -5.52 16 25 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 26 H -0.26 -5.71 7.11 56.52 0.40 -5.31 16 27 N -0.47 -13.59 5.75 -10.26 -0.06 -13.65 16 28 H 0.04 0.22 8.14 -51.93 -0.42 -0.21 16 29 H 0.04 0.28 8.14 -51.93 -0.42 -0.14 16 30 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 34 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 35 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.06 0.94 7.56 -51.93 -0.39 0.54 16 38 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 39 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 40 H 0.39 5.14 8.40 -40.82 -0.34 4.80 16 41 H 0.39 6.36 8.72 -40.82 -0.36 6.00 16 42 H 0.09 1.78 8.06 -52.48 -0.42 1.36 16 43 H 0.09 1.88 8.06 -52.49 -0.42 1.46 16 44 H 0.10 2.29 8.06 -52.49 -0.42 1.86 16 45 H 0.27 7.21 8.29 -40.82 -0.34 6.87 16 LS Contribution 378.44 15.07 5.70 5.70 Total: -1.00 -34.91 378.44 -9.06 -43.97 By element: Atomic # 1 Polarization: 17.36 SS G_CDS: -6.95 Total: 10.41 kcal Atomic # 6 Polarization: 6.03 SS G_CDS: -2.12 Total: 3.91 kcal Atomic # 7 Polarization: -57.69 SS G_CDS: 0.06 Total: -57.63 kcal Atomic # 8 Polarization: -20.29 SS G_CDS: -0.73 Total: -21.02 kcal Atomic # 14 Polarization: 19.69 SS G_CDS: -5.03 Total: 14.66 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -34.91 -9.06 -43.97 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881150644.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.491 kcal (2) G-P(sol) polarization free energy of solvation -34.908 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.399 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.969 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds