Wall clock time and date at job start Tue Mar 31 2020 14:27:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42898 * 113.99840 * 2 1 4 4 C 1.53006 * 109.47207 * 179.97438 * 3 2 1 5 5 O 1.42895 * 109.46856 * 65.00020 * 4 3 2 6 6 C 1.42897 * 113.99779 * 180.02562 * 5 4 3 7 7 C 1.53003 * 109.47236 * 179.97438 * 6 5 4 8 8 H 1.08998 * 109.47446 * 184.99961 * 7 6 5 9 9 C 1.53003 * 109.46974 * 304.99773 * 7 6 5 10 10 N 1.46500 * 109.47204 * 64.99561 * 7 6 5 11 11 C 1.34771 * 120.00142 * 155.00019 * 10 7 6 12 12 O 1.21584 * 120.00010 * 0.02562 * 11 10 7 13 13 N 1.34781 * 120.00334 * 180.02562 * 11 10 7 14 14 C 1.39250 * 119.99934 * 184.96075 * 13 11 10 15 15 C 1.39686 * 119.57158 * 174.68017 * 14 13 11 16 16 C 1.38643 * 119.49371 * 179.97438 * 15 14 13 17 17 C 1.38354 * 118.67306 * 359.97438 * 16 15 14 18 18 C 1.40574 * 119.12706 * 0.02562 * 17 16 15 19 19 C 1.41335 * 119.78579 * 179.97438 * 18 17 16 20 20 H 1.07999 * 119.99915 * 5.23688 * 19 18 17 21 21 C 1.40029 * 120.00213 * 185.23927 * 19 18 17 22 22 N 1.30736 * 119.99830 * 354.77472 * 21 19 18 23 23 Si 1.86796 * 119.99989 * 174.77379 * 21 19 18 24 24 H 1.48503 * 109.47369 * 94.99728 * 23 21 19 25 25 H 1.48504 * 109.47052 * 214.99962 * 23 21 19 26 26 H 1.48499 * 109.47478 * 334.99568 * 23 21 19 27 27 N 1.31900 * 119.57596 * 354.40045 * 14 13 11 28 28 H 1.08995 * 109.47624 * 299.99955 * 1 2 3 29 29 H 1.09000 * 109.46724 * 60.00680 * 1 2 3 30 30 H 1.09001 * 109.46847 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47306 * 59.99760 * 3 2 1 32 32 H 1.09001 * 109.46923 * 299.99475 * 3 2 1 33 33 H 1.09003 * 109.46634 * 305.00069 * 4 3 2 34 34 H 1.09004 * 109.46778 * 184.99619 * 4 3 2 35 35 H 1.09003 * 109.47546 * 59.99490 * 6 5 4 36 36 H 1.09002 * 109.47237 * 299.99291 * 6 5 4 37 37 H 1.08998 * 109.46880 * 59.99842 * 9 7 6 38 38 H 1.09004 * 109.46773 * 179.97438 * 9 7 6 39 39 H 1.09002 * 109.46981 * 299.99801 * 9 7 6 40 40 H 0.97000 * 120.00002 * 335.00556 * 10 7 6 41 41 H 0.97001 * 119.99534 * 5.23000 * 13 11 10 42 42 H 1.08004 * 120.25455 * 359.95032 * 15 14 13 43 43 H 1.08001 * 120.66280 * 180.02562 * 16 15 14 44 44 H 1.07998 * 120.43722 * 179.97438 * 17 16 15 45 45 H 0.96999 * 120.00273 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1847 0.0006 5 8 3.9658 0.5793 -1.2201 6 6 5.3821 0.4188 -1.3215 7 6 5.7266 -0.2359 -2.6608 8 1 6.7967 -0.4394 -2.7012 9 6 4.9524 -1.5481 -2.8011 10 7 5.3595 0.6670 -3.7545 11 6 5.9864 0.5744 -4.9440 12 8 6.8562 -0.2588 -5.1095 13 7 5.6490 1.4054 -5.9501 14 6 6.2220 1.2432 -7.2088 15 6 5.7849 2.0361 -8.2725 16 6 6.3568 1.8737 -9.5250 17 6 7.3507 0.9242 -9.6828 18 6 7.7469 0.1574 -8.5733 19 6 8.7605 -0.8167 -8.7189 20 1 9.2866 -0.9124 -9.6572 21 6 9.0825 -1.6578 -7.6467 22 7 8.5190 -1.4759 -6.4811 23 14 10.3171 -3.0398 -7.8818 24 1 11.6642 -2.5768 -7.4620 25 1 9.9158 -4.2077 -7.0571 26 1 10.3528 -3.4335 -9.3132 27 7 7.1743 0.3468 -7.3801 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5137 -0.8901 30 1 -0.3633 -1.0277 -0.0005 31 1 1.6885 1.8464 0.8900 32 1 1.6886 1.8463 -0.8900 33 1 3.8507 0.5685 0.8427 34 1 3.9784 2.1767 0.0901 35 1 5.7355 -0.2134 -0.5069 36 1 5.8638 1.3947 -1.2593 37 1 3.8823 -1.3446 -2.7607 38 1 5.1975 -2.0143 -3.7554 39 1 5.2255 -2.2199 -1.9873 40 1 4.6653 1.3315 -3.6226 41 1 5.0101 2.1188 -5.7962 42 1 5.0070 2.7698 -8.1206 43 1 6.0336 2.4768 -10.3606 44 1 7.8155 0.7736 -10.6460 45 1 8.7423 -2.0583 -5.7382 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000881150644.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:27:06 Heat of formation + Delta-G solvation = -82.097474 kcal Electronic energy + Delta-G solvation = -27438.515030 eV Core-core repulsion = 23456.727423 eV Total energy + Delta-G solvation = -3981.787607 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.14974 -39.81301 -39.23710 -38.27101 -36.26759 -35.58527 -34.78482 -32.35636 -32.07079 -30.95788 -30.21458 -27.48208 -27.36504 -26.94955 -24.17528 -23.44813 -23.15518 -22.01529 -21.22682 -19.79120 -18.79658 -18.16157 -17.78517 -17.64681 -16.85904 -16.37333 -16.35082 -16.25728 -16.21259 -15.93722 -15.59769 -15.48189 -14.96403 -14.62366 -14.45498 -14.32696 -13.95457 -13.71634 -13.28111 -13.18085 -12.92486 -12.88559 -12.68533 -12.63024 -12.53154 -12.28561 -12.23841 -11.89967 -11.84395 -11.75260 -11.44501 -10.83445 -10.79366 -10.61049 -10.51632 -9.87874 -9.77519 -9.06799 -8.74502 -7.99412 -6.37526 0.99964 1.31379 1.40848 1.52621 1.56409 1.86038 2.29042 2.59657 2.72467 2.91585 3.07629 3.43135 3.86594 4.09305 4.13389 4.20774 4.27601 4.38655 4.41245 4.48402 4.51335 4.55618 4.61466 4.63195 4.70655 4.75583 4.83726 4.86334 4.88190 4.89230 4.99446 5.08577 5.09840 5.30909 5.39430 5.70168 5.80602 5.89830 5.95600 6.08192 6.20501 6.34100 6.35884 6.46629 6.85720 7.10972 7.32297 8.07958 8.41981 8.61858 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.015489 B = 0.002961 C = 0.002616 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1807.292091 B = 9453.635753 C =10699.847180 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.415 6.415 3 C 0.059 3.941 4 C 0.057 3.943 5 O -0.394 6.394 6 C 0.068 3.932 7 C 0.169 3.831 8 H 0.077 0.923 9 C -0.145 4.145 10 N -0.729 5.729 11 C 0.657 3.343 12 O -0.514 6.514 13 N -0.663 5.663 14 C 0.365 3.635 15 C -0.347 4.347 16 C -0.034 4.034 17 C -0.332 4.332 18 C 0.236 3.764 19 C -0.466 4.466 20 H 0.085 0.915 21 C 0.009 3.991 22 N -0.682 5.682 23 Si 0.974 3.026 24 H -0.265 1.265 25 H -0.275 1.275 26 H -0.257 1.257 27 N -0.506 5.506 28 H 0.056 0.944 29 H 0.044 0.956 30 H 0.088 0.912 31 H 0.087 0.913 32 H 0.057 0.943 33 H 0.060 0.940 34 H 0.087 0.913 35 H 0.079 0.921 36 H 0.069 0.931 37 H 0.061 0.939 38 H 0.023 0.977 39 H 0.073 0.927 40 H 0.403 0.597 41 H 0.416 0.584 42 H 0.131 0.869 43 H 0.137 0.863 44 H 0.104 0.896 45 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.846 6.519 17.008 22.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.334 6.334 3 C -0.018 4.018 4 C -0.019 4.019 5 O -0.314 6.314 6 C -0.009 4.009 7 C 0.064 3.936 8 H 0.095 0.905 9 C -0.204 4.204 10 N -0.389 5.389 11 C 0.355 3.645 12 O -0.382 6.382 13 N -0.313 5.313 14 C 0.125 3.875 15 C -0.373 4.373 16 C -0.058 4.058 17 C -0.355 4.355 18 C 0.110 3.890 19 C -0.497 4.497 20 H 0.103 0.897 21 C -0.217 4.217 22 N -0.301 5.301 23 Si 0.795 3.205 24 H -0.190 1.190 25 H -0.200 1.200 26 H -0.180 1.180 27 N -0.225 5.225 28 H 0.075 0.925 29 H 0.062 0.938 30 H 0.106 0.894 31 H 0.105 0.895 32 H 0.075 0.925 33 H 0.078 0.922 34 H 0.105 0.895 35 H 0.097 0.903 36 H 0.087 0.913 37 H 0.080 0.920 38 H 0.042 0.958 39 H 0.092 0.908 40 H 0.238 0.762 41 H 0.252 0.748 42 H 0.149 0.851 43 H 0.155 0.845 44 H 0.122 0.878 45 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -11.783 4.885 17.712 21.827 hybrid contribution -0.431 0.765 -0.688 1.115 sum -12.215 5.649 17.024 21.701 Atomic orbital electron populations 1.22871 0.79900 1.03433 1.00759 1.87927 1.21094 1.28843 1.95584 1.22729 0.92251 0.84890 1.01892 1.22719 0.93593 0.98571 0.86984 1.87943 1.21791 1.82517 1.39109 1.22707 0.82041 1.00619 0.95577 1.20762 0.99070 0.89295 0.84464 0.90461 1.21941 1.00855 0.96944 1.00650 1.45054 1.42775 1.40505 1.10603 1.16743 0.83332 0.83147 0.81240 1.91370 1.30974 1.35982 1.79841 1.42429 1.46638 1.34546 1.07735 1.18856 0.91410 0.92576 0.84610 1.20913 1.11982 1.10774 0.93590 1.21018 0.93362 0.94999 0.96429 1.21799 1.07666 1.06710 0.99284 1.18901 0.91700 0.91477 0.86882 1.19871 1.16411 1.14131 0.99300 0.89722 1.27051 0.98883 1.00995 0.94799 1.70561 1.29597 1.30014 0.99928 0.85333 0.78301 0.77432 0.79454 1.19046 1.19959 1.18021 1.68661 1.10637 1.19592 1.23631 0.92541 0.93751 0.89384 0.89536 0.92500 0.92214 0.89548 0.90268 0.91311 0.91969 0.95795 0.90780 0.76164 0.74751 0.85146 0.84499 0.87807 0.92071 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.35 11.01 113.37 1.25 1.60 16 2 O -0.41 -8.15 10.67 -144.34 -1.54 -9.69 16 3 C 0.06 0.81 6.32 71.98 0.45 1.27 16 4 C 0.06 0.82 6.32 71.98 0.45 1.27 16 5 O -0.39 -8.08 9.16 -144.34 -1.32 -9.40 16 6 C 0.07 1.33 5.68 71.98 0.41 1.74 16 7 C 0.17 4.86 2.98 44.99 0.13 4.99 16 8 H 0.08 2.59 7.58 -2.39 -0.02 2.57 16 9 C -0.15 -4.41 9.29 71.98 0.67 -3.75 16 10 N -0.73 -22.74 5.06 -457.81 -2.32 -25.05 16 11 C 0.66 28.22 8.49 179.05 1.52 29.74 16 12 O -0.51 -27.78 11.77 -3.98 -0.05 -27.82 16 13 N -0.66 -27.04 5.39 -322.11 -1.74 -28.78 16 14 C 0.37 18.41 7.43 133.26 0.99 19.40 16 15 C -0.35 -15.32 9.96 22.72 0.23 -15.09 16 16 C -0.03 -1.52 10.15 22.39 0.23 -1.29 16 17 C -0.33 -17.27 9.83 22.87 0.22 -17.04 16 18 C 0.24 14.07 6.55 40.19 0.26 14.34 16 19 C -0.47 -27.35 9.13 23.47 0.21 -27.14 16 20 H 0.08 4.65 7.85 -2.91 -0.02 4.63 16 21 C 0.01 0.48 5.49 85.29 0.47 0.95 16 22 N -0.68 -40.52 9.01 21.84 0.20 -40.32 16 23 Si 0.97 41.96 29.56 68.60 2.03 43.99 16 24 H -0.27 -11.00 7.11 99.48 0.71 -10.29 16 25 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 26 H -0.26 -10.60 7.11 99.48 0.71 -9.89 16 27 N -0.51 -30.11 5.75 -186.36 -1.07 -31.18 16 28 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 29 H 0.04 0.54 8.14 -2.39 -0.02 0.52 16 30 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 31 H 0.09 0.74 8.14 -2.39 -0.02 0.72 16 32 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 33 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 34 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 35 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 36 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 37 H 0.06 1.87 7.56 -2.39 -0.02 1.85 16 38 H 0.02 0.89 8.14 -2.39 -0.02 0.87 16 39 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 40 H 0.40 10.04 8.40 -92.71 -0.78 9.26 16 41 H 0.42 12.62 8.72 -92.71 -0.81 11.81 16 42 H 0.13 4.62 8.06 -2.91 -0.02 4.60 16 43 H 0.14 4.90 8.06 -2.91 -0.02 4.88 16 44 H 0.10 5.04 8.06 -2.91 -0.02 5.01 16 45 H 0.27 15.07 8.29 -92.71 -0.77 14.30 16 Total: -1.00 -80.10 378.44 1.11 -78.99 By element: Atomic # 1 Polarization: 38.86 SS G_CDS: -0.58 Total: 38.28 kcal Atomic # 6 Polarization: 3.49 SS G_CDS: 7.50 Total: 10.99 kcal Atomic # 7 Polarization: -120.40 SS G_CDS: -4.93 Total: -125.33 kcal Atomic # 8 Polarization: -44.01 SS G_CDS: -2.91 Total: -46.92 kcal Atomic # 14 Polarization: 41.96 SS G_CDS: 2.03 Total: 43.99 kcal Total: -80.10 1.11 -78.99 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881150644.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.107 kcal (2) G-P(sol) polarization free energy of solvation -80.105 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.212 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.114 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.990 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.097 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds