Wall clock time and date at job start Tue Mar 31 2020 14:39:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.45196 * 109.47258 * 2 1 4 4 C 1.34225 * 117.00008 * 180.02562 * 3 2 1 5 5 O 1.20827 * 120.00165 * 359.97438 * 4 3 2 6 6 C 1.50703 * 119.99913 * 179.97438 * 4 3 2 7 7 N 1.46500 * 109.46891 * 179.97438 * 6 4 3 8 8 C 1.46500 * 120.00167 * 276.27039 * 7 6 4 9 9 C 1.52992 * 109.47345 * 270.01522 * 8 7 6 10 10 C 1.34775 * 120.00022 * 96.27525 * 7 6 4 11 11 O 1.21603 * 120.00099 * 185.88562 * 10 7 6 12 12 C 1.47431 * 119.99996 * 5.88833 * 10 7 6 13 13 C 1.41292 * 126.40981 * 333.02134 * 12 10 7 14 14 N 1.30453 * 108.01743 * 179.72207 * 13 12 10 15 15 N 1.39932 * 108.89854 * 0.40995 * 14 13 12 16 16 C 1.46500 * 125.75423 * 179.84694 * 15 14 13 17 17 C 1.50697 * 109.47170 * 269.69049 * 16 15 14 18 18 H 1.08001 * 119.99922 * 359.97438 * 17 16 15 19 19 C 1.37883 * 119.99912 * 179.72601 * 17 16 15 20 20 N 1.31511 * 119.99807 * 0.27191 * 19 17 16 21 21 Si 1.86798 * 119.99910 * 180.27413 * 19 17 16 22 22 H 1.48506 * 109.47012 * 90.00180 * 21 19 17 23 23 H 1.48505 * 109.47093 * 209.99703 * 21 19 17 24 24 H 1.48495 * 109.47279 * 329.99877 * 21 19 17 25 25 C 1.34255 * 108.49186 * 359.57883 * 15 14 13 26 26 C 1.50698 * 126.29220 * 180.22025 * 25 15 14 27 27 H 1.08999 * 109.47101 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.47085 * 300.00132 * 1 2 3 29 29 H 1.09001 * 109.46875 * 59.99798 * 1 2 3 30 30 H 1.09001 * 109.46591 * 239.99948 * 2 1 3 31 31 H 1.09001 * 109.46875 * 120.00202 * 2 1 3 32 32 H 1.09006 * 109.47004 * 60.00126 * 6 4 3 33 33 H 1.08997 * 109.47424 * 299.99947 * 6 4 3 34 34 H 1.09002 * 109.46910 * 30.01612 * 8 7 6 35 35 H 1.08997 * 109.47135 * 150.00847 * 8 7 6 36 36 H 1.09007 * 109.47447 * 180.02562 * 9 8 7 37 37 H 1.09007 * 109.47187 * 299.99420 * 9 8 7 38 38 H 1.08997 * 109.47554 * 59.99583 * 9 8 7 39 39 H 1.07996 * 125.99325 * 359.95773 * 13 12 10 40 40 H 1.09003 * 109.47138 * 149.68339 * 16 15 14 41 41 H 1.09002 * 109.46937 * 29.69095 * 16 15 14 42 42 H 0.97005 * 120.00102 * 180.02562 * 20 19 17 43 43 H 1.08996 * 109.47164 * 90.00824 * 26 25 15 44 44 H 1.09007 * 109.47133 * 210.00495 * 26 25 15 45 45 H 1.08999 * 109.47255 * 330.00457 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0141 1.3689 0.0000 4 6 3.3447 1.5447 -0.0005 5 8 4.0808 0.5865 -0.0005 6 6 3.9208 2.9373 -0.0012 7 7 5.3838 2.8606 -0.0010 8 6 6.1080 2.6844 1.2602 9 6 6.4349 4.0550 1.8564 10 6 6.0635 2.9522 -1.1612 11 8 7.2674 2.7818 -1.1757 12 6 5.3473 3.2589 -2.4129 13 6 3.9933 2.9715 -2.6965 14 7 3.7331 3.4016 -3.9002 15 7 4.8934 3.9678 -4.4400 16 6 5.0158 4.5609 -5.7739 17 6 5.4367 3.5005 -6.7585 18 1 5.5974 2.4863 -6.4239 19 6 5.6117 3.8241 -8.0873 20 7 5.4165 5.0592 -8.4946 21 14 6.1261 2.5080 -9.3091 22 1 4.9164 1.8645 -9.8820 23 1 6.9202 3.1284 -10.3999 24 1 6.9503 1.4849 -8.6170 25 6 5.8739 3.8810 -3.5270 26 6 7.2894 4.3720 -3.6890 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 3.5851 3.4698 0.8889 33 1 3.5846 3.4693 -0.8911 34 1 5.4887 2.1224 1.9593 35 1 7.0331 2.1388 1.0748 36 1 6.9741 3.9239 2.7946 37 1 7.0543 4.6170 1.1572 38 1 5.5097 4.6007 2.0418 39 1 3.2951 2.4849 -2.0317 40 1 5.7636 5.3537 -5.7518 41 1 4.0546 4.9765 -6.0764 42 1 5.5393 5.2868 -9.4295 43 1 7.3571 5.4047 -3.3472 44 1 7.9601 3.7488 -3.0973 45 1 7.5750 4.3175 -4.7395 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000888344804.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:39:38 Heat of formation + Delta-G solvation = -39.535859 kcal Electronic energy + Delta-G solvation = -28129.737373 eV Core-core repulsion = 24149.795376 eV Total energy + Delta-G solvation = -3979.941997 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.26118 -40.45301 -39.05664 -36.85971 -35.57957 -33.98307 -32.44304 -32.02495 -31.66523 -30.75547 -28.24365 -27.43271 -26.61396 -23.97423 -23.57252 -23.07681 -21.69874 -21.16376 -19.82865 -18.53259 -17.99358 -17.08041 -16.88818 -16.77873 -16.29582 -16.05595 -15.46897 -14.80684 -14.70853 -14.40534 -14.14864 -13.86259 -13.64798 -13.42675 -13.32074 -13.00512 -12.69291 -12.56474 -12.47207 -12.35081 -12.11768 -12.05874 -11.93876 -11.81149 -11.59444 -11.51326 -11.12564 -11.06339 -10.90015 -10.74251 -10.71523 -10.37269 -10.25910 -9.95112 -9.47208 -8.83225 -8.72139 -8.62032 -7.97669 -6.34966 -4.42841 2.01048 2.04709 2.37659 2.72509 3.00276 3.18588 3.24911 3.27231 3.36554 3.70976 4.24078 4.49599 4.68418 4.71867 4.76801 4.79992 4.98791 5.03674 5.05244 5.09843 5.18282 5.26026 5.31003 5.41177 5.46216 5.54968 5.62167 5.69333 5.74011 5.80865 5.92563 6.01013 6.11156 6.26314 6.40568 6.48329 6.55664 6.72807 6.86304 7.07087 7.38251 7.54389 7.62466 7.74058 7.75882 8.29279 8.45388 8.63189 9.24490 10.73159 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.012401 B = 0.003683 C = 0.003076 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2257.402611 B = 7599.987388 C = 9101.317523 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.061 3.939 3 O -0.359 6.359 4 C 0.434 3.566 5 O -0.490 6.490 6 C 0.100 3.900 7 N -0.599 5.599 8 C 0.116 3.884 9 C -0.167 4.167 10 C 0.612 3.388 11 O -0.538 6.538 12 C -0.332 4.332 13 C 0.039 3.961 14 N -0.287 5.287 15 N -0.310 5.310 16 C 0.251 3.749 17 C -0.542 4.542 18 H 0.066 0.934 19 C 0.069 3.931 20 N -0.889 5.889 21 Si 0.908 3.092 22 H -0.277 1.277 23 H -0.282 1.282 24 H -0.271 1.271 25 C 0.166 3.834 26 C -0.103 4.103 27 H 0.078 0.922 28 H 0.066 0.934 29 H 0.070 0.930 30 H 0.072 0.928 31 H 0.068 0.932 32 H 0.118 0.882 33 H 0.145 0.855 34 H 0.071 0.929 35 H 0.088 0.912 36 H 0.065 0.935 37 H 0.062 0.938 38 H 0.055 0.945 39 H 0.174 0.826 40 H 0.058 0.942 41 H 0.058 0.942 42 H 0.269 0.731 43 H 0.076 0.924 44 H 0.097 0.903 45 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.610 -2.526 20.034 20.957 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.013 4.013 3 O -0.276 6.276 4 C 0.274 3.726 5 O -0.376 6.376 6 C -0.026 4.026 7 N -0.333 5.333 8 C -0.007 4.007 9 C -0.225 4.225 10 C 0.404 3.596 11 O -0.415 6.415 12 C -0.347 4.347 13 C -0.147 4.147 14 N -0.107 5.107 15 N -0.087 5.087 16 C 0.134 3.866 17 C -0.580 4.580 18 H 0.084 0.916 19 C -0.135 4.135 20 N -0.527 5.527 21 Si 0.734 3.266 22 H -0.202 1.202 23 H -0.208 1.208 24 H -0.195 1.195 25 C 0.029 3.971 26 C -0.161 4.161 27 H 0.097 0.903 28 H 0.085 0.915 29 H 0.089 0.911 30 H 0.090 0.910 31 H 0.087 0.913 32 H 0.136 0.864 33 H 0.162 0.838 34 H 0.089 0.911 35 H 0.107 0.893 36 H 0.084 0.916 37 H 0.081 0.919 38 H 0.074 0.926 39 H 0.190 0.810 40 H 0.075 0.925 41 H 0.076 0.924 42 H 0.079 0.921 43 H 0.094 0.906 44 H 0.116 0.884 45 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -5.654 -2.633 18.764 19.774 hybrid contribution 0.545 -1.095 -0.099 1.227 sum -5.109 -3.728 18.665 19.708 Atomic orbital electron populations 1.21813 0.92494 1.02984 1.03680 1.23046 0.95433 0.80087 1.02697 1.86510 1.24303 1.32670 1.84085 1.24610 0.80896 0.93813 0.73238 1.90708 1.60338 1.42764 1.43756 1.21606 0.81957 0.90578 1.08425 1.47395 1.04186 1.74267 1.07416 1.21379 0.98064 0.97306 0.83901 1.22155 1.01821 0.97543 1.01018 1.17354 0.86079 0.74351 0.81780 1.90693 1.14459 1.50374 1.85954 1.19642 0.95698 1.21835 0.97564 1.23947 0.94613 1.01233 0.94868 1.77161 1.08049 1.15981 1.09548 1.49409 1.05127 1.40354 1.13810 1.19885 1.00004 0.94141 0.72590 1.21265 1.48426 0.95755 0.92575 0.91605 1.24912 0.94583 0.96008 0.98043 1.69910 1.47867 1.17721 1.17165 0.86326 0.78838 0.81195 0.80220 1.20233 1.20755 1.19538 1.21407 0.92687 0.95147 0.87862 1.20659 0.89169 1.01469 1.04801 0.90292 0.91519 0.91136 0.90996 0.91343 0.86414 0.83769 0.91096 0.89342 0.91641 0.91919 0.92609 0.80969 0.92452 0.92386 0.92092 0.90561 0.88420 0.89460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.05 10.29 37.16 0.38 -0.67 16 2 C 0.06 0.58 6.19 37.16 0.23 0.81 16 3 O -0.36 -3.98 10.22 -39.24 -0.40 -4.39 16 4 C 0.43 5.48 6.33 36.01 0.23 5.71 16 5 O -0.49 -7.80 16.13 -18.75 -0.30 -8.10 16 6 C 0.10 1.10 5.52 -5.19 -0.03 1.07 16 7 N -0.60 -8.18 1.98 -176.33 -0.35 -8.53 16 8 C 0.12 1.32 6.13 -4.05 -0.02 1.29 16 9 C -0.17 -1.54 10.24 37.15 0.38 -1.16 16 10 C 0.61 10.78 7.56 -12.52 -0.09 10.68 16 11 O -0.54 -10.68 14.72 5.27 0.08 -10.60 16 12 C -0.33 -6.28 5.72 -105.06 -0.60 -6.88 16 13 C 0.04 0.72 9.61 -16.98 -0.16 0.56 16 14 N -0.29 -6.22 12.50 30.86 0.39 -5.83 16 15 N -0.31 -6.97 3.56 -57.78 -0.21 -7.18 16 16 C 0.25 6.17 5.78 -5.19 -0.03 6.14 16 17 C -0.54 -14.61 9.39 -34.44 -0.32 -14.94 16 18 H 0.07 1.85 7.81 -52.49 -0.41 1.44 16 19 C 0.07 1.83 5.46 -17.82 -0.10 1.74 16 20 N -0.89 -24.41 13.29 55.43 0.74 -23.68 16 21 Si 0.91 20.92 29.54 -169.99 -5.02 15.90 16 22 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 23 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 24 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 25 C 0.17 3.38 7.00 -81.60 -0.57 2.81 16 26 C -0.10 -1.83 9.62 36.00 0.35 -1.48 16 27 H 0.08 0.42 8.14 -51.93 -0.42 -0.01 16 28 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.07 0.75 8.13 -51.93 -0.42 0.33 16 31 H 0.07 0.61 8.13 -51.93 -0.42 0.19 16 32 H 0.12 0.84 8.12 -51.93 -0.42 0.42 16 33 H 0.15 1.67 4.14 -51.93 -0.21 1.45 16 34 H 0.07 0.69 8.07 -51.93 -0.42 0.27 16 35 H 0.09 1.17 7.35 -51.93 -0.38 0.79 16 36 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 39 H 0.17 2.64 4.40 -52.49 -0.23 2.40 16 40 H 0.06 1.39 7.62 -51.93 -0.40 0.99 16 41 H 0.06 1.51 8.14 -51.93 -0.42 1.09 16 42 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 43 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 44 H 0.10 1.74 6.41 -51.93 -0.33 1.41 16 45 H 0.09 1.62 7.70 -51.93 -0.40 1.22 16 LS Contribution 379.43 15.07 5.72 5.72 Total: -1.00 -32.65 379.43 -6.30 -38.94 By element: Atomic # 1 Polarization: 8.63 SS G_CDS: -6.57 Total: 2.06 kcal Atomic # 6 Polarization: 6.06 SS G_CDS: -0.37 Total: 5.69 kcal Atomic # 7 Polarization: -45.79 SS G_CDS: 0.57 Total: -45.22 kcal Atomic # 8 Polarization: -22.47 SS G_CDS: -0.63 Total: -23.09 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.90 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -32.65 -6.30 -38.94 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000888344804.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.592 kcal (2) G-P(sol) polarization free energy of solvation -32.648 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.240 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.296 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.944 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.536 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds