Wall clock time and date at job start Tue Mar 31 2020 14:39:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.45196 * 109.47258 * 2 1 4 4 C 1.34225 * 117.00008 * 180.02562 * 3 2 1 5 5 O 1.20827 * 120.00165 * 359.97438 * 4 3 2 6 6 C 1.50703 * 119.99913 * 179.97438 * 4 3 2 7 7 N 1.46500 * 109.46891 * 179.97438 * 6 4 3 8 8 C 1.46500 * 120.00167 * 276.27039 * 7 6 4 9 9 C 1.52992 * 109.47345 * 270.01522 * 8 7 6 10 10 C 1.34775 * 120.00022 * 96.27525 * 7 6 4 11 11 O 1.21603 * 120.00099 * 185.88562 * 10 7 6 12 12 C 1.47431 * 119.99996 * 5.88833 * 10 7 6 13 13 C 1.41292 * 126.40981 * 333.02134 * 12 10 7 14 14 N 1.30453 * 108.01743 * 179.72207 * 13 12 10 15 15 N 1.39932 * 108.89854 * 0.40995 * 14 13 12 16 16 C 1.46500 * 125.75423 * 179.84694 * 15 14 13 17 17 C 1.50697 * 109.47170 * 269.69049 * 16 15 14 18 18 H 1.08001 * 119.99922 * 359.97438 * 17 16 15 19 19 C 1.37883 * 119.99912 * 179.72601 * 17 16 15 20 20 N 1.31511 * 119.99807 * 0.27191 * 19 17 16 21 21 Si 1.86798 * 119.99910 * 180.27413 * 19 17 16 22 22 H 1.48506 * 109.47012 * 90.00180 * 21 19 17 23 23 H 1.48505 * 109.47093 * 209.99703 * 21 19 17 24 24 H 1.48495 * 109.47279 * 329.99877 * 21 19 17 25 25 C 1.34255 * 108.49186 * 359.57883 * 15 14 13 26 26 C 1.50698 * 126.29220 * 180.22025 * 25 15 14 27 27 H 1.08999 * 109.47101 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.47085 * 300.00132 * 1 2 3 29 29 H 1.09001 * 109.46875 * 59.99798 * 1 2 3 30 30 H 1.09001 * 109.46591 * 239.99948 * 2 1 3 31 31 H 1.09001 * 109.46875 * 120.00202 * 2 1 3 32 32 H 1.09006 * 109.47004 * 60.00126 * 6 4 3 33 33 H 1.08997 * 109.47424 * 299.99947 * 6 4 3 34 34 H 1.09002 * 109.46910 * 30.01612 * 8 7 6 35 35 H 1.08997 * 109.47135 * 150.00847 * 8 7 6 36 36 H 1.09007 * 109.47447 * 180.02562 * 9 8 7 37 37 H 1.09007 * 109.47187 * 299.99420 * 9 8 7 38 38 H 1.08997 * 109.47554 * 59.99583 * 9 8 7 39 39 H 1.07996 * 125.99325 * 359.95773 * 13 12 10 40 40 H 1.09003 * 109.47138 * 149.68339 * 16 15 14 41 41 H 1.09002 * 109.46937 * 29.69095 * 16 15 14 42 42 H 0.97005 * 120.00102 * 180.02562 * 20 19 17 43 43 H 1.08996 * 109.47164 * 90.00824 * 26 25 15 44 44 H 1.09007 * 109.47133 * 210.00495 * 26 25 15 45 45 H 1.08999 * 109.47255 * 330.00457 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0141 1.3689 0.0000 4 6 3.3447 1.5447 -0.0005 5 8 4.0808 0.5865 -0.0005 6 6 3.9208 2.9373 -0.0012 7 7 5.3838 2.8606 -0.0010 8 6 6.1080 2.6844 1.2602 9 6 6.4349 4.0550 1.8564 10 6 6.0635 2.9522 -1.1612 11 8 7.2674 2.7818 -1.1757 12 6 5.3473 3.2589 -2.4129 13 6 3.9933 2.9715 -2.6965 14 7 3.7331 3.4016 -3.9002 15 7 4.8934 3.9678 -4.4400 16 6 5.0158 4.5609 -5.7739 17 6 5.4367 3.5005 -6.7585 18 1 5.5974 2.4863 -6.4239 19 6 5.6117 3.8241 -8.0873 20 7 5.4165 5.0592 -8.4946 21 14 6.1261 2.5080 -9.3091 22 1 4.9164 1.8645 -9.8820 23 1 6.9202 3.1284 -10.3999 24 1 6.9503 1.4849 -8.6170 25 6 5.8739 3.8810 -3.5270 26 6 7.2894 4.3720 -3.6890 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 3.5851 3.4698 0.8889 33 1 3.5846 3.4693 -0.8911 34 1 5.4887 2.1224 1.9593 35 1 7.0331 2.1388 1.0748 36 1 6.9741 3.9239 2.7946 37 1 7.0543 4.6170 1.1572 38 1 5.5097 4.6007 2.0418 39 1 3.2951 2.4849 -2.0317 40 1 5.7636 5.3537 -5.7518 41 1 4.0546 4.9765 -6.0764 42 1 5.5393 5.2868 -9.4295 43 1 7.3571 5.4047 -3.3472 44 1 7.9601 3.7488 -3.0973 45 1 7.5750 4.3175 -4.7395 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000888344804.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:39:37 Heat of formation + Delta-G solvation = -58.784588 kcal Electronic energy + Delta-G solvation = -28130.572061 eV Core-core repulsion = 24149.795376 eV Total energy + Delta-G solvation = -3980.776685 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.67322 -41.61192 -40.32912 -37.89164 -36.75814 -35.86017 -34.04499 -33.16997 -32.71636 -32.02496 -29.33971 -29.15536 -28.11462 -25.62111 -24.45844 -24.31097 -22.82209 -22.40719 -21.24700 -19.92073 -18.97349 -18.87082 -18.38878 -17.89231 -17.34502 -17.15045 -17.01814 -16.42636 -16.17854 -15.75092 -15.39920 -15.00030 -14.84934 -14.58316 -14.41981 -14.32194 -13.98684 -13.80235 -13.65068 -13.60046 -13.50536 -13.27441 -13.03322 -12.95474 -12.85453 -12.75335 -12.63176 -12.49509 -12.33335 -11.93392 -11.86695 -11.84919 -11.78799 -11.53001 -10.90665 -10.77389 -10.32941 -9.95892 -9.54439 -8.39696 -6.55578 0.58736 0.96512 1.16172 1.35719 1.36939 1.43478 1.47185 1.60592 1.98835 2.31217 2.35250 2.92704 3.43497 3.59915 3.67798 3.81808 3.92392 4.03064 4.09198 4.09927 4.19603 4.26451 4.31945 4.36525 4.44338 4.57781 4.62645 4.76308 4.82914 4.85520 4.88485 4.95634 4.98969 5.08949 5.10168 5.15601 5.36081 5.42260 5.42958 5.48370 5.54529 5.73197 5.98697 6.16220 6.52445 6.64184 6.70283 7.12086 7.15640 8.68138 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.012401 B = 0.003683 C = 0.003076 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2257.402611 B = 7599.987388 C = 9101.317523 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.053 3.947 3 O -0.354 6.354 4 C 0.438 3.562 5 O -0.527 6.527 6 C 0.098 3.902 7 N -0.592 5.592 8 C 0.112 3.888 9 C -0.159 4.159 10 C 0.610 3.390 11 O -0.567 6.567 12 C -0.332 4.332 13 C 0.059 3.941 14 N -0.322 5.322 15 N -0.331 5.331 16 C 0.267 3.733 17 C -0.560 4.560 18 H 0.047 0.953 19 C 0.029 3.971 20 N -0.913 5.913 21 Si 0.967 3.033 22 H -0.273 1.273 23 H -0.269 1.269 24 H -0.274 1.274 25 C 0.152 3.848 26 C -0.096 4.096 27 H 0.096 0.904 28 H 0.077 0.923 29 H 0.065 0.935 30 H 0.058 0.942 31 H 0.075 0.925 32 H 0.168 0.832 33 H 0.141 0.859 34 H 0.094 0.906 35 H 0.065 0.935 36 H 0.085 0.915 37 H 0.040 0.960 38 H 0.075 0.925 39 H 0.203 0.797 40 H 0.057 0.943 41 H 0.037 0.963 42 H 0.275 0.725 43 H 0.101 0.899 44 H 0.097 0.903 45 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.468 -2.756 21.844 22.948 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.021 4.021 3 O -0.271 6.271 4 C 0.280 3.720 5 O -0.416 6.416 6 C -0.027 4.027 7 N -0.324 5.324 8 C -0.009 4.009 9 C -0.217 4.217 10 C 0.401 3.599 11 O -0.447 6.447 12 C -0.348 4.348 13 C -0.127 4.127 14 N -0.142 5.142 15 N -0.108 5.108 16 C 0.149 3.851 17 C -0.598 4.598 18 H 0.066 0.934 19 C -0.173 4.173 20 N -0.550 5.550 21 Si 0.791 3.209 22 H -0.198 1.198 23 H -0.193 1.193 24 H -0.198 1.198 25 C 0.016 3.984 26 C -0.154 4.154 27 H 0.115 0.885 28 H 0.096 0.904 29 H 0.084 0.916 30 H 0.077 0.923 31 H 0.093 0.907 32 H 0.186 0.814 33 H 0.158 0.842 34 H 0.112 0.888 35 H 0.083 0.917 36 H 0.104 0.896 37 H 0.059 0.941 38 H 0.094 0.906 39 H 0.219 0.781 40 H 0.074 0.926 41 H 0.055 0.945 42 H 0.084 0.916 43 H 0.119 0.881 44 H 0.116 0.884 45 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -6.552 -2.850 20.616 21.819 hybrid contribution 0.738 -1.068 -0.515 1.397 sum -5.815 -3.918 20.100 21.288 Atomic orbital electron populations 1.21829 0.90302 1.04292 1.03942 1.23288 0.97145 0.79229 1.02399 1.86518 1.23351 1.33694 1.83498 1.24843 0.81140 0.93844 0.72164 1.90709 1.61197 1.44008 1.45670 1.21863 0.80185 0.90070 1.10602 1.47414 1.05452 1.72572 1.06932 1.21580 0.97359 0.98843 0.83123 1.22094 1.02676 0.95825 1.01086 1.17237 0.85749 0.74523 0.82416 1.90676 1.15610 1.51940 1.86488 1.19899 0.95917 1.20961 0.98000 1.24395 0.94851 0.99491 0.93934 1.77111 1.08450 1.17569 1.11049 1.49163 1.06087 1.41958 1.13611 1.19441 0.98518 0.93579 0.73577 1.21386 1.49198 0.95449 0.93736 0.93424 1.25646 0.94282 0.97949 0.99439 1.69975 1.48123 1.19069 1.17865 0.85410 0.78568 0.78674 0.78205 1.19813 1.19329 1.19834 1.21917 0.93271 0.95256 0.87947 1.20657 0.87818 1.02898 1.03979 0.88501 0.90443 0.91625 0.92349 0.90713 0.81424 0.84204 0.88763 0.91654 0.89601 0.94103 0.90567 0.78107 0.92555 0.94539 0.91559 0.88073 0.88437 0.90728 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.70 10.29 71.98 0.74 -0.95 16 2 C 0.05 0.92 6.19 71.98 0.45 1.37 16 3 O -0.35 -7.08 10.22 -51.37 -0.52 -7.60 16 4 C 0.44 10.13 6.33 71.24 0.45 10.58 16 5 O -0.53 -16.15 16.13 21.96 0.35 -15.79 16 6 C 0.10 1.87 5.52 85.63 0.47 2.34 16 7 N -0.59 -15.09 1.98 -830.04 -1.64 -16.73 16 8 C 0.11 2.32 6.13 86.38 0.53 2.85 16 9 C -0.16 -2.50 10.24 71.98 0.74 -1.76 16 10 C 0.61 21.10 7.56 86.67 0.66 21.76 16 11 O -0.57 -22.63 14.72 -4.04 -0.06 -22.69 16 12 C -0.33 -12.51 5.72 -20.15 -0.12 -12.62 16 13 C 0.06 2.14 9.61 85.65 0.82 2.96 16 14 N -0.32 -14.10 12.50 -56.27 -0.70 -14.80 16 15 N -0.33 -15.26 3.56 -336.70 -1.20 -16.46 16 16 C 0.27 13.60 5.78 85.63 0.50 14.09 16 17 C -0.56 -30.96 9.39 25.60 0.24 -30.72 16 18 H 0.05 2.75 7.81 -2.91 -0.02 2.73 16 19 C 0.03 1.55 5.46 84.66 0.46 2.01 16 20 N -0.91 -50.47 13.29 21.45 0.28 -50.19 16 21 Si 0.97 42.99 29.54 68.60 2.03 45.02 16 22 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 23 H -0.27 -11.29 7.11 99.48 0.71 -10.59 16 24 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 25 C 0.15 6.28 7.00 42.14 0.29 6.57 16 26 C -0.10 -3.45 9.62 71.24 0.69 -2.76 16 27 H 0.10 0.79 8.14 -2.39 -0.02 0.77 16 28 H 0.08 0.74 8.14 -2.38 -0.02 0.72 16 29 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 30 H 0.06 1.18 8.13 -2.39 -0.02 1.16 16 31 H 0.07 1.21 8.13 -2.39 -0.02 1.19 16 32 H 0.17 1.59 8.12 -2.38 -0.02 1.57 16 33 H 0.14 2.89 4.14 -2.39 -0.01 2.88 16 34 H 0.09 1.53 8.07 -2.39 -0.02 1.51 16 35 H 0.06 1.68 7.35 -2.39 -0.02 1.66 16 36 H 0.09 1.02 8.14 -2.38 -0.02 1.00 16 37 H 0.04 0.83 8.14 -2.38 -0.02 0.81 16 38 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 39 H 0.20 5.86 4.40 -2.91 -0.01 5.85 16 40 H 0.06 2.83 7.62 -2.39 -0.02 2.81 16 41 H 0.04 1.98 8.14 -2.39 -0.02 1.96 16 42 H 0.28 14.21 8.31 -92.70 -0.77 13.44 16 43 H 0.10 3.08 8.14 -2.39 -0.02 3.06 16 44 H 0.10 3.52 6.41 -2.38 -0.02 3.51 16 45 H 0.07 2.86 7.70 -2.39 -0.02 2.84 16 Total: -1.00 -72.07 379.43 6.46 -65.61 By element: Atomic # 1 Polarization: 16.91 SS G_CDS: 1.00 Total: 17.91 kcal Atomic # 6 Polarization: 8.80 SS G_CDS: 6.92 Total: 15.72 kcal Atomic # 7 Polarization: -94.91 SS G_CDS: -3.26 Total: -98.17 kcal Atomic # 8 Polarization: -45.86 SS G_CDS: -0.23 Total: -46.09 kcal Atomic # 14 Polarization: 42.99 SS G_CDS: 2.03 Total: 45.02 kcal Total: -72.07 6.46 -65.61 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000888344804.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.825 kcal (2) G-P(sol) polarization free energy of solvation -72.067 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.242 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.458 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.609 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.785 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds