Wall clock time and date at job start Tue Mar 31 2020 13:43:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52992 * 109.47300 * 2 1 4 4 N 1.46500 * 109.47345 * 179.97438 * 3 2 1 5 5 C 1.46500 * 120.00167 * 270.01522 * 4 3 2 6 6 C 1.50697 * 109.46986 * 276.27329 * 5 4 3 7 7 O 1.20826 * 120.00372 * 359.97438 * 6 5 4 8 8 O 1.34235 * 119.99905 * 180.02562 * 6 5 4 9 9 C 1.45196 * 116.99904 * 179.97438 * 8 6 5 10 10 C 1.34775 * 119.99811 * 90.01036 * 4 3 2 11 11 O 1.21603 * 120.00099 * 5.89047 * 10 4 3 12 12 C 1.47425 * 119.99823 * 185.89048 * 10 4 3 13 13 C 1.41291 * 126.41618 * 333.02535 * 12 10 4 14 14 N 1.30458 * 108.02198 * 179.72395 * 13 12 10 15 15 N 1.39933 * 108.89588 * 0.40212 * 14 13 12 16 16 C 1.46500 * 125.75230 * 179.84968 * 15 14 13 17 17 C 1.50697 * 109.47170 * 269.69495 * 16 15 14 18 18 H 1.08002 * 120.00278 * 0.02562 * 17 16 15 19 19 C 1.37874 * 120.00119 * 179.72521 * 17 16 15 20 20 N 1.31515 * 120.00184 * 0.27208 * 19 17 16 21 21 Si 1.86805 * 120.00182 * 180.27850 * 19 17 16 22 22 H 1.48493 * 109.47393 * 59.99746 * 21 19 17 23 23 H 1.48500 * 109.46818 * 180.02562 * 21 19 17 24 24 H 1.48502 * 109.46790 * 299.99376 * 21 19 17 25 25 C 1.34263 * 108.49296 * 359.59235 * 15 14 13 26 26 C 1.50698 * 126.29133 * 180.21910 * 25 15 14 27 27 H 1.08995 * 109.46827 * 59.99787 * 1 2 3 28 28 H 1.08993 * 109.47220 * 179.97438 * 1 2 3 29 29 H 1.08993 * 109.46771 * 299.99910 * 1 2 3 30 30 H 1.09007 * 109.46539 * 240.00168 * 2 1 3 31 31 H 1.08997 * 109.47145 * 120.00653 * 2 1 3 32 32 H 1.09002 * 109.47191 * 60.00066 * 3 2 1 33 33 H 1.08997 * 109.47554 * 300.00402 * 3 2 1 34 34 H 1.09006 * 109.47150 * 36.26770 * 5 4 3 35 35 H 1.08997 * 109.47087 * 156.26832 * 5 4 3 36 36 H 1.09001 * 109.47343 * 60.00080 * 9 8 6 37 37 H 1.08998 * 109.47515 * 179.97438 * 9 8 6 38 38 H 1.09004 * 109.47181 * 300.00069 * 9 8 6 39 39 H 1.07996 * 125.98947 * 359.95411 * 13 12 10 40 40 H 1.08998 * 109.46902 * 149.69668 * 16 15 14 41 41 H 1.09002 * 109.46937 * 29.69540 * 16 15 14 42 42 H 0.96997 * 120.00194 * 179.97438 * 20 19 17 43 43 H 1.09004 * 109.47195 * 90.01611 * 26 25 15 44 44 H 1.08993 * 109.47514 * 210.02010 * 26 25 15 45 45 H 1.08999 * 109.47044 * 330.02880 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 3.5051 1.4424 0.0006 5 6 4.2371 1.4423 1.2696 6 6 4.3536 2.8545 1.7825 7 8 3.8748 3.7675 1.1524 8 8 4.9902 3.0983 2.9388 9 6 5.0646 4.4823 3.3713 10 6 4.1794 1.4425 -1.1663 11 8 3.5767 1.5506 -2.2169 12 6 5.6478 1.3114 -1.1691 13 6 6.5264 1.6979 -0.1322 14 7 7.7433 1.4155 -0.5080 15 7 7.7030 0.8519 -1.7882 16 6 8.8625 0.4019 -2.5623 17 6 9.3749 1.5398 -3.4070 18 1 8.8860 2.5022 -3.3706 19 6 10.4716 1.3542 -4.2217 20 7 11.0673 0.1826 -4.2657 21 14 11.1115 2.7670 -5.2629 22 1 11.5072 3.8933 -4.3798 23 1 12.2897 2.3121 -6.0440 24 1 10.0457 3.2183 -6.1934 25 6 6.4219 0.7878 -2.1851 26 6 5.9212 0.2445 -3.4985 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3632 0.5138 0.8900 30 1 1.8933 -0.5139 -0.8901 31 1 1.8934 -0.5139 0.8899 32 1 1.6768 1.9563 0.8900 33 1 1.6768 1.9563 -0.8899 34 1 3.7009 0.8342 1.9983 35 1 5.2335 1.0287 1.1143 36 1 4.0569 4.8765 3.5031 37 1 5.6030 4.5390 4.3173 38 1 5.5893 5.0706 2.6184 39 1 6.2403 2.1449 0.8084 40 1 8.5694 -0.4262 -3.2075 41 1 9.6477 0.0722 -1.8819 42 1 11.8386 0.0519 -4.8391 43 1 5.7173 -0.8214 -3.3968 44 1 5.0058 0.7641 -3.7814 45 1 6.6785 0.3976 -4.2674 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000890153288.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:43:47 Heat of formation + Delta-G solvation = -39.951632 kcal Electronic energy + Delta-G solvation = -28168.799901 eV Core-core repulsion = 24188.839874 eV Total energy + Delta-G solvation = -3979.960026 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.27049 -40.44235 -39.08899 -36.73090 -35.79847 -34.15892 -33.43311 -32.09511 -31.16219 -29.47844 -27.97565 -27.06390 -26.80763 -25.64060 -23.52150 -22.19572 -21.73810 -21.11219 -19.86037 -18.56607 -17.89946 -17.17483 -16.79965 -16.78746 -16.42391 -15.97582 -15.47173 -14.83981 -14.69437 -14.68488 -14.29685 -13.98561 -13.61357 -13.52076 -13.20131 -13.17889 -12.60026 -12.52967 -12.28413 -12.23429 -12.14263 -12.12161 -11.93962 -11.61019 -11.52848 -11.47970 -11.10772 -10.96379 -10.88690 -10.79764 -10.76153 -10.37365 -10.26487 -9.97231 -9.47885 -8.82350 -8.71818 -8.62519 -7.98177 -6.34896 -4.42976 1.99221 2.05122 2.40014 2.72297 3.00092 3.20558 3.24135 3.25989 3.35514 3.71005 4.23933 4.55993 4.68133 4.76609 4.89833 4.93904 4.95746 5.01767 5.03183 5.10149 5.13749 5.15351 5.30983 5.36204 5.45912 5.57872 5.68525 5.68742 5.80191 5.87798 6.00206 6.03092 6.11936 6.17870 6.40595 6.47944 6.55172 6.72442 6.86034 7.06719 7.37242 7.53943 7.59968 7.73847 7.75711 8.28824 8.44709 8.62708 9.24336 10.73185 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.013910 B = 0.003558 C = 0.003066 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2012.527716 B = 7867.214424 C = 9130.890648 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.140 4.140 3 C 0.120 3.880 4 N -0.599 5.599 5 C 0.100 3.900 6 C 0.433 3.567 7 O -0.489 6.489 8 O -0.360 6.360 9 C 0.035 3.965 10 C 0.612 3.388 11 O -0.537 6.537 12 C -0.332 4.332 13 C 0.039 3.961 14 N -0.287 5.287 15 N -0.310 5.310 16 C 0.251 3.749 17 C -0.543 4.543 18 H 0.065 0.935 19 C 0.069 3.931 20 N -0.889 5.889 21 Si 0.908 3.092 22 H -0.274 1.274 23 H -0.283 1.283 24 H -0.273 1.273 25 C 0.166 3.834 26 C -0.103 4.103 27 H 0.057 0.943 28 H 0.056 0.944 29 H 0.053 0.947 30 H 0.069 0.931 31 H 0.062 0.938 32 H 0.071 0.929 33 H 0.088 0.912 34 H 0.118 0.882 35 H 0.146 0.854 36 H 0.061 0.939 37 H 0.102 0.898 38 H 0.065 0.935 39 H 0.174 0.826 40 H 0.058 0.942 41 H 0.058 0.942 42 H 0.270 0.730 43 H 0.076 0.924 44 H 0.097 0.903 45 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.188 -0.436 13.583 21.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.179 4.179 3 C -0.002 4.002 4 N -0.332 5.332 5 C -0.026 4.026 6 C 0.273 3.727 7 O -0.374 6.374 8 O -0.276 6.276 9 C -0.059 4.059 10 C 0.404 3.596 11 O -0.414 6.414 12 C -0.347 4.347 13 C -0.147 4.147 14 N -0.107 5.107 15 N -0.087 5.087 16 C 0.134 3.866 17 C -0.581 4.581 18 H 0.083 0.917 19 C -0.135 4.135 20 N -0.527 5.527 21 Si 0.735 3.265 22 H -0.199 1.199 23 H -0.209 1.209 24 H -0.198 1.198 25 C 0.029 3.971 26 C -0.161 4.161 27 H 0.076 0.924 28 H 0.075 0.925 29 H 0.072 0.928 30 H 0.088 0.912 31 H 0.081 0.919 32 H 0.089 0.911 33 H 0.107 0.893 34 H 0.136 0.864 35 H 0.163 0.837 36 H 0.080 0.920 37 H 0.120 0.880 38 H 0.084 0.916 39 H 0.190 0.810 40 H 0.075 0.925 41 H 0.076 0.924 42 H 0.080 0.920 43 H 0.094 0.906 44 H 0.116 0.884 45 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -15.073 -0.187 12.988 19.897 hybrid contribution -0.288 1.127 -0.465 1.253 sum -15.360 0.941 12.523 19.840 Atomic orbital electron populations 1.21680 0.95194 1.01821 1.01909 1.21914 0.96053 0.97185 1.02734 1.21482 0.78484 0.96740 1.03515 1.47370 1.06351 1.75092 1.04401 1.21606 1.03202 0.90069 0.87706 1.24667 0.75389 0.93674 0.79014 1.90711 1.43773 1.46409 1.56526 1.86514 1.70376 1.31752 1.38965 1.23281 1.02592 0.79265 1.00721 1.17354 0.85870 0.73896 0.82446 1.90695 1.70038 1.49986 1.30685 1.19638 0.93051 1.23212 0.98841 1.23947 0.90558 1.01406 0.98769 1.77165 1.20708 1.16866 0.95985 1.49414 1.06569 1.41399 1.11318 1.19880 0.80368 0.96310 0.90031 1.21225 1.14561 0.97394 1.24915 0.91656 1.24911 0.95673 0.96425 0.96525 1.69899 1.21480 1.22471 1.38827 0.86378 0.78415 0.81743 0.80004 1.19888 1.20852 1.19787 1.21409 0.84770 0.95333 0.95572 1.20659 1.03226 1.00826 0.91397 0.92413 0.92501 0.92802 0.91199 0.91905 0.91092 0.89315 0.86380 0.83728 0.92026 0.87961 0.91648 0.80968 0.92455 0.92379 0.92028 0.90560 0.88417 0.89461 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.15 9.91 37.16 0.37 -0.78 16 2 C -0.14 -1.32 6.26 -26.73 -0.17 -1.49 16 3 C 0.12 1.37 5.41 -4.05 -0.02 1.35 16 4 N -0.60 -8.11 1.98 -176.34 -0.35 -8.46 16 5 C 0.10 1.09 5.53 -5.20 -0.03 1.06 16 6 C 0.43 5.38 6.34 36.00 0.23 5.60 16 7 O -0.49 -7.69 16.13 -18.75 -0.30 -8.00 16 8 O -0.36 -3.87 10.57 -39.27 -0.41 -4.29 16 9 C 0.04 0.30 10.56 101.05 1.07 1.37 16 10 C 0.61 10.69 7.56 -12.52 -0.09 10.60 16 11 O -0.54 -10.60 14.72 5.27 0.08 -10.52 16 12 C -0.33 -6.24 5.72 -105.07 -0.60 -6.84 16 13 C 0.04 0.71 9.61 -16.98 -0.16 0.55 16 14 N -0.29 -6.19 12.50 30.86 0.39 -5.81 16 15 N -0.31 -6.95 3.56 -57.77 -0.21 -7.16 16 16 C 0.25 6.17 5.78 -5.19 -0.03 6.14 16 17 C -0.54 -14.62 9.39 -34.44 -0.32 -14.94 16 18 H 0.07 1.83 7.81 -52.49 -0.41 1.42 16 19 C 0.07 1.84 5.46 -17.82 -0.10 1.74 16 20 N -0.89 -24.42 13.29 55.43 0.74 -23.68 16 21 Si 0.91 20.91 29.54 -169.99 -5.02 15.89 16 22 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 23 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 24 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 25 C 0.17 3.37 7.00 -81.60 -0.57 2.80 16 26 C -0.10 -1.83 9.62 36.00 0.35 -1.48 16 27 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 28 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 29 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 31 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.07 0.70 8.07 -51.93 -0.42 0.28 16 33 H 0.09 1.18 7.35 -51.93 -0.38 0.80 16 34 H 0.12 0.83 8.12 -51.93 -0.42 0.41 16 35 H 0.15 1.65 4.13 -51.93 -0.21 1.43 16 36 H 0.06 0.49 8.13 -51.93 -0.42 0.07 16 37 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.06 0.62 8.13 -51.93 -0.42 0.20 16 39 H 0.17 2.61 4.40 -52.49 -0.23 2.38 16 40 H 0.06 1.39 7.62 -51.93 -0.40 0.99 16 41 H 0.06 1.51 8.14 -51.93 -0.42 1.09 16 42 H 0.27 7.01 8.31 -40.82 -0.34 6.68 16 43 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 44 H 0.10 1.73 6.41 -51.93 -0.33 1.40 16 45 H 0.09 1.62 7.70 -51.93 -0.40 1.22 16 LS Contribution 379.06 15.07 5.71 5.71 Total: -1.00 -32.63 379.06 -6.04 -38.67 By element: Atomic # 1 Polarization: 8.54 SS G_CDS: -6.57 Total: 1.97 kcal Atomic # 6 Polarization: 5.77 SS G_CDS: -0.09 Total: 5.68 kcal Atomic # 7 Polarization: -45.67 SS G_CDS: 0.57 Total: -45.11 kcal Atomic # 8 Polarization: -22.16 SS G_CDS: -0.64 Total: -22.80 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.89 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -32.63 -6.04 -38.67 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000890153288.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.286 kcal (2) G-P(sol) polarization free energy of solvation -32.629 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.914 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.666 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.952 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds