Wall clock time and date at job start Tue Mar 31 2020 13:43:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52992 * 109.47300 * 2 1 4 4 N 1.46500 * 109.47345 * 179.97438 * 3 2 1 5 5 C 1.46500 * 120.00167 * 270.01522 * 4 3 2 6 6 C 1.50697 * 109.46986 * 276.27329 * 5 4 3 7 7 O 1.20826 * 120.00372 * 359.97438 * 6 5 4 8 8 O 1.34235 * 119.99905 * 180.02562 * 6 5 4 9 9 C 1.45196 * 116.99904 * 179.97438 * 8 6 5 10 10 C 1.34775 * 119.99811 * 90.01036 * 4 3 2 11 11 O 1.21603 * 120.00099 * 5.89047 * 10 4 3 12 12 C 1.47425 * 119.99823 * 185.89048 * 10 4 3 13 13 C 1.41291 * 126.41618 * 333.02535 * 12 10 4 14 14 N 1.30458 * 108.02198 * 179.72395 * 13 12 10 15 15 N 1.39933 * 108.89588 * 0.40212 * 14 13 12 16 16 C 1.46500 * 125.75230 * 179.84968 * 15 14 13 17 17 C 1.50697 * 109.47170 * 269.69495 * 16 15 14 18 18 H 1.08002 * 120.00278 * 0.02562 * 17 16 15 19 19 C 1.37874 * 120.00119 * 179.72521 * 17 16 15 20 20 N 1.31515 * 120.00184 * 0.27208 * 19 17 16 21 21 Si 1.86805 * 120.00182 * 180.27850 * 19 17 16 22 22 H 1.48493 * 109.47393 * 59.99746 * 21 19 17 23 23 H 1.48500 * 109.46818 * 180.02562 * 21 19 17 24 24 H 1.48502 * 109.46790 * 299.99376 * 21 19 17 25 25 C 1.34263 * 108.49296 * 359.59235 * 15 14 13 26 26 C 1.50698 * 126.29133 * 180.21910 * 25 15 14 27 27 H 1.08995 * 109.46827 * 59.99787 * 1 2 3 28 28 H 1.08993 * 109.47220 * 179.97438 * 1 2 3 29 29 H 1.08993 * 109.46771 * 299.99910 * 1 2 3 30 30 H 1.09007 * 109.46539 * 240.00168 * 2 1 3 31 31 H 1.08997 * 109.47145 * 120.00653 * 2 1 3 32 32 H 1.09002 * 109.47191 * 60.00066 * 3 2 1 33 33 H 1.08997 * 109.47554 * 300.00402 * 3 2 1 34 34 H 1.09006 * 109.47150 * 36.26770 * 5 4 3 35 35 H 1.08997 * 109.47087 * 156.26832 * 5 4 3 36 36 H 1.09001 * 109.47343 * 60.00080 * 9 8 6 37 37 H 1.08998 * 109.47515 * 179.97438 * 9 8 6 38 38 H 1.09004 * 109.47181 * 300.00069 * 9 8 6 39 39 H 1.07996 * 125.98947 * 359.95411 * 13 12 10 40 40 H 1.08998 * 109.46902 * 149.69668 * 16 15 14 41 41 H 1.09002 * 109.46937 * 29.69540 * 16 15 14 42 42 H 0.96997 * 120.00194 * 179.97438 * 20 19 17 43 43 H 1.09004 * 109.47195 * 90.01611 * 26 25 15 44 44 H 1.08993 * 109.47514 * 210.02010 * 26 25 15 45 45 H 1.08999 * 109.47044 * 330.02880 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 3.5051 1.4424 0.0006 5 6 4.2371 1.4423 1.2696 6 6 4.3536 2.8545 1.7825 7 8 3.8748 3.7675 1.1524 8 8 4.9902 3.0983 2.9388 9 6 5.0646 4.4823 3.3713 10 6 4.1794 1.4425 -1.1663 11 8 3.5767 1.5506 -2.2169 12 6 5.6478 1.3114 -1.1691 13 6 6.5264 1.6979 -0.1322 14 7 7.7433 1.4155 -0.5080 15 7 7.7030 0.8519 -1.7882 16 6 8.8625 0.4019 -2.5623 17 6 9.3749 1.5398 -3.4070 18 1 8.8860 2.5022 -3.3706 19 6 10.4716 1.3542 -4.2217 20 7 11.0673 0.1826 -4.2657 21 14 11.1115 2.7670 -5.2629 22 1 11.5072 3.8933 -4.3798 23 1 12.2897 2.3121 -6.0440 24 1 10.0457 3.2183 -6.1934 25 6 6.4219 0.7878 -2.1851 26 6 5.9212 0.2445 -3.4985 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3632 0.5138 0.8900 30 1 1.8933 -0.5139 -0.8901 31 1 1.8934 -0.5139 0.8899 32 1 1.6768 1.9563 0.8900 33 1 1.6768 1.9563 -0.8899 34 1 3.7009 0.8342 1.9983 35 1 5.2335 1.0287 1.1143 36 1 4.0569 4.8765 3.5031 37 1 5.6030 4.5390 4.3173 38 1 5.5893 5.0706 2.6184 39 1 6.2403 2.1449 0.8084 40 1 8.5694 -0.4262 -3.2075 41 1 9.6477 0.0722 -1.8819 42 1 11.8386 0.0519 -4.8391 43 1 5.7173 -0.8214 -3.3968 44 1 5.0058 0.7641 -3.7814 45 1 6.6785 0.3976 -4.2674 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000890153288.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:43:46 Heat of formation + Delta-G solvation = -59.355552 kcal Electronic energy + Delta-G solvation = -28169.641318 eV Core-core repulsion = 24188.839874 eV Total energy + Delta-G solvation = -3980.801443 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.67178 -41.58541 -40.34117 -37.75806 -36.90238 -35.90484 -34.60075 -33.73138 -32.74932 -30.41944 -29.51356 -28.43008 -27.91162 -26.76423 -25.35718 -23.38004 -22.62817 -22.38858 -21.23603 -19.94378 -18.89412 -18.83286 -18.44480 -17.82266 -17.47067 -17.08113 -16.99832 -16.38840 -16.20275 -15.75303 -15.52735 -15.26650 -14.88178 -14.50333 -14.40330 -14.31285 -14.14663 -13.97541 -13.72524 -13.64467 -13.25319 -13.05255 -13.01591 -12.94403 -12.89128 -12.73922 -12.57830 -12.32259 -12.25904 -11.89394 -11.85146 -11.81371 -11.76720 -11.55633 -10.90845 -10.77099 -10.32654 -9.93896 -9.53948 -8.39426 -6.55474 0.59040 0.97068 1.17184 1.36961 1.37498 1.45033 1.47929 1.61655 1.98968 2.31313 2.37148 2.92906 3.43949 3.61353 3.73497 3.82958 3.92928 4.08290 4.12937 4.14550 4.27342 4.32337 4.34504 4.35752 4.42871 4.60200 4.62461 4.73682 4.76678 4.78237 4.87142 4.98277 5.01268 5.09304 5.21581 5.27431 5.29778 5.34866 5.45097 5.49178 5.57494 5.73330 5.98800 6.16258 6.52376 6.64220 6.70630 7.12079 7.15692 8.68182 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.013910 B = 0.003558 C = 0.003066 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2012.527716 B = 7867.214424 C = 9130.890648 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.133 4.133 3 C 0.119 3.881 4 N -0.592 5.592 5 C 0.097 3.903 6 C 0.436 3.564 7 O -0.527 6.527 8 O -0.356 6.356 9 C 0.028 3.972 10 C 0.610 3.390 11 O -0.567 6.567 12 C -0.332 4.332 13 C 0.059 3.941 14 N -0.322 5.322 15 N -0.331 5.331 16 C 0.267 3.733 17 C -0.560 4.560 18 H 0.048 0.952 19 C 0.028 3.972 20 N -0.913 5.913 21 Si 0.967 3.033 22 H -0.275 1.275 23 H -0.270 1.270 24 H -0.269 1.269 25 C 0.152 3.848 26 C -0.096 4.096 27 H 0.048 0.952 28 H 0.066 0.934 29 H 0.068 0.932 30 H 0.047 0.953 31 H 0.083 0.917 32 H 0.093 0.907 33 H 0.064 0.936 34 H 0.168 0.832 35 H 0.142 0.858 36 H 0.067 0.933 37 H 0.134 0.866 38 H 0.052 0.948 39 H 0.204 0.796 40 H 0.056 0.944 41 H 0.037 0.963 42 H 0.275 0.725 43 H 0.101 0.899 44 H 0.097 0.903 45 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.377 -0.387 15.273 23.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.171 4.171 3 C -0.003 4.003 4 N -0.323 5.323 5 C -0.028 4.028 6 C 0.278 3.722 7 O -0.415 6.415 8 O -0.271 6.271 9 C -0.066 4.066 10 C 0.401 3.599 11 O -0.447 6.447 12 C -0.347 4.347 13 C -0.126 4.126 14 N -0.142 5.142 15 N -0.108 5.108 16 C 0.149 3.851 17 C -0.598 4.598 18 H 0.066 0.934 19 C -0.174 4.174 20 N -0.550 5.550 21 Si 0.791 3.209 22 H -0.200 1.200 23 H -0.195 1.195 24 H -0.194 1.194 25 C 0.016 3.984 26 C -0.154 4.154 27 H 0.067 0.933 28 H 0.085 0.915 29 H 0.087 0.913 30 H 0.066 0.934 31 H 0.102 0.898 32 H 0.112 0.888 33 H 0.083 0.917 34 H 0.186 0.814 35 H 0.159 0.841 36 H 0.085 0.915 37 H 0.152 0.848 38 H 0.071 0.929 39 H 0.220 0.780 40 H 0.074 0.926 41 H 0.055 0.945 42 H 0.084 0.916 43 H 0.119 0.881 44 H 0.116 0.884 45 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -16.278 -0.151 14.731 21.955 hybrid contribution -0.005 1.143 -0.843 1.421 sum -16.283 0.992 13.888 21.424 Atomic orbital electron populations 1.21666 0.93804 1.02593 1.02249 1.21853 0.97177 0.95470 1.02637 1.21653 0.76974 0.98223 1.03433 1.47369 1.07329 1.73383 1.04205 1.21869 1.03512 0.89987 0.87437 1.24872 0.74621 0.93677 0.79021 1.90713 1.45537 1.47578 1.57676 1.86514 1.69590 1.33032 1.37997 1.23555 1.03362 0.77965 1.01672 1.17237 0.85259 0.74070 0.83335 1.90679 1.70287 1.51585 1.32117 1.19889 0.94082 1.22327 0.98444 1.24410 0.89339 0.99559 0.99341 1.77115 1.22520 1.18449 0.96100 1.49163 1.06600 1.43167 1.11909 1.19433 0.80708 0.95589 0.89361 1.21361 1.15168 0.97352 1.25955 0.93378 1.25653 0.95629 0.98707 0.97366 1.69968 1.21827 1.23893 1.39362 0.85466 0.78201 0.78744 0.78486 1.20033 1.19494 1.19359 1.21910 0.84268 0.95417 0.96771 1.20655 1.02467 1.02294 0.89952 0.93322 0.91520 0.91260 0.93435 0.89805 0.88849 0.91720 0.81434 0.84125 0.91455 0.84768 0.92922 0.78000 0.92580 0.94544 0.91555 0.88106 0.88438 0.90747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.91 9.91 71.98 0.71 -1.20 16 2 C -0.13 -2.21 6.26 30.59 0.19 -2.02 16 3 C 0.12 2.49 5.41 86.38 0.47 2.96 16 4 N -0.59 -14.98 1.98 -830.06 -1.64 -16.62 16 5 C 0.10 1.81 5.53 85.63 0.47 2.29 16 6 C 0.44 9.81 6.34 71.23 0.45 10.27 16 7 O -0.53 -15.84 16.13 21.97 0.35 -15.49 16 8 O -0.36 -6.69 10.57 -51.46 -0.54 -7.23 16 9 C 0.03 0.41 10.56 113.37 1.20 1.61 16 10 C 0.61 20.98 7.56 86.66 0.66 21.64 16 11 O -0.57 -22.54 14.72 -4.04 -0.06 -22.60 16 12 C -0.33 -12.40 5.72 -20.15 -0.12 -12.52 16 13 C 0.06 2.12 9.61 85.65 0.82 2.95 16 14 N -0.32 -14.02 12.50 -56.27 -0.70 -14.73 16 15 N -0.33 -15.21 3.56 -336.70 -1.20 -16.41 16 16 C 0.27 13.59 5.78 85.63 0.50 14.09 16 17 C -0.56 -30.95 9.39 25.60 0.24 -30.71 16 18 H 0.05 2.77 7.81 -2.91 -0.02 2.74 16 19 C 0.03 1.53 5.46 84.65 0.46 1.99 16 20 N -0.91 -50.52 13.29 21.45 0.28 -50.23 16 21 Si 0.97 42.93 29.54 68.60 2.03 44.96 16 22 H -0.27 -12.20 7.11 99.48 0.71 -11.50 16 23 H -0.27 -11.37 7.11 99.48 0.71 -10.66 16 24 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 25 C 0.15 6.26 7.00 42.14 0.29 6.55 16 26 C -0.10 -3.45 9.62 71.24 0.69 -2.76 16 27 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 28 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 29 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 30 H 0.05 1.02 8.14 -2.38 -0.02 1.00 16 31 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 32 H 0.09 1.56 8.07 -2.39 -0.02 1.54 16 33 H 0.06 1.70 7.35 -2.39 -0.02 1.68 16 34 H 0.17 1.54 8.12 -2.38 -0.02 1.52 16 35 H 0.14 2.84 4.13 -2.39 -0.01 2.83 16 36 H 0.07 0.94 8.13 -2.39 -0.02 0.92 16 37 H 0.13 1.12 8.14 -2.39 -0.02 1.10 16 38 H 0.05 0.93 8.13 -2.38 -0.02 0.91 16 39 H 0.20 5.78 4.40 -2.91 -0.01 5.76 16 40 H 0.06 2.81 7.62 -2.39 -0.02 2.79 16 41 H 0.04 1.98 8.14 -2.39 -0.02 1.96 16 42 H 0.28 14.27 8.31 -92.71 -0.77 13.50 16 43 H 0.10 3.07 8.14 -2.39 -0.02 3.05 16 44 H 0.10 3.52 6.41 -2.39 -0.02 3.50 16 45 H 0.07 2.85 7.70 -2.39 -0.02 2.83 16 Total: -1.00 -72.10 379.06 6.56 -65.54 By element: Atomic # 1 Polarization: 16.68 SS G_CDS: 1.00 Total: 17.68 kcal Atomic # 6 Polarization: 8.10 SS G_CDS: 7.03 Total: 15.13 kcal Atomic # 7 Polarization: -94.73 SS G_CDS: -3.26 Total: -97.99 kcal Atomic # 8 Polarization: -45.07 SS G_CDS: -0.25 Total: -45.32 kcal Atomic # 14 Polarization: 42.93 SS G_CDS: 2.03 Total: 44.96 kcal Total: -72.10 6.56 -65.54 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000890153288.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.189 kcal (2) G-P(sol) polarization free energy of solvation -72.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.911 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.555 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.545 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.356 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds