Wall clock time and date at job start Tue Mar 31 2020 13:36:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34230 * 116.99836 * 2 1 4 4 O 1.20833 * 119.99930 * 359.97438 * 3 2 1 5 5 C 1.50697 * 120.00262 * 180.27336 * 3 2 1 6 6 C 1.52993 * 109.47599 * 154.71944 * 5 3 2 7 7 C 1.52997 * 109.47061 * 274.72172 * 5 3 2 8 8 N 1.46500 * 109.47210 * 299.99866 * 7 5 3 9 9 C 1.34945 * 126.04023 * 124.71128 * 8 7 5 10 10 C 1.35313 * 107.74522 * 179.83760 * 9 8 7 11 11 C 1.39872 * 107.92153 * 0.42886 * 10 9 8 12 12 N 1.30832 * 108.20032 * 359.73239 * 11 10 9 13 13 N 1.46504 * 109.47162 * 34.71620 * 5 3 2 14 14 C 1.34782 * 119.99589 * 60.00400 * 13 5 3 15 15 O 1.21284 * 120.00163 * 0.02562 * 14 13 5 16 16 C 1.50702 * 120.00005 * 180.02562 * 14 13 5 17 17 C 1.52997 * 109.47098 * 179.97438 * 16 14 13 18 18 C 1.53003 * 109.47191 * 179.97438 * 17 16 14 19 19 C 1.50691 * 109.47245 * 180.02562 * 18 17 16 20 20 H 1.08005 * 120.00351 * 0.02562 * 19 18 17 21 21 C 1.37884 * 119.99972 * 180.02562 * 19 18 17 22 22 N 1.31515 * 119.99742 * 0.02562 * 21 19 18 23 23 Si 1.86799 * 119.99995 * 179.97438 * 21 19 18 24 24 H 1.48505 * 109.46976 * 59.99835 * 23 21 19 25 25 H 1.48500 * 109.47195 * 179.97438 * 23 21 19 26 26 H 1.48495 * 109.47348 * 300.00354 * 23 21 19 27 27 H 1.09004 * 109.46770 * 60.01042 * 1 2 3 28 28 H 1.09001 * 109.46882 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47630 * 300.00638 * 1 2 3 30 30 H 1.09004 * 109.47177 * 59.99845 * 6 5 3 31 31 H 1.09003 * 109.47418 * 179.97438 * 6 5 3 32 32 H 1.09000 * 109.47190 * 300.00198 * 6 5 3 33 33 H 1.09004 * 109.47023 * 59.99437 * 7 5 3 34 34 H 1.09003 * 109.47189 * 179.97438 * 7 5 3 35 35 H 1.08004 * 126.12541 * 0.02562 * 9 8 7 36 36 H 1.08007 * 126.03887 * 180.15797 * 10 9 8 37 37 H 1.07997 * 125.89872 * 179.71198 * 11 10 9 38 38 H 0.96990 * 120.00634 * 240.00487 * 13 5 3 39 39 H 1.09003 * 109.46780 * 299.99718 * 16 14 13 40 40 H 1.08997 * 109.47246 * 59.99590 * 16 14 13 41 41 H 1.08994 * 109.47214 * 299.99878 * 17 16 14 42 42 H 1.09004 * 109.47023 * 60.00027 * 17 16 14 43 43 H 1.09003 * 109.46867 * 300.00610 * 18 17 16 44 44 H 1.09004 * 109.46681 * 60.00349 * 18 17 16 45 45 H 0.97000 * 119.99412 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4032 2.2094 -0.0005 5 6 3.5663 1.2750 -0.0062 6 6 4.0047 2.6055 -0.6212 7 6 4.0879 1.1800 1.4289 8 7 3.5441 2.2865 2.2204 9 6 2.8497 2.1728 3.3719 10 6 2.5315 3.4209 3.7866 11 6 3.0407 4.3280 2.8515 12 7 3.6479 3.6491 1.9123 13 7 4.1101 0.1685 -0.7976 14 6 3.7850 0.0481 -2.1000 15 8 3.0426 0.8559 -2.6170 16 6 4.3439 -1.0904 -2.9140 17 6 3.8219 -0.9958 -4.3491 18 6 4.3898 -2.1513 -5.1756 19 6 3.8762 -2.0577 -6.5892 20 1 3.2115 -1.2541 -6.8702 21 6 4.2549 -2.9979 -7.5240 22 7 5.0639 -3.9767 -7.1817 23 14 3.6176 -2.8823 -9.2761 24 1 4.0431 -1.5909 -9.8734 25 1 4.1689 -4.0037 -10.0784 26 1 2.1347 -2.9598 -9.2697 27 1 -0.3633 0.5137 -0.8901 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 3.6001 3.4288 -0.0324 31 1 5.0932 2.6628 -0.6253 32 1 3.6331 2.6732 -1.6437 33 1 3.7755 0.2321 1.8671 34 1 5.1764 1.2367 1.4244 35 1 2.5962 1.2509 3.8742 36 1 1.9781 3.6720 4.6794 37 1 2.9482 5.4030 2.8968 38 1 4.7040 -0.4774 -0.3843 39 1 5.4324 -1.0337 -2.9185 40 1 4.0312 -2.0382 -2.4758 41 1 2.7335 -1.0526 -4.3443 42 1 4.1343 -0.0480 -4.7875 43 1 5.4783 -2.0940 -5.1803 44 1 4.0777 -3.0992 -4.7373 45 1 5.3305 -4.6379 -7.8394 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000890943720.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:36:52 Heat of formation + Delta-G solvation = -39.998156 kcal Electronic energy + Delta-G solvation = -27941.595375 eV Core-core repulsion = 23961.633331 eV Total energy + Delta-G solvation = -3979.962044 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.75487 -40.78255 -39.40792 -36.93791 -36.14112 -34.21467 -33.29032 -32.10733 -30.97477 -29.90668 -28.11323 -27.70500 -27.09566 -24.34727 -23.64937 -21.86835 -21.36930 -20.75550 -20.02183 -19.81120 -18.22274 -17.56898 -17.13590 -16.78506 -16.39517 -16.02919 -15.57462 -15.37424 -15.19979 -14.55690 -14.42281 -14.15400 -13.79628 -13.61129 -13.41039 -13.39007 -13.07427 -12.87264 -12.35113 -12.28914 -12.25086 -12.23502 -11.83412 -11.79270 -11.38531 -10.87777 -10.79996 -10.74481 -10.65446 -10.61655 -10.54762 -9.82876 -9.70176 -9.60822 -9.32240 -9.29135 -9.04863 -8.90280 -8.32429 -5.98465 -3.99777 1.55542 1.88777 2.08254 2.45720 2.61325 2.85483 3.04744 3.36282 3.39632 3.43726 3.90580 4.05932 4.44198 4.48469 4.49344 4.66421 4.81211 4.90481 4.97644 5.08100 5.11130 5.27556 5.37653 5.41348 5.46307 5.62706 5.66720 5.68244 5.71777 5.80862 6.12827 6.18414 6.23648 6.28848 6.55766 6.63718 6.69721 6.89901 7.13706 7.35357 7.41047 7.63786 7.69342 7.82012 8.01982 8.27842 8.45985 9.06954 9.64140 11.12968 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.027228 B = 0.002458 C = 0.002404 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1028.090298 B =11386.494648 C =11646.300287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.354 6.354 3 C 0.464 3.536 4 O -0.486 6.486 5 C 0.183 3.817 6 C -0.166 4.166 7 C 0.135 3.865 8 N -0.375 5.375 9 C 0.053 3.947 10 C -0.268 4.268 11 C 0.047 3.953 12 N -0.276 5.276 13 N -0.728 5.728 14 C 0.520 3.480 15 O -0.524 6.524 16 C -0.134 4.134 17 C -0.095 4.095 18 C 0.021 3.979 19 C -0.519 4.519 20 H 0.055 0.945 21 C 0.056 3.944 22 N -0.898 5.898 23 Si 0.892 3.108 24 H -0.277 1.277 25 H -0.288 1.288 26 H -0.277 1.277 27 H 0.064 0.936 28 H 0.102 0.898 29 H 0.059 0.941 30 H 0.109 0.891 31 H 0.068 0.932 32 H 0.082 0.918 33 H 0.111 0.889 34 H 0.111 0.889 35 H 0.172 0.828 36 H 0.147 0.853 37 H 0.183 0.817 38 H 0.406 0.594 39 H 0.091 0.909 40 H 0.092 0.908 41 H 0.054 0.946 42 H 0.055 0.945 43 H 0.016 0.984 44 H 0.016 0.984 45 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.419 9.268 26.692 28.359 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.270 6.270 3 C 0.304 3.696 4 O -0.370 6.370 5 C 0.093 3.907 6 C -0.224 4.224 7 C 0.012 3.988 8 N -0.158 5.158 9 C -0.092 4.092 10 C -0.297 4.297 11 C -0.139 4.139 12 N -0.097 5.097 13 N -0.385 5.385 14 C 0.309 3.691 15 O -0.398 6.398 16 C -0.174 4.174 17 C -0.133 4.133 18 C -0.016 4.016 19 C -0.557 4.557 20 H 0.073 0.927 21 C -0.145 4.145 22 N -0.537 5.537 23 Si 0.720 3.280 24 H -0.202 1.202 25 H -0.213 1.213 26 H -0.202 1.202 27 H 0.083 0.917 28 H 0.120 0.880 29 H 0.077 0.923 30 H 0.127 0.873 31 H 0.087 0.913 32 H 0.101 0.899 33 H 0.129 0.871 34 H 0.129 0.871 35 H 0.189 0.811 36 H 0.165 0.835 37 H 0.200 0.800 38 H 0.241 0.759 39 H 0.110 0.890 40 H 0.110 0.890 41 H 0.073 0.927 42 H 0.074 0.926 43 H 0.034 0.966 44 H 0.034 0.966 45 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -2.420 9.947 25.053 27.064 hybrid contribution -0.765 -0.490 0.030 0.909 sum -3.185 9.456 25.084 26.995 Atomic orbital electron populations 1.23252 0.76313 1.03693 1.02399 1.86493 1.23408 1.33186 1.83921 1.23716 0.91528 0.81785 0.72619 1.90667 1.66238 1.36338 1.43742 1.20365 0.86258 0.91841 0.92197 1.22470 1.01793 0.94197 1.03913 1.21826 1.00773 0.87735 0.88440 1.48337 1.43534 1.05305 1.18586 1.22552 0.96952 1.00501 0.89147 1.21501 1.12000 0.91519 1.04715 1.23967 0.97249 1.00524 0.92189 1.77285 1.24079 0.86014 1.22272 1.46108 1.52217 1.29267 1.10952 1.21393 0.80046 0.86992 0.80664 1.90699 1.35527 1.43103 1.70452 1.21851 1.02023 0.95565 0.97972 1.21461 1.00322 1.01277 0.90266 1.19119 0.96117 0.92297 0.94025 1.21227 1.28590 1.10874 0.95006 0.92666 1.25015 0.95200 0.95398 0.98861 1.69950 1.34765 1.14424 1.34588 0.86654 0.79225 0.77535 0.84586 1.20220 1.21319 1.20242 0.91722 0.88007 0.92270 0.87293 0.91268 0.89918 0.87099 0.87099 0.81051 0.83493 0.79970 0.75868 0.89024 0.88996 0.92720 0.92642 0.96572 0.96584 0.93007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.41 10.56 101.05 1.07 1.48 16 2 O -0.35 -4.74 10.16 -39.26 -0.40 -5.14 16 3 C 0.46 6.73 5.03 36.00 0.18 6.91 16 4 O -0.49 -8.41 15.84 -18.76 -0.30 -8.71 16 5 C 0.18 2.12 0.85 -132.98 -0.11 2.01 16 6 C -0.17 -2.25 7.52 37.15 0.28 -1.97 16 7 C 0.14 1.04 5.57 -4.04 -0.02 1.01 16 8 N -0.37 -3.60 3.25 -61.36 -0.20 -3.80 16 9 C 0.05 0.43 11.45 -17.23 -0.20 0.23 16 10 C -0.27 -2.20 10.80 -40.01 -0.43 -2.63 16 11 C 0.05 0.45 12.03 -17.37 -0.21 0.24 16 12 N -0.28 -3.18 9.33 30.62 0.29 -2.89 16 13 N -0.73 -7.91 4.87 -48.68 -0.24 -8.15 16 14 C 0.52 8.00 7.15 -10.98 -0.08 7.92 16 15 O -0.52 -10.30 13.19 5.55 0.07 -10.23 16 16 C -0.13 -2.10 5.70 -27.88 -0.16 -2.26 16 17 C -0.10 -2.02 4.44 -26.73 -0.12 -2.14 16 18 C 0.02 0.55 4.97 -27.89 -0.14 0.41 16 19 C -0.52 -14.96 9.11 -34.44 -0.31 -15.27 16 20 H 0.06 1.58 7.74 -52.48 -0.41 1.17 16 21 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 22 N -0.90 -26.92 13.29 55.43 0.74 -26.19 16 23 Si 0.89 22.03 29.54 -169.99 -5.02 17.01 16 24 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 25 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 26 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 27 H 0.06 0.81 8.13 -51.93 -0.42 0.39 16 28 H 0.10 0.84 8.14 -51.93 -0.42 0.41 16 29 H 0.06 0.58 8.13 -51.93 -0.42 0.16 16 30 H 0.11 1.58 4.91 -51.93 -0.25 1.32 16 31 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 32 H 0.08 1.40 6.17 -51.93 -0.32 1.08 16 33 H 0.11 0.53 8.07 -51.93 -0.42 0.11 16 34 H 0.11 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.17 0.78 8.06 -52.48 -0.42 0.36 16 36 H 0.15 0.86 8.06 -52.48 -0.42 0.44 16 37 H 0.18 1.22 8.06 -52.49 -0.42 0.79 16 38 H 0.41 2.76 8.47 -40.82 -0.35 2.42 16 39 H 0.09 1.26 8.14 -51.93 -0.42 0.84 16 40 H 0.09 1.29 8.14 -51.93 -0.42 0.87 16 41 H 0.05 1.22 8.10 -51.93 -0.42 0.80 16 42 H 0.05 1.23 8.10 -51.93 -0.42 0.81 16 43 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 44 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 45 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 LS Contribution 378.72 15.07 5.71 5.71 Total: -1.00 -38.09 378.72 -6.50 -44.59 By element: Atomic # 1 Polarization: 7.13 SS G_CDS: -6.80 Total: 0.33 kcal Atomic # 6 Polarization: -2.18 SS G_CDS: -0.35 Total: -2.54 kcal Atomic # 7 Polarization: -41.61 SS G_CDS: 0.59 Total: -41.02 kcal Atomic # 8 Polarization: -23.46 SS G_CDS: -0.62 Total: -24.08 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.02 Total: 17.01 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -38.09 -6.50 -44.59 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000890943720.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.587 kcal (2) G-P(sol) polarization free energy of solvation -38.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.500 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.585 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.998 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds