Wall clock time and date at job start Tue Mar 31 2020 14:28:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52999 * 109.47217 * 2 1 4 4 C 1.50703 * 109.47202 * 120.00292 * 2 1 3 5 5 C 1.35345 * 126.38227 * 145.00223 * 4 2 1 6 6 C 1.41545 * 105.50387 * 179.73404 * 5 4 2 7 7 C 1.47578 * 126.52359 * 179.97438 * 6 5 4 8 8 O 1.21495 * 120.00123 * 359.97438 * 7 6 5 9 9 O 1.34735 * 120.00302 * 180.02562 * 7 6 5 10 10 C 1.45197 * 117.00013 * 180.02562 * 9 7 6 11 11 H 1.08991 * 109.47433 * 329.99404 * 10 9 7 12 12 C 1.53002 * 109.47223 * 89.99864 * 10 9 7 13 13 C 1.50708 * 109.46486 * 209.99494 * 10 9 7 14 14 O 1.21281 * 120.00034 * 0.02562 * 13 10 9 15 15 N 1.34776 * 119.99384 * 180.02562 * 13 10 9 16 16 C 1.46499 * 120.00415 * 359.97438 * 15 13 10 17 17 C 1.46507 * 119.99761 * 180.02562 * 15 13 10 18 18 C 1.50699 * 109.47116 * 89.99544 * 17 15 13 19 19 H 1.07997 * 120.00034 * 0.02562 * 18 17 15 20 20 C 1.37880 * 119.99728 * 180.02562 * 18 17 15 21 21 N 1.31512 * 119.99917 * 0.02562 * 20 18 17 22 22 Si 1.86795 * 119.99745 * 180.02562 * 20 18 17 23 23 H 1.48498 * 109.47317 * 359.97438 * 22 20 18 24 24 H 1.48505 * 109.47026 * 119.99973 * 22 20 18 25 25 H 1.48498 * 109.47124 * 239.99564 * 22 20 18 26 26 N 1.31862 * 106.95144 * 359.97438 * 6 5 4 27 27 N 1.28463 * 110.06052 * 359.97438 * 26 6 5 28 28 H 0.96999 * 124.87765 * 180.02562 * 27 26 6 29 29 H 1.09002 * 109.46758 * 299.99736 * 1 2 3 30 30 H 1.08996 * 109.47139 * 59.99680 * 1 2 3 31 31 H 1.08995 * 109.47074 * 180.02562 * 1 2 3 32 32 H 1.08994 * 109.46799 * 239.99909 * 2 1 3 33 33 H 1.09007 * 109.47096 * 59.99959 * 3 2 1 34 34 H 1.09002 * 109.46960 * 180.02562 * 3 2 1 35 35 H 1.08996 * 109.46804 * 300.00254 * 3 2 1 36 36 H 1.07997 * 127.24571 * 359.70812 * 5 4 2 37 37 H 1.08997 * 109.47223 * 59.99865 * 12 10 9 38 38 H 1.08997 * 109.47048 * 179.97438 * 12 10 9 39 39 H 1.08994 * 109.46947 * 299.99744 * 12 10 9 40 40 H 1.08997 * 109.46598 * 90.00196 * 16 15 13 41 41 H 1.09002 * 109.46999 * 210.00168 * 16 15 13 42 42 H 1.08997 * 109.46929 * 330.00477 * 16 15 13 43 43 H 1.08994 * 109.47289 * 210.00025 * 17 15 13 44 44 H 1.09003 * 109.46384 * 329.99781 * 17 15 13 45 45 H 0.97001 * 119.99749 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0324 -0.7105 1.2304 5 6 3.1416 -1.4814 1.3157 6 6 3.1963 -1.9181 2.6610 7 6 4.2258 -2.7890 3.2606 8 8 5.1424 -3.2038 2.5794 9 8 4.1488 -3.1251 4.5631 10 6 5.1963 -3.9843 5.0852 11 1 5.5644 -4.6327 4.2902 12 6 6.3453 -3.1238 5.6147 13 6 4.6427 -4.8273 6.2051 14 8 3.4798 -4.7153 6.5306 15 7 5.4401 -5.7057 6.8447 16 6 6.8446 -5.8414 6.4511 17 6 4.9018 -6.5257 7.9330 18 6 4.3587 -7.8138 7.3702 19 1 4.4097 -8.0030 6.3081 20 6 3.7966 -8.7508 8.2112 21 7 3.7341 -8.5201 9.5044 22 14 3.1240 -10.3477 7.5136 23 1 3.3132 -10.3631 6.0408 24 1 3.8472 -11.4953 8.1180 25 1 1.6765 -10.4541 7.8274 26 7 2.1523 -1.3987 3.2766 27 7 1.4637 -0.6905 2.4552 28 1 0.6516 -0.2109 2.6819 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0276 0.0005 32 1 1.8933 -0.5138 -0.8899 33 1 1.6767 1.9563 0.8900 34 1 3.1301 1.4424 -0.0005 35 1 1.6767 1.9563 -0.8899 36 1 3.8380 -1.7146 0.5239 37 1 5.9771 -2.4754 6.4098 38 1 7.1314 -3.7688 6.0070 39 1 6.7456 -2.5140 4.8047 40 1 7.4529 -5.1465 7.0300 41 1 7.1782 -6.8616 6.6411 42 1 6.9477 -5.6172 5.3894 43 1 5.6946 -6.7470 8.6475 44 1 4.1013 -5.9825 8.4353 45 1 3.3390 -9.1795 10.0961 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000919215229.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:28:13 Heat of formation + Delta-G solvation = -71.034454 kcal Electronic energy + Delta-G solvation = -27111.519111 eV Core-core repulsion = 23130.211232 eV Total energy + Delta-G solvation = -3981.307879 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -43.91523 -41.81007 -40.47033 -37.67662 -36.74443 -36.67367 -34.94289 -33.41247 -32.74844 -30.90098 -29.57684 -28.05360 -27.76240 -26.52505 -25.70444 -24.16073 -23.47111 -22.10661 -21.27414 -20.48031 -19.07890 -18.71329 -18.26493 -18.09922 -17.52881 -17.27576 -16.85921 -16.59786 -16.35986 -15.83425 -15.72587 -15.02685 -14.85064 -14.81037 -14.57747 -14.31800 -14.14420 -13.92667 -13.71364 -13.55556 -13.34630 -13.05797 -13.02088 -12.83360 -12.62648 -12.46631 -12.43411 -12.23391 -12.19778 -12.11836 -11.99813 -11.96359 -11.70425 -11.68966 -10.66780 -10.66228 -10.63474 -10.09224 -9.53094 -8.25226 -6.39633 0.10766 0.96935 1.10456 1.34700 1.37451 1.49009 1.59774 1.88546 1.94786 2.31124 2.42618 3.04610 3.22743 3.38254 3.47012 3.69041 3.81882 3.82850 4.08651 4.18572 4.28918 4.33446 4.51088 4.55084 4.60718 4.61686 4.68124 4.77491 4.86795 4.93581 4.96640 5.00460 5.09221 5.11920 5.15642 5.19374 5.21625 5.34708 5.39325 5.50271 5.76890 5.95535 6.02154 6.39338 6.58319 6.69076 6.77493 7.18872 7.34375 8.82394 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.018050 B = 0.002554 C = 0.002370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1550.836505 B =10961.541724 C =11810.950981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.022 4.022 3 C -0.146 4.146 4 C 0.044 3.956 5 C -0.181 4.181 6 C -0.027 4.027 7 C 0.552 3.448 8 O -0.512 6.512 9 O -0.334 6.334 10 C 0.077 3.923 11 H 0.119 0.881 12 C -0.166 4.166 13 C 0.499 3.501 14 O -0.580 6.580 15 N -0.598 5.598 16 C 0.066 3.934 17 C 0.260 3.740 18 C -0.545 4.545 19 H 0.051 0.949 20 C 0.008 3.992 21 N -0.926 5.926 22 Si 0.968 3.032 23 H -0.269 1.269 24 H -0.265 1.265 25 H -0.282 1.282 26 N -0.257 5.257 27 N -0.356 5.356 28 H 0.460 0.540 29 H 0.061 0.939 30 H 0.087 0.913 31 H 0.054 0.946 32 H 0.113 0.887 33 H 0.054 0.946 34 H 0.056 0.944 35 H 0.084 0.916 36 H 0.180 0.820 37 H 0.066 0.934 38 H 0.117 0.883 39 H 0.088 0.912 40 H 0.087 0.913 41 H 0.076 0.924 42 H 0.089 0.911 43 H 0.036 0.964 44 H -0.001 1.001 45 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.628 20.837 -21.604 30.021 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.042 4.042 3 C -0.203 4.203 4 C -0.082 4.082 5 C -0.208 4.208 6 C -0.184 4.184 7 C 0.396 3.604 8 O -0.399 6.399 9 O -0.249 6.249 10 C 0.019 3.981 11 H 0.137 0.863 12 C -0.223 4.223 13 C 0.286 3.714 14 O -0.460 6.460 15 N -0.331 5.331 16 C -0.075 4.075 17 C 0.139 3.861 18 C -0.584 4.584 19 H 0.070 0.930 20 C -0.191 4.191 21 N -0.566 5.566 22 Si 0.792 3.208 23 H -0.194 1.194 24 H -0.190 1.190 25 H -0.208 1.208 26 N -0.096 5.096 27 N -0.074 5.074 28 H 0.308 0.692 29 H 0.080 0.920 30 H 0.106 0.894 31 H 0.073 0.927 32 H 0.131 0.869 33 H 0.073 0.927 34 H 0.076 0.924 35 H 0.103 0.897 36 H 0.197 0.803 37 H 0.085 0.915 38 H 0.135 0.865 39 H 0.107 0.893 40 H 0.105 0.895 41 H 0.095 0.905 42 H 0.107 0.893 43 H 0.054 0.946 44 H 0.017 0.983 45 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -0.172 20.665 -20.368 29.016 hybrid contribution -0.510 -1.011 -0.181 1.147 sum -0.682 19.654 -20.549 28.443 Atomic orbital electron populations 1.21949 0.92944 1.02596 1.03907 1.19964 0.96836 0.96057 0.91340 1.21886 1.01600 0.93608 1.03235 1.21953 0.94973 1.01766 0.89545 1.21724 1.01101 1.02865 0.95093 1.20733 0.96841 1.06113 0.94696 1.19999 0.83202 0.77507 0.79738 1.90796 1.33987 1.52760 1.62332 1.86751 1.50335 1.61590 1.26203 1.22635 0.87383 0.92716 0.95357 0.86318 1.22421 0.96015 1.00871 1.02971 1.20630 0.86002 0.80886 0.83849 1.90674 1.19122 1.69153 1.67002 1.48036 1.12087 1.37590 1.35346 1.22272 0.79697 1.03969 1.01559 1.18861 0.93799 0.88549 0.84892 1.21714 1.40095 1.02664 0.93919 0.93050 1.25850 0.95751 1.02374 0.95125 1.70048 1.45616 1.36936 1.03951 0.85362 0.77990 0.78826 0.78590 1.19372 1.19011 1.20776 1.73805 1.05681 1.08491 1.21608 1.43500 1.22456 1.35343 1.06090 0.69158 0.91984 0.89425 0.92680 0.86873 0.92670 0.92439 0.89668 0.80253 0.91539 0.86494 0.89278 0.89463 0.90499 0.89252 0.94606 0.98256 0.92285 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.78 8.96 71.98 0.64 -0.14 16 2 C -0.02 -0.16 3.32 -11.54 -0.04 -0.20 16 3 C -0.15 -0.82 9.18 71.98 0.66 -0.16 16 4 C 0.04 0.67 5.92 41.40 0.24 0.92 16 5 C -0.18 -3.85 10.73 22.42 0.24 -3.61 16 6 C -0.03 -0.81 7.17 42.42 0.30 -0.51 16 7 C 0.55 19.11 7.94 70.29 0.56 19.67 16 8 O -0.51 -17.62 16.18 19.85 0.32 -17.30 16 9 O -0.33 -13.12 9.42 -50.06 -0.47 -13.59 16 10 C 0.08 2.76 2.18 29.85 0.07 2.82 16 11 H 0.12 3.93 6.42 -2.39 -0.02 3.91 16 12 C -0.17 -4.33 9.19 71.98 0.66 -3.67 16 13 C 0.50 23.20 7.15 87.66 0.63 23.83 16 14 O -0.58 -33.58 16.08 15.77 0.25 -33.33 16 15 N -0.60 -26.54 2.86 -851.12 -2.43 -28.97 16 16 C 0.07 2.00 8.80 127.77 1.12 3.12 16 17 C 0.26 14.37 5.16 85.63 0.44 14.81 16 18 C -0.55 -32.32 9.39 25.60 0.24 -32.08 16 19 H 0.05 3.04 7.81 -2.91 -0.02 3.02 16 20 C 0.01 0.48 5.46 84.66 0.46 0.94 16 21 N -0.93 -56.74 13.29 21.45 0.28 -56.46 16 22 Si 0.97 46.01 29.54 68.60 2.03 48.04 16 23 H -0.27 -12.52 7.11 99.48 0.71 -11.82 16 24 H -0.27 -11.78 7.11 99.48 0.71 -11.08 16 25 H -0.28 -13.30 7.11 99.48 0.71 -12.60 16 26 N -0.26 -7.37 12.24 -48.22 -0.59 -7.96 16 27 N -0.36 -6.40 6.64 -47.93 -0.32 -6.72 16 28 H 0.46 4.91 8.15 -220.00 -1.79 3.12 16 29 H 0.06 0.22 7.44 -2.39 -0.02 0.20 16 30 H 0.09 0.19 8.14 -2.39 -0.02 0.17 16 31 H 0.05 0.40 8.14 -2.39 -0.02 0.38 16 32 H 0.11 0.61 8.14 -2.39 -0.02 0.59 16 33 H 0.05 0.33 8.14 -2.38 -0.02 0.31 16 34 H 0.06 0.43 8.14 -2.39 -0.02 0.41 16 35 H 0.08 0.21 8.14 -2.39 -0.02 0.19 16 36 H 0.18 3.16 8.06 -2.91 -0.02 3.14 16 37 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 38 H 0.12 2.45 4.53 -2.39 -0.01 2.44 16 39 H 0.09 2.01 8.14 -2.39 -0.02 1.99 16 40 H 0.09 2.04 6.95 -2.39 -0.02 2.02 16 41 H 0.08 2.37 8.07 -2.39 -0.02 2.35 16 42 H 0.09 2.17 6.01 -2.39 -0.01 2.16 16 43 H 0.04 1.95 8.07 -2.39 -0.02 1.93 16 44 H 0.00 -0.05 7.42 -2.39 -0.02 -0.06 16 45 H 0.27 15.32 8.31 -92.71 -0.77 14.55 16 Total: -1.00 -85.96 380.47 4.54 -81.42 By element: Atomic # 1 Polarization: 9.90 SS G_CDS: -0.77 Total: 9.13 kcal Atomic # 6 Polarization: 19.51 SS G_CDS: 6.24 Total: 25.74 kcal Atomic # 7 Polarization: -97.05 SS G_CDS: -3.06 Total: -100.11 kcal Atomic # 8 Polarization: -64.32 SS G_CDS: 0.10 Total: -64.22 kcal Atomic # 14 Polarization: 46.01 SS G_CDS: 2.03 Total: 48.04 kcal Total: -85.96 4.54 -81.42 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000919215229.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.386 kcal (2) G-P(sol) polarization free energy of solvation -85.956 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.571 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.420 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.034 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds