Wall clock time and date at job start Tue Mar 31 2020 14:35:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46494 * 109.47272 * 2 1 4 4 C 1.46504 * 120.00066 * 269.99920 * 3 2 1 5 5 C 1.50699 * 109.47132 * 269.99942 * 4 3 2 6 6 H 1.07998 * 119.99927 * 0.02562 * 5 4 3 7 7 C 1.37871 * 120.00032 * 179.97438 * 5 4 3 8 8 N 1.31516 * 120.00030 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 120.00100 * 179.97438 * 7 5 4 10 10 H 1.48509 * 109.46944 * 90.00330 * 9 7 5 11 11 H 1.48504 * 109.47480 * 210.00125 * 9 7 5 12 12 H 1.48496 * 109.47493 * 330.00506 * 9 7 5 13 13 C 1.34775 * 119.99896 * 89.99961 * 3 2 1 14 14 O 1.21282 * 119.99875 * 179.97438 * 13 3 2 15 15 C 1.50692 * 120.00074 * 0.02562 * 13 3 2 16 16 O 1.45207 * 109.47424 * 180.02562 * 15 13 3 17 17 C 1.34721 * 117.00178 * 179.97438 * 16 15 13 18 18 O 1.21485 * 120.00471 * 0.02562 * 17 16 15 19 19 C 1.47590 * 119.99956 * 179.97438 * 17 16 15 20 20 C 1.41538 * 126.52558 * 179.97438 * 19 17 16 21 21 C 1.35345 * 105.50202 * 180.02562 * 20 19 17 22 22 C 1.50708 * 126.38069 * 180.02562 * 21 20 19 23 23 C 1.52997 * 109.47141 * 215.00265 * 22 21 20 24 24 C 1.52992 * 109.47025 * 94.99872 * 22 21 20 25 25 N 1.35046 * 107.24313 * 0.26457 * 21 20 19 26 26 H 0.96999 * 124.87806 * 179.71369 * 25 21 20 27 27 N 1.28471 * 110.23744 * 359.54909 * 25 21 20 28 28 H 1.08997 * 109.47192 * 300.00356 * 1 2 3 29 29 H 1.09001 * 109.47076 * 59.99952 * 1 2 3 30 30 H 1.09005 * 109.47335 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.46890 * 239.99745 * 2 1 3 32 32 H 1.09005 * 109.46635 * 120.00238 * 2 1 3 33 33 H 1.08998 * 109.46818 * 29.99809 * 4 3 2 34 34 H 1.08996 * 109.47104 * 149.99671 * 4 3 2 35 35 H 0.96999 * 119.99988 * 179.97438 * 8 7 5 36 36 H 1.08993 * 109.47662 * 59.99757 * 15 13 3 37 37 H 1.09008 * 109.47401 * 299.99600 * 15 13 3 38 38 H 1.08006 * 127.25290 * 0.03109 * 20 19 17 39 39 H 1.09002 * 109.46828 * 335.00134 * 22 21 20 40 40 H 1.09002 * 109.47153 * 299.99670 * 23 22 21 41 41 H 1.09001 * 109.46832 * 179.97438 * 23 22 21 42 42 H 1.09004 * 109.47261 * 59.99842 * 23 22 21 43 43 H 1.09001 * 109.47066 * 180.02562 * 24 22 21 44 44 H 1.08996 * 109.47747 * 300.00019 * 24 22 21 45 45 H 1.09002 * 109.47103 * 60.00431 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.2626 2.0718 -1.2688 5 6 3.6859 1.8349 -1.7038 6 1 4.3427 1.2301 -1.0962 7 6 4.1492 2.3895 -2.8779 8 7 3.3492 3.1256 -3.6181 9 14 5.9136 2.0966 -3.4168 10 1 5.9776 0.8752 -4.2591 11 1 6.3923 3.2638 -4.2003 12 1 6.7737 1.9177 -2.2195 13 6 2.2430 2.0165 1.1672 14 8 2.6477 3.1597 1.1672 15 6 1.9924 1.3059 2.4722 16 8 2.3062 2.1957 3.5760 17 6 2.1344 1.7102 4.8209 18 8 1.7338 0.5744 4.9801 19 6 2.4339 2.5579 5.9913 20 6 2.3037 2.1915 7.3523 21 6 2.6881 3.2803 8.0584 22 6 2.7311 3.4025 9.5599 23 6 2.3575 4.8294 9.9663 24 6 4.1422 3.0834 10.0574 25 7 3.0210 4.2385 7.1670 26 1 3.3298 5.1284 7.3986 27 7 2.8732 3.8009 5.9681 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 1.5818 1.6876 -2.0284 34 1 2.0956 3.1409 -1.1384 35 1 3.6753 3.5161 -4.4439 36 1 2.6228 0.4186 2.5298 37 1 0.9444 1.0114 2.5302 38 1 1.9682 1.2428 7.7447 39 1 2.0229 2.7016 10.0019 40 1 3.0657 5.5303 9.5244 41 1 2.3881 4.9177 11.0523 42 1 1.3521 5.0568 9.6119 43 1 4.1732 3.1713 11.1434 44 1 4.4084 2.0668 9.7679 45 1 4.8505 3.7842 9.6154 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000919217411.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:35:57 Heat of formation + Delta-G solvation = -53.307408 kcal Electronic energy + Delta-G solvation = -26771.093669 eV Core-core repulsion = 22790.554493 eV Total energy + Delta-G solvation = -3980.539176 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -43.05617 -40.24487 -38.82324 -36.28719 -36.20230 -35.23652 -32.81128 -32.27024 -30.28132 -30.11176 -29.06714 -27.74852 -26.62046 -24.70302 -23.16222 -23.01147 -22.39562 -21.32802 -20.21283 -18.59448 -18.04980 -17.29071 -16.74826 -16.53500 -16.36849 -15.88491 -15.78530 -15.27842 -15.19063 -14.45272 -14.38280 -14.19159 -13.97852 -13.55842 -13.42701 -13.24776 -12.86277 -12.79762 -12.49371 -12.07775 -12.01723 -11.93968 -11.80033 -11.67532 -11.58689 -11.19766 -11.00569 -10.90950 -10.84183 -10.78366 -10.56171 -10.46539 -10.11383 -9.73877 -9.62350 -9.30437 -8.92910 -8.41718 -7.70114 -6.02655 -4.07217 1.21437 1.73040 2.27319 2.73635 3.05752 3.31457 3.32945 3.39058 3.44734 3.85930 4.05163 4.19311 4.36267 4.47202 4.52020 4.80956 4.93162 4.98073 5.02933 5.08739 5.22005 5.24938 5.27486 5.28893 5.32002 5.41270 5.44315 5.46927 5.63425 5.67883 5.70391 5.77976 5.99892 6.04445 6.23360 6.34434 6.49204 6.63604 7.04121 7.44098 7.47286 7.53189 7.82246 7.93903 8.24166 8.34959 8.89512 9.04614 9.57641 11.05512 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.017917 B = 0.002421 C = 0.002247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1562.420237 B =11563.074796 C =12459.415740 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.102 3.898 3 N -0.593 5.593 4 C 0.248 3.752 5 C -0.527 4.527 6 H 0.058 0.942 7 C 0.061 3.939 8 N -0.895 5.895 9 Si 0.899 3.101 10 H -0.280 1.280 11 H -0.285 1.285 12 H -0.274 1.274 13 C 0.507 3.493 14 O -0.516 6.516 15 C 0.049 3.951 16 O -0.313 6.313 17 C 0.554 3.446 18 O -0.503 6.503 19 C 0.003 3.997 20 C -0.170 4.170 21 C 0.019 3.981 22 C -0.026 4.026 23 C -0.156 4.156 24 C -0.148 4.148 25 N -0.373 5.373 26 H 0.446 0.554 27 N -0.218 5.218 28 H 0.050 0.950 29 H 0.063 0.937 30 H 0.062 0.938 31 H 0.087 0.913 32 H 0.065 0.935 33 H 0.036 0.964 34 H 0.045 0.955 35 H 0.263 0.737 36 H 0.097 0.903 37 H 0.096 0.904 38 H 0.166 0.834 39 H 0.100 0.900 40 H 0.054 0.946 41 H 0.070 0.930 42 H 0.062 0.938 43 H 0.066 0.934 44 H 0.063 0.937 45 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.175 -2.313 27.229 27.644 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.022 4.022 3 N -0.327 5.327 4 C 0.129 3.871 5 C -0.566 4.566 6 H 0.076 0.924 7 C -0.141 4.141 8 N -0.534 5.534 9 Si 0.726 3.274 10 H -0.206 1.206 11 H -0.211 1.211 12 H -0.199 1.199 13 C 0.291 3.709 14 O -0.391 6.391 15 C -0.028 4.028 16 O -0.226 6.226 17 C 0.396 3.604 18 O -0.390 6.390 19 C -0.155 4.155 20 C -0.197 4.197 21 C -0.106 4.106 22 C -0.046 4.046 23 C -0.213 4.213 24 C -0.206 4.206 25 N -0.089 5.089 26 H 0.291 0.709 27 N -0.055 5.055 28 H 0.069 0.931 29 H 0.082 0.918 30 H 0.081 0.919 31 H 0.106 0.894 32 H 0.083 0.917 33 H 0.054 0.946 34 H 0.063 0.937 35 H 0.073 0.927 36 H 0.115 0.885 37 H 0.114 0.886 38 H 0.184 0.816 39 H 0.118 0.882 40 H 0.073 0.927 41 H 0.089 0.911 42 H 0.082 0.918 43 H 0.085 0.915 44 H 0.083 0.917 45 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -3.802 -1.133 26.259 26.557 hybrid contribution 0.853 -0.522 0.116 1.007 sum -2.949 -1.655 26.374 26.590 Atomic orbital electron populations 1.22237 0.96568 1.01662 1.02426 1.21507 0.93739 0.83979 1.03022 1.48198 1.64000 1.13403 1.07085 1.19322 0.96428 0.93729 0.77581 1.21434 0.96896 1.31955 1.06266 0.92384 1.24934 0.97901 0.94896 0.96397 1.69933 1.35711 1.33400 1.14323 0.86486 0.84656 0.77640 0.78581 1.20646 1.21093 1.19872 1.19686 0.79775 0.87173 0.84251 1.90730 1.44202 1.17467 1.86673 1.23027 1.02818 0.92646 0.84341 1.86706 1.78087 1.44202 1.13654 1.19601 0.74140 0.84345 0.82292 1.90845 1.43054 1.18375 1.86683 1.20702 1.10111 0.92369 0.92362 1.21452 1.07737 1.00384 0.90151 1.21417 1.05151 0.89995 0.94003 1.19786 0.99305 0.99095 0.86385 1.21920 1.01893 0.94971 1.02524 1.21887 0.94798 1.02525 1.01340 1.43453 1.48131 1.14641 1.02639 0.70859 1.73917 1.15577 1.12332 1.03677 0.93090 0.91825 0.91913 0.89450 0.91708 0.94637 0.93712 0.92711 0.88484 0.88576 0.81621 0.88193 0.92737 0.91112 0.91849 0.91533 0.91746 0.92553 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.32 10.24 37.16 0.38 -1.94 16 2 C 0.10 1.64 5.93 -4.04 -0.02 1.62 16 3 N -0.59 -12.80 2.46 -175.06 -0.43 -13.23 16 4 C 0.25 6.54 5.16 -5.19 -0.03 6.51 16 5 C -0.53 -15.09 9.39 -34.44 -0.32 -15.42 16 6 H 0.06 1.66 7.81 -52.49 -0.41 1.25 16 7 C 0.06 1.75 5.46 -17.82 -0.10 1.66 16 8 N -0.89 -26.80 13.29 55.43 0.74 -26.06 16 9 Si 0.90 22.15 29.54 -169.99 -5.02 17.13 16 10 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 11 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 12 H -0.27 -6.76 7.11 56.52 0.40 -6.36 16 13 C 0.51 11.22 7.75 -10.99 -0.09 11.13 16 14 O -0.52 -13.90 16.08 -14.10 -0.23 -14.13 16 15 C 0.05 0.85 4.51 36.00 0.16 1.02 16 16 O -0.31 -5.88 9.77 -47.23 -0.46 -6.34 16 17 C 0.55 9.14 7.97 34.55 0.28 9.42 16 18 O -0.50 -8.44 16.72 -19.25 -0.32 -8.76 16 19 C 0.00 0.04 7.17 -82.78 -0.59 -0.55 16 20 C -0.17 -1.82 10.73 -39.36 -0.42 -2.24 16 21 C 0.02 0.16 5.92 -82.21 -0.49 -0.33 16 22 C -0.03 -0.12 3.32 -91.77 -0.30 -0.43 16 23 C -0.16 -0.54 8.94 37.16 0.33 -0.21 16 24 C -0.15 -0.64 9.17 37.15 0.34 -0.30 16 25 N -0.37 -3.43 6.64 33.50 0.22 -3.21 16 26 H 0.45 2.59 8.13 -190.44 -1.55 1.04 16 27 N -0.22 -3.03 12.24 33.41 0.41 -2.63 16 28 H 0.05 0.67 7.22 -51.93 -0.38 0.30 16 29 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 30 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 31 H 0.09 1.44 8.07 -51.93 -0.42 1.02 16 32 H 0.06 0.88 6.44 -51.93 -0.33 0.55 16 33 H 0.04 0.93 8.07 -51.93 -0.42 0.52 16 34 H 0.04 1.33 7.42 -51.93 -0.39 0.95 16 35 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 36 H 0.10 1.50 7.40 -51.93 -0.38 1.12 16 37 H 0.10 1.43 7.18 -51.92 -0.37 1.06 16 38 H 0.17 1.49 8.06 -52.48 -0.42 1.06 16 39 H 0.10 0.39 8.14 -51.93 -0.42 -0.04 16 40 H 0.05 0.16 7.43 -51.93 -0.39 -0.23 16 41 H 0.07 0.18 8.14 -51.93 -0.42 -0.25 16 42 H 0.06 0.26 8.14 -51.93 -0.42 -0.17 16 43 H 0.07 0.20 8.14 -51.93 -0.42 -0.22 16 44 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 45 H 0.06 0.26 8.14 -51.93 -0.42 -0.17 16 LS Contribution 386.37 15.07 5.82 5.82 Total: -1.00 -36.97 386.37 -8.12 -45.09 By element: Atomic # 1 Polarization: 4.35 SS G_CDS: -7.97 Total: -3.62 kcal Atomic # 6 Polarization: 10.82 SS G_CDS: -0.87 Total: 9.95 kcal Atomic # 7 Polarization: -46.06 SS G_CDS: 0.94 Total: -45.13 kcal Atomic # 8 Polarization: -28.23 SS G_CDS: -1.01 Total: -29.24 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -5.02 Total: 17.13 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -36.97 -8.12 -45.09 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000919217411.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.221 kcal (2) G-P(sol) polarization free energy of solvation -36.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.191 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.117 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.086 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.307 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds