Wall clock time and date at job start Tue Mar 31 2020 14:35:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46494 * 109.47272 * 2 1 4 4 C 1.46504 * 120.00066 * 269.99920 * 3 2 1 5 5 C 1.50699 * 109.47132 * 269.99942 * 4 3 2 6 6 H 1.07998 * 119.99927 * 0.02562 * 5 4 3 7 7 C 1.37871 * 120.00032 * 179.97438 * 5 4 3 8 8 N 1.31516 * 120.00030 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 120.00100 * 179.97438 * 7 5 4 10 10 H 1.48509 * 109.46944 * 90.00330 * 9 7 5 11 11 H 1.48504 * 109.47480 * 210.00125 * 9 7 5 12 12 H 1.48496 * 109.47493 * 330.00506 * 9 7 5 13 13 C 1.34775 * 119.99896 * 89.99961 * 3 2 1 14 14 O 1.21282 * 119.99875 * 179.97438 * 13 3 2 15 15 C 1.50692 * 120.00074 * 0.02562 * 13 3 2 16 16 O 1.45207 * 109.47424 * 180.02562 * 15 13 3 17 17 C 1.34721 * 117.00178 * 179.97438 * 16 15 13 18 18 O 1.21485 * 120.00471 * 0.02562 * 17 16 15 19 19 C 1.47590 * 119.99956 * 179.97438 * 17 16 15 20 20 C 1.41538 * 126.52558 * 179.97438 * 19 17 16 21 21 C 1.35345 * 105.50202 * 180.02562 * 20 19 17 22 22 C 1.50708 * 126.38069 * 180.02562 * 21 20 19 23 23 C 1.52997 * 109.47141 * 215.00265 * 22 21 20 24 24 C 1.52992 * 109.47025 * 94.99872 * 22 21 20 25 25 N 1.35046 * 107.24313 * 0.26457 * 21 20 19 26 26 H 0.96999 * 124.87806 * 179.71369 * 25 21 20 27 27 N 1.28471 * 110.23744 * 359.54909 * 25 21 20 28 28 H 1.08997 * 109.47192 * 300.00356 * 1 2 3 29 29 H 1.09001 * 109.47076 * 59.99952 * 1 2 3 30 30 H 1.09005 * 109.47335 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.46890 * 239.99745 * 2 1 3 32 32 H 1.09005 * 109.46635 * 120.00238 * 2 1 3 33 33 H 1.08998 * 109.46818 * 29.99809 * 4 3 2 34 34 H 1.08996 * 109.47104 * 149.99671 * 4 3 2 35 35 H 0.96999 * 119.99988 * 179.97438 * 8 7 5 36 36 H 1.08993 * 109.47662 * 59.99757 * 15 13 3 37 37 H 1.09008 * 109.47401 * 299.99600 * 15 13 3 38 38 H 1.08006 * 127.25290 * 0.03109 * 20 19 17 39 39 H 1.09002 * 109.46828 * 335.00134 * 22 21 20 40 40 H 1.09002 * 109.47153 * 299.99670 * 23 22 21 41 41 H 1.09001 * 109.46832 * 179.97438 * 23 22 21 42 42 H 1.09004 * 109.47261 * 59.99842 * 23 22 21 43 43 H 1.09001 * 109.47066 * 180.02562 * 24 22 21 44 44 H 1.08996 * 109.47747 * 300.00019 * 24 22 21 45 45 H 1.09002 * 109.47103 * 60.00431 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.2626 2.0718 -1.2688 5 6 3.6859 1.8349 -1.7038 6 1 4.3427 1.2301 -1.0962 7 6 4.1492 2.3895 -2.8779 8 7 3.3492 3.1256 -3.6181 9 14 5.9136 2.0966 -3.4168 10 1 5.9776 0.8752 -4.2591 11 1 6.3923 3.2638 -4.2003 12 1 6.7737 1.9177 -2.2195 13 6 2.2430 2.0165 1.1672 14 8 2.6477 3.1597 1.1672 15 6 1.9924 1.3059 2.4722 16 8 2.3062 2.1957 3.5760 17 6 2.1344 1.7102 4.8209 18 8 1.7338 0.5744 4.9801 19 6 2.4339 2.5579 5.9913 20 6 2.3037 2.1915 7.3523 21 6 2.6881 3.2803 8.0584 22 6 2.7311 3.4025 9.5599 23 6 2.3575 4.8294 9.9663 24 6 4.1422 3.0834 10.0574 25 7 3.0210 4.2385 7.1670 26 1 3.3298 5.1284 7.3986 27 7 2.8732 3.8009 5.9681 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 1.5818 1.6876 -2.0284 34 1 2.0956 3.1409 -1.1384 35 1 3.6753 3.5161 -4.4439 36 1 2.6228 0.4186 2.5298 37 1 0.9444 1.0114 2.5302 38 1 1.9682 1.2428 7.7447 39 1 2.0229 2.7016 10.0019 40 1 3.0657 5.5303 9.5244 41 1 2.3881 4.9177 11.0523 42 1 1.3521 5.0568 9.6119 43 1 4.1732 3.1713 11.1434 44 1 4.4084 2.0668 9.7679 45 1 4.8505 3.7842 9.6154 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000919217411.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:35:56 Heat of formation + Delta-G solvation = -77.391698 kcal Electronic energy + Delta-G solvation = -26772.138043 eV Core-core repulsion = 22790.554493 eV Total energy + Delta-G solvation = -3981.583549 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -43.90419 -41.62051 -40.48988 -37.65178 -36.97959 -36.66399 -34.94367 -33.17458 -31.75248 -31.08983 -30.51874 -28.50076 -28.02423 -25.93839 -24.77851 -24.11848 -23.61014 -22.10627 -21.29235 -20.25839 -19.03978 -18.66827 -18.22220 -18.05145 -17.86625 -17.36515 -16.90376 -16.73759 -16.17678 -15.86888 -15.75504 -15.00557 -14.86049 -14.70799 -14.62091 -14.49799 -13.97569 -13.88948 -13.84648 -13.60170 -13.28377 -13.08358 -13.04518 -12.68490 -12.51156 -12.45121 -12.23513 -12.18718 -12.11809 -12.07005 -12.02177 -11.80507 -11.72728 -11.68126 -10.74517 -10.64733 -10.64196 -10.08208 -9.55032 -8.23729 -6.38128 0.11922 0.98289 1.09025 1.35900 1.39316 1.49400 1.60829 1.89359 1.95246 2.32354 2.44581 3.06111 3.25674 3.42345 3.48055 3.78427 3.88142 3.96152 4.14703 4.16370 4.19967 4.30200 4.38970 4.54091 4.60110 4.62149 4.77877 4.87600 4.95255 4.97277 5.00258 5.03043 5.07923 5.15825 5.19746 5.21618 5.35627 5.37227 5.39412 5.54033 5.79422 5.96274 6.03793 6.39911 6.60646 6.70914 6.78621 7.20789 7.36110 8.83807 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.017917 B = 0.002421 C = 0.002247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1562.420237 B =11563.074796 C =12459.415740 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.093 3.907 3 N -0.594 5.594 4 C 0.263 3.737 5 C -0.544 4.544 6 H 0.054 0.946 7 C 0.007 3.993 8 N -0.927 5.927 9 Si 0.969 3.031 10 H -0.261 1.261 11 H -0.281 1.281 12 H -0.275 1.275 13 C 0.499 3.501 14 O -0.578 6.578 15 C 0.061 3.939 16 O -0.340 6.340 17 C 0.554 3.446 18 O -0.510 6.510 19 C -0.027 4.027 20 C -0.179 4.179 21 C 0.043 3.957 22 C -0.021 4.021 23 C -0.156 4.156 24 C -0.147 4.147 25 N -0.356 5.356 26 H 0.460 0.540 27 N -0.259 5.259 28 H 0.056 0.944 29 H 0.044 0.956 30 H 0.099 0.901 31 H 0.083 0.917 32 H 0.099 0.901 33 H 0.031 0.969 34 H -0.002 1.002 35 H 0.268 0.732 36 H 0.122 0.878 37 H 0.127 0.873 38 H 0.182 0.818 39 H 0.115 0.885 40 H 0.060 0.940 41 H 0.086 0.914 42 H 0.057 0.943 43 H 0.085 0.915 44 H 0.055 0.945 45 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.826 -3.885 29.722 30.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.029 4.029 3 N -0.327 5.327 4 C 0.142 3.858 5 C -0.583 4.583 6 H 0.072 0.928 7 C -0.192 4.192 8 N -0.567 5.567 9 Si 0.793 3.207 10 H -0.186 1.186 11 H -0.206 1.206 12 H -0.200 1.200 13 C 0.286 3.714 14 O -0.458 6.458 15 C -0.016 4.016 16 O -0.255 6.255 17 C 0.398 3.602 18 O -0.397 6.397 19 C -0.184 4.184 20 C -0.206 4.206 21 C -0.083 4.083 22 C -0.041 4.041 23 C -0.214 4.214 24 C -0.205 4.205 25 N -0.075 5.075 26 H 0.308 0.692 27 N -0.098 5.098 28 H 0.075 0.925 29 H 0.063 0.937 30 H 0.118 0.882 31 H 0.101 0.899 32 H 0.117 0.883 33 H 0.049 0.951 34 H 0.016 0.984 35 H 0.077 0.923 36 H 0.140 0.860 37 H 0.144 0.856 38 H 0.199 0.801 39 H 0.133 0.867 40 H 0.079 0.921 41 H 0.105 0.895 42 H 0.076 0.924 43 H 0.104 0.896 44 H 0.075 0.925 45 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -3.481 -2.756 28.761 29.102 hybrid contribution 0.714 0.004 -0.562 0.908 sum -2.768 -2.752 28.199 28.468 Atomic orbital electron populations 1.22182 0.94281 1.03853 1.01828 1.21891 0.95610 0.80869 1.04512 1.48203 1.63610 1.15319 1.05543 1.18794 0.95647 0.91615 0.79744 1.21695 0.97819 1.32182 1.06588 0.92802 1.25864 1.02477 0.94427 0.96417 1.70050 1.37790 1.34077 1.14781 0.85399 0.78869 0.78276 0.78156 1.18582 1.20603 1.19965 1.20520 0.78388 0.86635 0.85855 1.90690 1.47061 1.20292 1.87735 1.22931 1.05065 0.91974 0.81624 1.86701 1.78732 1.45262 1.14772 1.19930 0.73733 0.84661 0.81904 1.90814 1.43632 1.18605 1.86634 1.20742 1.12024 0.92830 0.92788 1.21725 1.08345 1.01846 0.88707 1.21964 1.02324 0.88563 0.95457 1.19959 1.00178 1.00500 0.83500 1.21947 1.01707 0.94041 1.03673 1.21893 0.94119 1.01925 1.02544 1.43513 1.46771 1.15430 1.01742 0.69207 1.73831 1.17191 1.12764 1.05971 0.92452 0.93714 0.88235 0.89867 0.88300 0.95069 0.98392 0.92346 0.86008 0.85572 0.80109 0.86677 0.92132 0.89484 0.92388 0.89648 0.92547 0.92868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.14 10.24 71.98 0.74 -3.41 16 2 C 0.09 2.89 5.93 86.38 0.51 3.40 16 3 N -0.59 -26.17 2.46 -826.17 -2.03 -28.19 16 4 C 0.26 14.52 5.16 85.63 0.44 14.96 16 5 C -0.54 -32.06 9.39 25.60 0.24 -31.82 16 6 H 0.05 3.14 7.81 -2.91 -0.02 3.12 16 7 C 0.01 0.42 5.46 84.65 0.46 0.89 16 8 N -0.93 -56.92 13.29 21.45 0.28 -56.64 16 9 Si 0.97 45.82 29.54 68.60 2.03 47.84 16 10 H -0.26 -11.49 7.11 99.48 0.71 -10.78 16 11 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 12 H -0.27 -12.94 7.11 99.48 0.71 -12.23 16 13 C 0.50 22.67 7.75 87.65 0.68 23.35 16 14 O -0.58 -32.93 16.08 15.76 0.25 -32.68 16 15 C 0.06 2.07 4.51 71.23 0.32 2.39 16 16 O -0.34 -12.98 9.77 -49.92 -0.49 -13.47 16 17 C 0.55 18.27 7.97 70.29 0.56 18.83 16 18 O -0.51 -16.58 16.72 19.88 0.33 -16.25 16 19 C -0.03 -0.78 7.17 42.42 0.30 -0.48 16 20 C -0.18 -3.62 10.73 22.42 0.24 -3.38 16 21 C 0.04 0.63 5.92 41.40 0.25 0.88 16 22 C -0.02 -0.14 3.32 -11.54 -0.04 -0.18 16 23 C -0.16 -0.65 8.94 71.98 0.64 0.00 16 24 C -0.15 -0.87 9.17 71.98 0.66 -0.21 16 25 N -0.36 -6.26 6.64 -47.93 -0.32 -6.58 16 26 H 0.46 4.82 8.13 -219.99 -1.79 3.03 16 27 N -0.26 -7.28 12.24 -48.22 -0.59 -7.88 16 28 H 0.06 1.38 7.22 -2.39 -0.02 1.37 16 29 H 0.04 1.30 8.14 -2.39 -0.02 1.28 16 30 H 0.10 1.83 8.14 -2.38 -0.02 1.81 16 31 H 0.08 2.67 8.07 -2.38 -0.02 2.65 16 32 H 0.10 2.41 6.44 -2.38 -0.02 2.40 16 33 H 0.03 1.72 8.07 -2.39 -0.02 1.70 16 34 H 0.00 -0.13 7.42 -2.39 -0.02 -0.15 16 35 H 0.27 15.37 8.31 -92.71 -0.77 14.60 16 36 H 0.12 3.53 7.40 -2.39 -0.02 3.52 16 37 H 0.13 3.52 7.18 -2.38 -0.02 3.50 16 38 H 0.18 2.94 8.06 -2.91 -0.02 2.92 16 39 H 0.12 0.50 8.14 -2.39 -0.02 0.48 16 40 H 0.06 0.18 7.43 -2.39 -0.02 0.17 16 41 H 0.09 0.13 8.14 -2.39 -0.02 0.11 16 42 H 0.06 0.33 8.14 -2.38 -0.02 0.31 16 43 H 0.08 0.22 8.14 -2.39 -0.02 0.21 16 44 H 0.06 0.45 8.14 -2.39 -0.02 0.43 16 45 H 0.05 0.36 8.14 -2.39 -0.02 0.34 16 Total: -1.00 -84.82 386.37 4.70 -80.12 By element: Atomic # 1 Polarization: 9.27 SS G_CDS: -0.78 Total: 8.49 kcal Atomic # 6 Polarization: 19.21 SS G_CDS: 6.01 Total: 25.22 kcal Atomic # 7 Polarization: -96.63 SS G_CDS: -2.65 Total: -99.28 kcal Atomic # 8 Polarization: -62.49 SS G_CDS: 0.10 Total: -62.39 kcal Atomic # 14 Polarization: 45.82 SS G_CDS: 2.03 Total: 47.84 kcal Total: -84.82 4.70 -80.12 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000919217411.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.724 kcal (2) G-P(sol) polarization free energy of solvation -84.816 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.092 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.700 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.116 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.392 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds