Wall clock time and date at job start Tue Mar 31 2020 14:28:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09004 * 109.47214 * 2 1 4 4 C 1.50706 * 109.46763 * 240.00605 * 2 1 3 5 5 O 1.21281 * 119.99699 * 239.99570 * 4 2 1 6 6 N 1.34773 * 120.00080 * 60.00061 * 4 2 1 7 7 C 1.46499 * 120.00036 * 359.72107 * 6 4 2 8 8 C 1.46506 * 119.99969 * 180.02562 * 6 4 2 9 9 C 1.50703 * 109.46877 * 269.72057 * 8 6 4 10 10 O 1.20827 * 119.99774 * 0.02562 * 9 8 6 11 11 O 1.34222 * 119.99956 * 179.97438 * 9 8 6 12 12 C 1.45206 * 117.00281 * 180.02562 * 11 9 8 13 13 C 1.52993 * 109.47133 * 180.02562 * 12 11 9 14 14 C 1.53008 * 109.47033 * 180.02562 * 13 12 11 15 15 C 1.50700 * 109.46931 * 180.02562 * 14 13 12 16 16 H 1.07997 * 120.00539 * 359.97438 * 15 14 13 17 17 C 1.37880 * 119.99696 * 179.97438 * 15 14 13 18 18 N 1.31520 * 120.00015 * 359.97438 * 17 15 14 19 19 Si 1.86794 * 120.00049 * 180.02562 * 17 15 14 20 20 H 1.48499 * 109.47403 * 59.99863 * 19 17 15 21 21 H 1.48506 * 109.47275 * 179.97438 * 19 17 15 22 22 H 1.48501 * 109.46957 * 299.99447 * 19 17 15 23 23 N 1.46500 * 109.47277 * 120.00513 * 2 1 3 24 24 C 1.34940 * 126.03723 * 35.00037 * 23 2 1 25 25 C 1.35318 * 107.74670 * 179.97438 * 24 23 2 26 26 C 1.39878 * 107.91661 * 359.97438 * 25 24 23 27 27 N 1.30830 * 108.20404 * 359.74110 * 26 25 24 28 28 H 1.09002 * 109.46848 * 299.99518 * 1 2 3 29 29 H 1.09000 * 109.47019 * 59.99173 * 1 2 3 30 30 H 1.08995 * 109.46910 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47269 * 270.27384 * 7 6 4 32 32 H 1.08994 * 109.47173 * 30.28203 * 7 6 4 33 33 H 1.09005 * 109.47077 * 150.28374 * 7 6 4 34 34 H 1.09000 * 109.46803 * 29.71536 * 8 6 4 35 35 H 1.09000 * 109.47214 * 149.72329 * 8 6 4 36 36 H 1.08998 * 109.46517 * 300.00397 * 12 11 9 37 37 H 1.09006 * 109.46368 * 60.00052 * 12 11 9 38 38 H 1.09003 * 109.47422 * 300.00001 * 13 12 11 39 39 H 1.08998 * 109.47806 * 60.00302 * 13 12 11 40 40 H 1.09003 * 109.46643 * 300.00020 * 14 13 12 41 41 H 1.08995 * 109.47176 * 59.99787 * 14 13 12 42 42 H 0.96997 * 120.00380 * 180.02562 * 18 17 15 43 43 H 1.08001 * 126.12703 * 359.95401 * 24 23 2 44 44 H 1.07997 * 126.04431 * 179.97438 * 25 24 23 45 45 H 1.08003 * 125.89426 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2306 5 8 2.7296 -1.6964 -1.1194 6 7 1.7067 -0.2497 -2.4546 7 6 0.8595 0.9378 -2.5889 8 6 2.1945 -0.9406 -3.6509 9 6 3.5190 -0.3530 -4.0653 10 8 4.0056 0.5498 -3.4266 11 8 4.1584 -0.8333 -5.1433 12 6 5.4298 -0.2199 -5.4833 13 6 6.0037 -0.8939 -6.7311 14 6 7.3437 -0.2479 -7.0891 15 6 7.9087 -0.9113 -8.3186 16 1 7.3665 -1.7137 -8.7967 17 6 9.1178 -0.4939 -8.8331 18 7 9.7779 0.4836 -8.2512 19 14 9.8178 -1.3157 -10.3576 20 1 8.8702 -1.1499 -11.4887 21 1 11.1179 -0.6880 -10.7056 22 1 10.0218 -2.7622 -10.0906 23 7 2.0184 -0.6907 1.1961 24 6 1.4404 -1.7560 1.7893 25 6 2.1969 -2.0932 2.8593 26 6 3.2747 -1.2037 2.9218 27 7 3.1719 -0.3662 1.9219 28 1 -0.3633 0.5138 0.8901 29 1 -0.3633 0.5140 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 -0.1874 0.6358 -2.6194 32 1 1.0224 1.5985 -1.7375 33 1 1.1130 1.4628 -3.5100 34 1 2.3200 -2.0011 -3.4322 35 1 1.4741 -0.8191 -4.4598 36 1 5.2798 0.8416 -5.6804 37 1 6.1250 -0.3405 -4.6524 38 1 6.1536 -1.9555 -6.5344 39 1 5.3084 -0.7730 -7.5618 40 1 7.1942 0.8138 -7.2857 41 1 8.0389 -0.3692 -6.2584 42 1 10.6283 0.7776 -8.6134 43 1 0.5357 -2.2507 1.4678 44 1 2.0030 -2.9054 3.5441 45 1 4.0589 -1.2103 3.6643 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000920547157.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:28:56 Heat of formation + Delta-G solvation = -33.094057 kcal Electronic energy + Delta-G solvation = -26734.207590 eV Core-core repulsion = 22754.544930 eV Total energy + Delta-G solvation = -3979.662660 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.67183 -40.68063 -39.69360 -36.71165 -35.91208 -34.97171 -33.99986 -31.76335 -30.60886 -30.18289 -29.01668 -27.43021 -26.86213 -24.90981 -23.38845 -21.96186 -21.26209 -20.75976 -20.33560 -19.62428 -17.85595 -17.75825 -17.73699 -16.72144 -16.37541 -16.30260 -15.99935 -15.36336 -14.88460 -14.65973 -14.47217 -14.21777 -14.18464 -13.90897 -13.77549 -13.25817 -13.09836 -13.03588 -12.87190 -12.65303 -12.25766 -12.20112 -12.14037 -11.95162 -11.86932 -10.95602 -10.88277 -10.74775 -10.65034 -10.54567 -10.47047 -10.40290 -9.73294 -9.64077 -9.58287 -9.26949 -9.15288 -8.81851 -8.38554 -6.03296 -4.06610 1.52824 1.97092 2.00135 2.26304 2.45645 2.69139 3.01840 3.32533 3.36784 3.39386 3.75407 4.01503 4.25266 4.42988 4.46038 4.53252 4.66739 4.70460 4.74698 4.80157 4.92686 4.96937 5.07284 5.12806 5.27077 5.32373 5.37880 5.55940 5.55947 5.61446 5.72401 5.79937 5.99759 6.41504 6.46232 6.52905 6.60760 6.77908 6.82275 6.97257 7.49139 7.57026 7.59669 7.70762 7.86717 7.94697 8.35565 8.99355 9.57531 11.08123 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.021922 B = 0.002017 C = 0.001920 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1276.936368 B =13876.305002 C =14583.277875 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.148 3.852 3 H 0.131 0.869 4 C 0.508 3.492 5 O -0.510 6.510 6 N -0.599 5.599 7 C 0.071 3.929 8 C 0.124 3.876 9 C 0.439 3.561 10 O -0.504 6.504 11 O -0.357 6.357 12 C 0.070 3.930 13 C -0.108 4.108 14 C 0.024 3.976 15 C -0.522 4.522 16 H 0.057 0.943 17 C 0.056 3.944 18 N -0.895 5.895 19 Si 0.896 3.104 20 H -0.276 1.276 21 H -0.287 1.287 22 H -0.276 1.276 23 N -0.358 5.358 24 C 0.065 3.935 25 C -0.273 4.273 26 C 0.048 3.952 27 N -0.288 5.288 28 H 0.082 0.918 29 H 0.099 0.901 30 H 0.073 0.927 31 H 0.070 0.930 32 H 0.078 0.922 33 H 0.080 0.920 34 H 0.127 0.873 35 H 0.125 0.875 36 H 0.066 0.934 37 H 0.066 0.934 38 H 0.060 0.940 39 H 0.060 0.940 40 H 0.019 0.981 41 H 0.019 0.981 42 H 0.262 0.738 43 H 0.170 0.830 44 H 0.148 0.852 45 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.817 -0.828 19.185 32.983 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.042 3.958 3 H 0.148 0.852 4 C 0.294 3.706 5 O -0.383 6.383 6 N -0.334 5.334 7 C -0.071 4.071 8 C -0.001 4.001 9 C 0.279 3.721 10 O -0.392 6.392 11 O -0.273 6.273 12 C -0.003 4.003 13 C -0.146 4.146 14 C -0.013 4.013 15 C -0.560 4.560 16 H 0.075 0.925 17 C -0.145 4.145 18 N -0.534 5.534 19 Si 0.724 3.276 20 H -0.202 1.202 21 H -0.213 1.213 22 H -0.202 1.202 23 N -0.140 5.140 24 C -0.080 4.080 25 C -0.302 4.302 26 C -0.139 4.139 27 N -0.108 5.108 28 H 0.101 0.899 29 H 0.117 0.883 30 H 0.092 0.908 31 H 0.089 0.911 32 H 0.096 0.904 33 H 0.099 0.901 34 H 0.144 0.856 35 H 0.143 0.857 36 H 0.085 0.915 37 H 0.084 0.916 38 H 0.079 0.921 39 H 0.079 0.921 40 H 0.037 0.963 41 H 0.038 0.962 42 H 0.072 0.928 43 H 0.187 0.813 44 H 0.166 0.834 45 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges -25.606 0.095 18.695 31.704 hybrid contribution 0.389 -0.910 -0.486 1.102 sum -25.217 -0.816 18.209 31.115 Atomic orbital electron populations 1.22442 0.90407 1.04704 1.05556 1.20998 0.96170 0.97739 0.80933 0.85171 1.20821 0.80375 0.84969 0.84442 1.90799 1.35852 1.25820 1.85853 1.47394 1.51112 1.30245 1.04655 1.22143 0.93899 0.86695 1.04394 1.20926 0.91587 0.99157 0.88382 1.24080 0.87681 0.81436 0.78890 1.90669 1.66898 1.28772 1.52822 1.86477 1.36527 1.60546 1.43765 1.23519 0.79900 0.97439 0.99459 1.21770 0.99405 1.00257 0.93186 1.19050 0.89298 0.96095 0.96857 1.21128 1.04922 1.18724 1.11264 0.92457 1.25042 0.96940 0.95115 0.97424 1.69957 1.15265 1.27685 1.40450 0.86589 0.78217 0.79650 0.83140 1.20185 1.21259 1.20158 1.48183 1.19624 1.24771 1.21437 1.22397 0.99941 0.90697 0.94955 1.21481 0.99257 1.06146 1.03319 1.23921 0.99073 0.93985 0.96929 1.77435 1.01470 1.24628 1.07221 0.89899 0.88251 0.90781 0.91142 0.90370 0.90118 0.85566 0.85686 0.91542 0.91557 0.92090 0.92109 0.96264 0.96239 0.92817 0.81324 0.83449 0.79918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.66 8.47 37.16 0.31 -0.34 16 2 C 0.15 1.28 2.93 -69.08 -0.20 1.08 16 3 H 0.13 1.06 7.41 -51.93 -0.38 0.68 16 4 C 0.51 5.88 7.15 -10.98 -0.08 5.81 16 5 O -0.51 -8.33 15.99 5.56 0.09 -8.24 16 6 N -0.60 -5.46 2.36 -182.95 -0.43 -5.90 16 7 C 0.07 0.33 8.80 59.85 0.53 0.86 16 8 C 0.12 1.24 6.00 -5.19 -0.03 1.20 16 9 C 0.44 6.68 8.03 36.01 0.29 6.97 16 10 O -0.50 -9.27 16.18 -18.75 -0.30 -9.57 16 11 O -0.36 -6.03 10.22 -39.24 -0.40 -6.43 16 12 C 0.07 1.33 5.47 37.15 0.20 1.54 16 13 C -0.11 -2.30 5.53 -26.73 -0.15 -2.45 16 14 C 0.02 0.63 4.97 -27.88 -0.14 0.49 16 15 C -0.52 -14.89 9.11 -34.44 -0.31 -15.21 16 16 H 0.06 1.57 7.74 -52.49 -0.41 1.17 16 17 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 18 N -0.89 -27.17 13.29 55.43 0.74 -26.43 16 19 Si 0.90 21.78 29.54 -169.99 -5.02 16.76 16 20 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 21 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16 22 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 23 N -0.36 -4.02 3.02 -55.99 -0.17 -4.19 16 24 C 0.07 0.61 10.57 -17.23 -0.18 0.43 16 25 C -0.27 -2.56 10.80 -40.01 -0.43 -3.00 16 26 C 0.05 0.52 12.03 -17.36 -0.21 0.31 16 27 N -0.29 -3.91 12.58 30.63 0.39 -3.52 16 28 H 0.08 0.25 8.14 -51.93 -0.42 -0.17 16 29 H 0.10 0.16 4.51 -51.93 -0.23 -0.07 16 30 H 0.07 0.26 7.15 -51.93 -0.37 -0.11 16 31 H 0.07 0.11 6.95 -51.93 -0.36 -0.25 16 32 H 0.08 0.29 6.01 -51.93 -0.31 -0.02 16 33 H 0.08 0.40 8.07 -51.93 -0.42 -0.02 16 34 H 0.13 1.29 7.41 -51.93 -0.38 0.91 16 35 H 0.13 0.74 8.07 -51.93 -0.42 0.32 16 36 H 0.07 1.26 8.13 -51.93 -0.42 0.83 16 37 H 0.07 1.33 8.13 -51.93 -0.42 0.91 16 38 H 0.06 1.28 8.14 -51.93 -0.42 0.85 16 39 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 40 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 41 H 0.02 0.54 8.14 -51.93 -0.42 0.11 16 42 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 43 H 0.17 1.00 7.26 -52.49 -0.38 0.62 16 44 H 0.15 1.00 8.06 -52.49 -0.42 0.58 16 45 H 0.18 1.41 8.06 -52.48 -0.42 0.99 16 LS Contribution 381.80 15.07 5.75 5.75 Total: -1.00 -39.51 381.80 -6.47 -45.99 By element: Atomic # 1 Polarization: 3.17 SS G_CDS: -6.61 Total: -3.44 kcal Atomic # 6 Polarization: -0.28 SS G_CDS: -0.50 Total: -0.78 kcal Atomic # 7 Polarization: -40.56 SS G_CDS: 0.52 Total: -40.04 kcal Atomic # 8 Polarization: -23.63 SS G_CDS: -0.62 Total: -24.24 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -39.51 -6.47 -45.99 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000920547157.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.892 kcal (2) G-P(sol) polarization free energy of solvation -39.511 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.619 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.475 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.986 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.094 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds