Wall clock time and date at job start Tue Mar 31 2020 14:28:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09004 * 109.47214 * 2 1 4 4 C 1.50706 * 109.46763 * 240.00605 * 2 1 3 5 5 O 1.21281 * 119.99699 * 239.99570 * 4 2 1 6 6 N 1.34773 * 120.00080 * 60.00061 * 4 2 1 7 7 C 1.46499 * 120.00036 * 359.72107 * 6 4 2 8 8 C 1.46506 * 119.99969 * 180.02562 * 6 4 2 9 9 C 1.50703 * 109.46877 * 269.72057 * 8 6 4 10 10 O 1.20827 * 119.99774 * 0.02562 * 9 8 6 11 11 O 1.34222 * 119.99956 * 179.97438 * 9 8 6 12 12 C 1.45206 * 117.00281 * 180.02562 * 11 9 8 13 13 C 1.52993 * 109.47133 * 180.02562 * 12 11 9 14 14 C 1.53008 * 109.47033 * 180.02562 * 13 12 11 15 15 C 1.50700 * 109.46931 * 180.02562 * 14 13 12 16 16 H 1.07997 * 120.00539 * 359.97438 * 15 14 13 17 17 C 1.37880 * 119.99696 * 179.97438 * 15 14 13 18 18 N 1.31520 * 120.00015 * 359.97438 * 17 15 14 19 19 Si 1.86794 * 120.00049 * 180.02562 * 17 15 14 20 20 H 1.48499 * 109.47403 * 59.99863 * 19 17 15 21 21 H 1.48506 * 109.47275 * 179.97438 * 19 17 15 22 22 H 1.48501 * 109.46957 * 299.99447 * 19 17 15 23 23 N 1.46500 * 109.47277 * 120.00513 * 2 1 3 24 24 C 1.34940 * 126.03723 * 35.00037 * 23 2 1 25 25 C 1.35318 * 107.74670 * 179.97438 * 24 23 2 26 26 C 1.39878 * 107.91661 * 359.97438 * 25 24 23 27 27 N 1.30830 * 108.20404 * 359.74110 * 26 25 24 28 28 H 1.09002 * 109.46848 * 299.99518 * 1 2 3 29 29 H 1.09000 * 109.47019 * 59.99173 * 1 2 3 30 30 H 1.08995 * 109.46910 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47269 * 270.27384 * 7 6 4 32 32 H 1.08994 * 109.47173 * 30.28203 * 7 6 4 33 33 H 1.09005 * 109.47077 * 150.28374 * 7 6 4 34 34 H 1.09000 * 109.46803 * 29.71536 * 8 6 4 35 35 H 1.09000 * 109.47214 * 149.72329 * 8 6 4 36 36 H 1.08998 * 109.46517 * 300.00397 * 12 11 9 37 37 H 1.09006 * 109.46368 * 60.00052 * 12 11 9 38 38 H 1.09003 * 109.47422 * 300.00001 * 13 12 11 39 39 H 1.08998 * 109.47806 * 60.00302 * 13 12 11 40 40 H 1.09003 * 109.46643 * 300.00020 * 14 13 12 41 41 H 1.08995 * 109.47176 * 59.99787 * 14 13 12 42 42 H 0.96997 * 120.00380 * 180.02562 * 18 17 15 43 43 H 1.08001 * 126.12703 * 359.95401 * 24 23 2 44 44 H 1.07997 * 126.04431 * 179.97438 * 25 24 23 45 45 H 1.08003 * 125.89426 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2306 5 8 2.7296 -1.6964 -1.1194 6 7 1.7067 -0.2497 -2.4546 7 6 0.8595 0.9378 -2.5889 8 6 2.1945 -0.9406 -3.6509 9 6 3.5190 -0.3530 -4.0653 10 8 4.0056 0.5498 -3.4266 11 8 4.1584 -0.8333 -5.1433 12 6 5.4298 -0.2199 -5.4833 13 6 6.0037 -0.8939 -6.7311 14 6 7.3437 -0.2479 -7.0891 15 6 7.9087 -0.9113 -8.3186 16 1 7.3665 -1.7137 -8.7967 17 6 9.1178 -0.4939 -8.8331 18 7 9.7779 0.4836 -8.2512 19 14 9.8178 -1.3157 -10.3576 20 1 8.8702 -1.1499 -11.4887 21 1 11.1179 -0.6880 -10.7056 22 1 10.0218 -2.7622 -10.0906 23 7 2.0184 -0.6907 1.1961 24 6 1.4404 -1.7560 1.7893 25 6 2.1969 -2.0932 2.8593 26 6 3.2747 -1.2037 2.9218 27 7 3.1719 -0.3662 1.9219 28 1 -0.3633 0.5138 0.8901 29 1 -0.3633 0.5140 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 -0.1874 0.6358 -2.6194 32 1 1.0224 1.5985 -1.7375 33 1 1.1130 1.4628 -3.5100 34 1 2.3200 -2.0011 -3.4322 35 1 1.4741 -0.8191 -4.4598 36 1 5.2798 0.8416 -5.6804 37 1 6.1250 -0.3405 -4.6524 38 1 6.1536 -1.9555 -6.5344 39 1 5.3084 -0.7730 -7.5618 40 1 7.1942 0.8138 -7.2857 41 1 8.0389 -0.3692 -6.2584 42 1 10.6283 0.7776 -8.6134 43 1 0.5357 -2.2507 1.4678 44 1 2.0030 -2.9054 3.5441 45 1 4.0589 -1.2103 3.6643 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000920547157.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:28:55 Heat of formation + Delta-G solvation = -59.606766 kcal Electronic energy + Delta-G solvation = -26735.357267 eV Core-core repulsion = 22754.544930 eV Total energy + Delta-G solvation = -3980.812337 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.43052 -41.75426 -40.72918 -38.02364 -36.83105 -35.98214 -35.64752 -33.74944 -31.40994 -30.92647 -29.84514 -28.75631 -27.87949 -25.69023 -25.06449 -23.01691 -22.23345 -22.03304 -21.67290 -20.40081 -19.03744 -18.64099 -18.53478 -18.44136 -17.73424 -17.49868 -17.03485 -16.51667 -16.19194 -15.89310 -15.50152 -15.40431 -14.83452 -14.63602 -14.51481 -14.38926 -14.09499 -14.05869 -13.77671 -13.72669 -13.60916 -13.43917 -13.14972 -12.81312 -12.78025 -12.56066 -12.50813 -12.44955 -12.13148 -11.95697 -11.66335 -11.53685 -11.48548 -11.33048 -11.29235 -10.59802 -10.43111 -10.05973 -9.55336 -8.24288 -6.36572 0.77345 1.02084 1.10879 1.33772 1.39719 1.43484 1.51361 1.64968 1.94898 2.01255 2.39607 3.09286 3.13642 3.49182 3.54926 3.71393 3.90582 3.94175 3.98724 4.03961 4.10137 4.11356 4.25257 4.33279 4.50669 4.58773 4.67378 4.70369 4.73467 4.79015 4.83290 4.87169 5.02444 5.07269 5.12338 5.13762 5.35357 5.46516 5.58257 5.68898 5.76135 5.92607 6.12217 6.15131 6.56130 6.72953 6.78807 6.79785 7.33085 8.87868 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.021922 B = 0.002017 C = 0.001920 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1276.936368 B =13876.305002 C =14583.277875 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.144 3.856 3 H 0.129 0.871 4 C 0.502 3.498 5 O -0.569 6.569 6 N -0.594 5.594 7 C 0.058 3.942 8 C 0.130 3.870 9 C 0.434 3.566 10 O -0.541 6.541 11 O -0.355 6.355 12 C 0.080 3.920 13 C -0.093 4.093 14 C 0.025 3.975 15 C -0.544 4.544 16 H 0.067 0.933 17 C -0.004 4.004 18 N -0.935 5.935 19 Si 0.972 3.028 20 H -0.263 1.263 21 H -0.284 1.284 22 H -0.266 1.266 23 N -0.367 5.367 24 C 0.064 3.936 25 C -0.284 4.284 26 C 0.037 3.963 27 N -0.347 5.347 28 H 0.093 0.907 29 H 0.126 0.874 30 H 0.081 0.919 31 H 0.114 0.886 32 H 0.086 0.914 33 H 0.080 0.920 34 H 0.126 0.874 35 H 0.177 0.823 36 H 0.066 0.934 37 H 0.049 0.951 38 H 0.064 0.936 39 H 0.074 0.926 40 H -0.002 1.002 41 H -0.009 1.009 42 H 0.265 0.735 43 H 0.203 0.797 44 H 0.172 0.828 45 H 0.202 0.798 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.952 -1.722 18.346 35.167 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.038 3.962 3 H 0.146 0.854 4 C 0.289 3.711 5 O -0.447 6.447 6 N -0.327 5.327 7 C -0.082 4.082 8 C 0.005 3.995 9 C 0.277 3.723 10 O -0.431 6.431 11 O -0.271 6.271 12 C 0.006 3.994 13 C -0.130 4.130 14 C -0.012 4.012 15 C -0.582 4.582 16 H 0.085 0.915 17 C -0.201 4.201 18 N -0.575 5.575 19 Si 0.796 3.204 20 H -0.187 1.187 21 H -0.209 1.209 22 H -0.191 1.191 23 N -0.150 5.150 24 C -0.081 4.081 25 C -0.313 4.313 26 C -0.149 4.149 27 N -0.167 5.167 28 H 0.112 0.888 29 H 0.144 0.856 30 H 0.100 0.900 31 H 0.133 0.867 32 H 0.105 0.895 33 H 0.099 0.901 34 H 0.143 0.857 35 H 0.194 0.806 36 H 0.084 0.916 37 H 0.067 0.933 38 H 0.083 0.917 39 H 0.093 0.907 40 H 0.016 0.984 41 H 0.009 0.991 42 H 0.074 0.926 43 H 0.220 0.780 44 H 0.189 0.811 45 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges -28.798 -0.773 17.849 33.890 hybrid contribution 1.328 -0.591 -0.172 1.463 sum -27.471 -1.364 17.677 32.695 Atomic orbital electron populations 1.22500 0.86286 1.05813 1.07408 1.21317 0.99147 0.96739 0.78965 0.85361 1.21447 0.79435 0.84349 0.85867 1.90764 1.38578 1.28568 1.86822 1.47600 1.50470 1.31004 1.03654 1.22561 0.95402 0.85370 1.04895 1.21211 0.89528 0.98600 0.90144 1.25332 0.88790 0.80734 0.77493 1.90658 1.68082 1.30702 1.53660 1.86471 1.35287 1.60434 1.44902 1.23093 0.81029 0.97272 0.97969 1.21459 0.97116 0.99893 0.94552 1.18937 0.91467 0.95244 0.95522 1.21587 1.05504 1.19101 1.11993 0.91470 1.26068 0.97366 0.95673 1.01029 1.70104 1.15771 1.29275 1.42331 0.85396 0.77481 0.78699 0.78851 1.18738 1.20940 1.19115 1.48439 1.19143 1.25507 1.21899 1.23029 1.00682 0.89930 0.94438 1.21879 0.98809 1.06573 1.04037 1.24409 0.99974 0.93817 0.96725 1.77335 1.03629 1.26820 1.08963 0.88778 0.85592 0.89996 0.86748 0.89498 0.90093 0.85664 0.80589 0.91573 0.93265 0.91748 0.90732 0.98359 0.99064 0.92650 0.78026 0.81079 0.78114 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.72 8.47 71.98 0.61 -0.11 16 2 C 0.14 2.34 2.93 44.25 0.13 2.47 16 3 H 0.13 2.05 7.41 -2.39 -0.02 2.04 16 4 C 0.50 11.26 7.15 87.66 0.63 11.89 16 5 O -0.57 -18.97 15.99 -3.03 -0.05 -19.02 16 6 N -0.59 -9.64 2.36 -851.11 -2.01 -11.65 16 7 C 0.06 0.35 8.80 127.77 1.12 1.48 16 8 C 0.13 2.32 6.00 85.63 0.51 2.83 16 9 C 0.43 13.00 8.03 71.24 0.57 13.57 16 10 O -0.54 -20.25 16.18 21.96 0.36 -19.89 16 11 O -0.36 -11.81 10.22 -51.34 -0.52 -12.34 16 12 C 0.08 3.13 5.47 71.98 0.39 3.52 16 13 C -0.09 -3.95 5.53 30.59 0.17 -3.78 16 14 C 0.03 1.38 4.97 29.85 0.15 1.53 16 15 C -0.54 -31.28 9.11 25.60 0.23 -31.04 16 16 H 0.07 3.64 7.74 -2.91 -0.02 3.62 16 17 C 0.00 -0.21 5.46 84.65 0.46 0.25 16 18 N -0.93 -57.93 13.29 21.45 0.28 -57.65 16 19 Si 0.97 44.51 29.54 68.60 2.03 46.54 16 20 H -0.26 -11.40 7.11 99.48 0.71 -10.69 16 21 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 22 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 23 N -0.37 -8.17 3.02 -331.05 -1.00 -9.17 16 24 C 0.06 1.13 10.57 83.54 0.88 2.01 16 25 C -0.28 -5.14 10.80 21.99 0.24 -4.91 16 26 C 0.04 0.82 12.03 85.24 1.03 1.84 16 27 N -0.35 -9.79 12.58 -57.02 -0.72 -10.51 16 28 H 0.09 0.27 8.14 -2.39 -0.02 0.25 16 29 H 0.13 -0.16 4.51 -2.39 -0.01 -0.18 16 30 H 0.08 0.28 7.15 -2.39 -0.02 0.26 16 31 H 0.11 -0.26 6.95 -2.39 -0.02 -0.27 16 32 H 0.09 0.40 6.01 -2.39 -0.01 0.39 16 33 H 0.08 0.55 8.07 -2.38 -0.02 0.53 16 34 H 0.13 2.39 7.41 -2.39 -0.02 2.37 16 35 H 0.18 1.33 8.07 -2.39 -0.02 1.31 16 36 H 0.07 2.57 8.13 -2.39 -0.02 2.55 16 37 H 0.05 2.07 8.13 -2.38 -0.02 2.05 16 38 H 0.06 2.69 8.14 -2.39 -0.02 2.67 16 39 H 0.07 2.97 8.14 -2.39 -0.02 2.95 16 40 H 0.00 -0.11 8.14 -2.39 -0.02 -0.13 16 41 H -0.01 -0.53 8.14 -2.39 -0.02 -0.55 16 42 H 0.26 15.41 8.31 -92.71 -0.77 14.64 16 43 H 0.20 1.87 7.26 -2.91 -0.02 1.85 16 44 H 0.17 2.06 8.06 -2.91 -0.02 2.04 16 45 H 0.20 3.22 8.06 -2.91 -0.02 3.20 16 Total: -1.00 -90.79 381.80 6.49 -84.30 By element: Atomic # 1 Polarization: 6.84 SS G_CDS: 0.99 Total: 7.83 kcal Atomic # 6 Polarization: -5.58 SS G_CDS: 7.13 Total: 1.55 kcal Atomic # 7 Polarization: -85.53 SS G_CDS: -3.44 Total: -88.97 kcal Atomic # 8 Polarization: -51.03 SS G_CDS: -0.22 Total: -51.25 kcal Atomic # 14 Polarization: 44.51 SS G_CDS: 2.03 Total: 46.54 kcal Total: -90.79 6.49 -84.30 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000920547157.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.694 kcal (2) G-P(sol) polarization free energy of solvation -90.786 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.093 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.486 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.300 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.607 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds