Wall clock time and date at job start Tue Mar 31 2020 14:28:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.47050 * 2 1 4 4 C 1.50699 * 109.46866 * 119.99952 * 2 1 3 5 5 O 1.21278 * 120.00240 * 120.00385 * 4 2 1 6 6 N 1.34780 * 120.00249 * 300.00184 * 4 2 1 7 7 C 1.46502 * 119.99699 * 359.97438 * 6 4 2 8 8 C 1.46500 * 120.00188 * 180.02562 * 6 4 2 9 9 C 1.50698 * 109.47062 * 90.00004 * 8 6 4 10 10 O 1.20829 * 119.99996 * 359.97438 * 9 8 6 11 11 O 1.34225 * 119.99857 * 180.02562 * 9 8 6 12 12 C 1.45203 * 117.00137 * 179.97438 * 11 9 8 13 13 C 1.53000 * 109.47351 * 179.97438 * 12 11 9 14 14 C 1.53001 * 109.47000 * 180.02562 * 13 12 11 15 15 C 1.50700 * 109.46984 * 180.02562 * 14 13 12 16 16 H 1.08004 * 119.99937 * 359.97438 * 15 14 13 17 17 C 1.37882 * 120.00332 * 180.02562 * 15 14 13 18 18 N 1.31512 * 119.99502 * 359.97438 * 17 15 14 19 19 Si 1.86793 * 120.00128 * 179.97438 * 17 15 14 20 20 H 1.48497 * 109.47242 * 59.99939 * 19 17 15 21 21 H 1.48498 * 109.46923 * 179.97438 * 19 17 15 22 22 H 1.48495 * 109.47307 * 299.99659 * 19 17 15 23 23 N 1.46492 * 109.47363 * 239.99860 * 2 1 3 24 24 C 1.34949 * 126.03579 * 325.00408 * 23 2 1 25 25 C 1.35318 * 107.74539 * 179.97438 * 24 23 2 26 26 C 1.39867 * 107.92181 * 359.97438 * 25 24 23 27 27 N 1.30841 * 108.20183 * 359.74201 * 26 25 24 28 28 H 1.09001 * 109.46801 * 300.00112 * 1 2 3 29 29 H 1.09001 * 109.46998 * 59.99708 * 1 2 3 30 30 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.47386 * 90.00307 * 7 6 4 32 32 H 1.08998 * 109.47238 * 210.00186 * 7 6 4 33 33 H 1.09002 * 109.47312 * 329.99896 * 7 6 4 34 34 H 1.08999 * 109.46628 * 209.99856 * 8 6 4 35 35 H 1.08991 * 109.47048 * 329.99991 * 8 6 4 36 36 H 1.08996 * 109.46951 * 299.99982 * 12 11 9 37 37 H 1.09004 * 109.46957 * 59.99887 * 12 11 9 38 38 H 1.09002 * 109.46958 * 300.00283 * 13 12 11 39 39 H 1.09004 * 109.46970 * 60.00155 * 13 12 11 40 40 H 1.08996 * 109.47080 * 300.00107 * 14 13 12 41 41 H 1.09004 * 109.47178 * 60.00227 * 14 13 12 42 42 H 0.96997 * 119.99929 * 180.02562 * 18 17 15 43 43 H 1.07994 * 126.12773 * 359.97438 * 24 23 2 44 44 H 1.08000 * 126.03884 * 179.97438 * 25 24 23 45 45 H 1.07996 * 125.90295 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 8 2.7296 -1.6964 1.1193 6 7 1.7067 -0.2500 2.4546 7 6 0.8649 0.9415 2.5890 8 6 2.1954 -0.9403 3.6508 9 6 3.5228 -0.3562 4.0608 10 8 4.0107 0.5440 3.4192 11 8 4.1634 -0.8367 5.1379 12 6 5.4376 -0.2266 5.4736 13 6 6.0127 -0.9002 6.7212 14 6 7.3550 -0.2570 7.0752 15 6 7.9217 -0.9209 8.3037 16 1 7.3785 -1.7213 8.7841 17 6 9.1331 -0.5059 8.8150 18 7 9.7942 0.4691 8.2302 19 14 9.8351 -1.3283 10.3381 20 1 10.0351 -2.7754 10.0716 21 1 11.1380 -0.7041 10.6816 22 1 8.8907 -1.1596 11.4716 23 7 2.0184 -0.6906 -1.1961 24 6 1.4403 -1.7559 -1.7894 25 6 2.1963 -2.0923 -2.8601 26 6 3.2730 -1.2018 -2.9236 27 7 3.1642 -0.3575 -1.9300 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.1832 0.6441 2.6221 32 1 1.1227 1.4667 3.5086 33 1 1.0288 1.6003 1.7362 34 1 1.4775 -0.8150 4.4613 35 1 2.3169 -2.0014 3.4337 36 1 6.1303 -0.3508 4.6413 37 1 5.2915 0.8357 5.6694 38 1 5.3198 -0.7757 7.5534 39 1 6.1587 -1.9626 6.5258 40 1 8.0480 -0.3811 6.2432 41 1 7.2085 0.8053 7.2707 42 1 10.6466 0.7609 8.5896 43 1 0.5362 -2.2511 -1.4674 44 1 2.0025 -2.9048 -3.5447 45 1 4.0566 -1.2075 -3.6668 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000920547159.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:28:58 Heat of formation + Delta-G solvation = -59.678511 kcal Electronic energy + Delta-G solvation = -26736.930740 eV Core-core repulsion = 22756.115292 eV Total energy + Delta-G solvation = -3980.815448 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.43054 -41.75488 -40.72893 -38.02375 -36.83012 -35.98240 -35.64843 -33.75022 -31.40877 -30.92653 -29.84610 -28.75685 -27.87629 -25.69305 -25.06586 -23.01690 -22.23342 -22.03454 -21.67459 -20.39909 -19.03802 -18.64020 -18.53427 -18.44135 -17.73438 -17.49815 -17.03393 -16.51713 -16.19345 -15.89273 -15.50214 -15.40423 -14.83817 -14.63735 -14.51468 -14.38641 -14.09409 -14.05878 -13.77641 -13.72572 -13.60872 -13.43980 -13.14999 -12.81329 -12.78076 -12.56090 -12.51231 -12.45030 -12.13148 -11.95752 -11.66639 -11.53731 -11.48546 -11.32992 -11.29155 -10.59843 -10.43011 -10.06012 -9.55404 -8.24309 -6.36557 0.77372 1.02040 1.10811 1.33478 1.39720 1.43507 1.51385 1.65175 1.94674 2.01372 2.39616 3.09309 3.13585 3.49186 3.54949 3.71234 3.90588 3.94186 3.98692 4.04025 4.10125 4.11316 4.25370 4.33298 4.50695 4.58725 4.67387 4.70304 4.73456 4.79010 4.83275 4.87160 5.02435 5.07264 5.12313 5.13720 5.35351 5.46507 5.58255 5.68864 5.76133 5.92538 6.12173 6.15151 6.56083 6.72860 6.78793 6.79765 7.33089 8.87874 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.021885 B = 0.002019 C = 0.001921 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1279.114539 B =13866.860172 C =14575.710515 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.144 3.856 3 H 0.129 0.871 4 C 0.502 3.498 5 O -0.569 6.569 6 N -0.594 5.594 7 C 0.058 3.942 8 C 0.130 3.870 9 C 0.433 3.567 10 O -0.541 6.541 11 O -0.355 6.355 12 C 0.080 3.920 13 C -0.093 4.093 14 C 0.025 3.975 15 C -0.544 4.544 16 H 0.067 0.933 17 C -0.004 4.004 18 N -0.935 5.935 19 Si 0.972 3.028 20 H -0.266 1.266 21 H -0.284 1.284 22 H -0.263 1.263 23 N -0.367 5.367 24 C 0.064 3.936 25 C -0.284 4.284 26 C 0.037 3.963 27 N -0.347 5.347 28 H 0.126 0.874 29 H 0.093 0.907 30 H 0.081 0.919 31 H 0.115 0.885 32 H 0.080 0.920 33 H 0.086 0.914 34 H 0.177 0.823 35 H 0.126 0.874 36 H 0.049 0.951 37 H 0.066 0.934 38 H 0.074 0.926 39 H 0.064 0.936 40 H -0.009 1.009 41 H -0.002 1.002 42 H 0.265 0.735 43 H 0.203 0.797 44 H 0.172 0.828 45 H 0.202 0.798 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.976 -1.681 -18.267 35.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.038 3.962 3 H 0.146 0.854 4 C 0.289 3.711 5 O -0.447 6.447 6 N -0.327 5.327 7 C -0.082 4.082 8 C 0.005 3.995 9 C 0.276 3.724 10 O -0.431 6.431 11 O -0.271 6.271 12 C 0.006 3.994 13 C -0.130 4.130 14 C -0.012 4.012 15 C -0.582 4.582 16 H 0.085 0.915 17 C -0.201 4.201 18 N -0.575 5.575 19 Si 0.796 3.204 20 H -0.191 1.191 21 H -0.209 1.209 22 H -0.187 1.187 23 N -0.150 5.150 24 C -0.081 4.081 25 C -0.313 4.313 26 C -0.149 4.149 27 N -0.167 5.167 28 H 0.144 0.856 29 H 0.112 0.888 30 H 0.100 0.900 31 H 0.133 0.867 32 H 0.099 0.901 33 H 0.105 0.895 34 H 0.194 0.806 35 H 0.143 0.857 36 H 0.067 0.933 37 H 0.084 0.916 38 H 0.093 0.907 39 H 0.083 0.917 40 H 0.009 0.991 41 H 0.016 0.984 42 H 0.073 0.927 43 H 0.220 0.780 44 H 0.189 0.811 45 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges -28.828 -0.729 -17.776 33.876 hybrid contribution 1.332 -0.592 0.169 1.468 sum -27.496 -1.320 -17.608 32.677 Atomic orbital electron populations 1.22499 0.86303 1.05807 1.07390 1.21308 0.99138 0.96744 0.78978 0.85360 1.21438 0.79417 0.84359 0.85862 1.90763 1.38548 1.28580 1.86822 1.47609 1.50611 1.30848 1.03651 1.22558 0.95543 0.85243 1.04882 1.21210 0.89426 0.98664 0.90176 1.25338 0.88871 0.80664 0.77486 1.90659 1.68172 1.30798 1.53484 1.86471 1.35077 1.60567 1.44972 1.23093 0.80944 0.97320 0.98011 1.21459 0.97095 0.99898 0.94563 1.18936 0.91454 0.95242 0.95538 1.21589 1.05334 1.19229 1.12039 0.91473 1.26067 0.97384 0.95671 1.01013 1.70102 1.15616 1.29426 1.42330 0.85394 0.77472 0.78699 0.78857 1.19127 1.20940 1.18727 1.48426 1.19601 1.25316 1.21657 1.23030 1.00618 0.90065 0.94363 1.21876 0.98696 1.06671 1.04058 1.24407 0.99945 0.93696 0.96879 1.77337 1.04026 1.26492 1.08891 0.85608 0.88794 0.89995 0.86738 0.90104 0.89517 0.80579 0.85653 0.93268 0.91578 0.90738 0.91741 0.99070 0.98355 0.92651 0.78030 0.81078 0.78113 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.72 8.47 71.98 0.61 -0.11 16 2 C 0.14 2.35 2.93 44.25 0.13 2.48 16 3 H 0.13 2.06 7.40 -2.39 -0.02 2.04 16 4 C 0.50 11.27 7.14 87.66 0.63 11.89 16 5 O -0.57 -18.97 15.99 -3.02 -0.05 -19.01 16 6 N -0.59 -9.62 2.36 -851.15 -2.01 -11.63 16 7 C 0.06 0.35 8.80 127.77 1.12 1.48 16 8 C 0.13 2.31 6.00 85.63 0.51 2.83 16 9 C 0.43 12.99 8.02 71.24 0.57 13.56 16 10 O -0.54 -20.25 16.18 21.95 0.36 -19.90 16 11 O -0.36 -11.81 10.22 -51.37 -0.52 -12.33 16 12 C 0.08 3.13 5.47 71.98 0.39 3.52 16 13 C -0.09 -3.95 5.53 30.59 0.17 -3.78 16 14 C 0.03 1.38 4.97 29.85 0.15 1.53 16 15 C -0.54 -31.28 9.11 25.60 0.23 -31.05 16 16 H 0.07 3.64 7.74 -2.91 -0.02 3.62 16 17 C 0.00 -0.21 5.46 84.66 0.46 0.26 16 18 N -0.93 -57.93 13.29 21.45 0.28 -57.64 16 19 Si 0.97 44.51 29.54 68.60 2.03 46.54 16 20 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 21 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 22 H -0.26 -11.39 7.11 99.48 0.71 -10.68 16 23 N -0.37 -8.18 3.02 -331.07 -1.00 -9.18 16 24 C 0.06 1.13 10.57 83.54 0.88 2.01 16 25 C -0.28 -5.15 10.80 21.99 0.24 -4.91 16 26 C 0.04 0.81 12.03 85.23 1.02 1.84 16 27 N -0.35 -9.78 12.58 -57.03 -0.72 -10.49 16 28 H 0.13 -0.16 4.53 -2.39 -0.01 -0.17 16 29 H 0.09 0.27 8.14 -2.39 -0.02 0.25 16 30 H 0.08 0.28 7.16 -2.39 -0.02 0.26 16 31 H 0.11 -0.25 6.95 -2.39 -0.02 -0.27 16 32 H 0.08 0.55 8.07 -2.39 -0.02 0.53 16 33 H 0.09 0.40 6.01 -2.39 -0.01 0.39 16 34 H 0.18 1.33 8.07 -2.39 -0.02 1.31 16 35 H 0.13 2.38 7.42 -2.39 -0.02 2.37 16 36 H 0.05 2.07 8.13 -2.39 -0.02 2.05 16 37 H 0.07 2.56 8.13 -2.39 -0.02 2.54 16 38 H 0.07 2.97 8.14 -2.39 -0.02 2.95 16 39 H 0.06 2.69 8.14 -2.39 -0.02 2.67 16 40 H -0.01 -0.54 8.14 -2.39 -0.02 -0.56 16 41 H 0.00 -0.11 8.14 -2.39 -0.02 -0.13 16 42 H 0.26 15.40 8.31 -92.71 -0.77 14.63 16 43 H 0.20 1.88 7.26 -2.91 -0.02 1.86 16 44 H 0.17 2.06 8.06 -2.91 -0.02 2.04 16 45 H 0.20 3.23 8.06 -2.91 -0.02 3.20 16 Total: -1.00 -90.76 381.82 6.48 -84.28 By element: Atomic # 1 Polarization: 6.85 SS G_CDS: 0.99 Total: 7.84 kcal Atomic # 6 Polarization: -5.59 SS G_CDS: 7.13 Total: 1.54 kcal Atomic # 7 Polarization: -85.51 SS G_CDS: -3.44 Total: -88.96 kcal Atomic # 8 Polarization: -51.02 SS G_CDS: -0.22 Total: -51.24 kcal Atomic # 14 Polarization: 44.51 SS G_CDS: 2.03 Total: 46.54 kcal Total: -90.76 6.48 -84.28 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000920547159.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.597 kcal (2) G-P(sol) polarization free energy of solvation -90.761 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.163 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.485 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.276 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.679 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds