Wall clock time and date at job start Tue Mar 31 2020 14:49:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42892 * 109.47183 * 2 1 4 4 C 1.42898 * 114.00577 * 179.97438 * 3 2 1 5 5 C 1.52991 * 109.47726 * 179.97438 * 4 3 2 6 6 O 1.42904 * 109.46839 * 64.99999 * 5 4 3 7 7 C 1.42904 * 113.99836 * 179.97438 * 6 5 4 8 8 C 1.53003 * 109.46938 * 179.97438 * 7 6 5 9 9 N 1.46501 * 109.46703 * 65.00399 * 8 7 6 10 10 C 1.34784 * 119.99925 * 179.97438 * 9 8 7 11 11 O 1.21577 * 119.99799 * 0.02562 * 10 9 8 12 12 N 1.34773 * 120.00112 * 179.97438 * 10 9 8 13 13 C 1.39454 * 120.00224 * 184.82373 * 12 10 9 14 14 C 1.38644 * 119.64992 * 185.83266 * 13 12 10 15 15 C 1.40826 * 118.67290 * 179.72967 * 14 13 12 16 16 C 1.41542 * 120.99716 * 180.25442 * 15 14 13 17 17 H 1.08004 * 119.99848 * 146.64534 * 16 15 14 18 18 C 1.40029 * 119.99933 * 326.65259 * 16 15 14 19 19 N 1.30748 * 120.00210 * 168.30852 * 18 16 15 20 20 Si 1.86803 * 120.00247 * 348.30795 * 18 16 15 21 21 H 1.48500 * 109.46824 * 92.68469 * 20 18 16 22 22 H 1.48493 * 109.47301 * 212.69007 * 20 18 16 23 23 H 1.48502 * 109.46910 * 332.69018 * 20 18 16 24 24 C 1.41161 * 118.00609 * 0.27160 * 15 14 13 25 25 C 1.36598 * 119.12605 * 0.02562 * 24 15 14 26 26 N 1.32065 * 121.25890 * 0.02562 * 25 24 15 27 27 H 1.09003 * 109.47239 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47331 * 299.99866 * 1 2 3 29 29 H 1.08998 * 109.46726 * 60.00395 * 1 2 3 30 30 H 1.09001 * 109.47397 * 239.99349 * 2 1 3 31 31 H 1.09007 * 109.46913 * 119.99581 * 2 1 3 32 32 H 1.09007 * 109.47061 * 59.99496 * 4 3 2 33 33 H 1.09005 * 109.46673 * 300.00302 * 4 3 2 34 34 H 1.08998 * 109.47354 * 305.00290 * 5 4 3 35 35 H 1.08998 * 109.47391 * 184.99580 * 5 4 3 36 36 H 1.09000 * 109.46743 * 60.00654 * 7 6 5 37 37 H 1.08991 * 109.47370 * 299.99813 * 7 6 5 38 38 H 1.08998 * 109.47448 * 305.00303 * 8 7 6 39 39 H 1.09002 * 109.47115 * 185.00111 * 8 7 6 40 40 H 0.97001 * 120.00447 * 0.02562 * 9 8 7 41 41 H 0.97005 * 119.99704 * 4.83053 * 12 10 9 42 42 H 1.07996 * 120.66466 * 0.02562 * 14 13 12 43 43 H 0.96995 * 119.99798 * 179.97438 * 19 18 16 44 44 H 1.07998 * 120.43763 * 179.97438 * 24 15 14 45 45 H 1.08000 * 119.36777 * 179.97438 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.4308 1.4602 0.0006 5 6 3.8254 2.9383 -0.0001 6 8 3.3975 3.5460 1.2204 7 6 3.7192 4.9347 1.3223 8 6 3.2160 5.4778 2.6612 9 7 3.9438 4.8301 3.7554 10 6 3.6668 5.1545 5.0340 11 8 2.8127 5.9842 5.2792 12 7 4.3359 4.5583 6.0405 13 6 3.9814 4.8184 7.3639 14 6 4.7492 4.2984 8.3946 15 6 4.3757 4.5786 9.7232 16 6 5.1273 4.0774 10.8128 17 1 5.2154 4.6569 11.7200 18 6 5.7566 2.8304 10.7146 19 7 6.6308 2.4664 11.6162 20 14 5.3473 1.6867 9.2954 21 1 6.3044 1.9157 8.1834 22 1 5.4462 0.2770 9.7514 23 1 3.9658 1.9586 8.8233 24 6 3.2291 5.3742 9.9356 25 6 2.5317 5.8370 8.8562 26 7 2.9101 5.5537 7.6230 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.8934 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8901 32 1 3.8341 0.9764 -0.8892 33 1 3.8332 0.9767 0.8908 34 1 3.3499 3.4409 -0.8424 35 1 4.9082 3.0254 -0.0892 36 1 3.2418 5.4789 0.5074 37 1 4.7998 5.0627 1.2609 38 1 2.1506 5.2701 2.7604 39 1 3.3816 6.5544 2.7019 40 1 4.6255 4.1684 3.5597 41 1 5.0643 3.9483 5.8444 42 1 5.6191 3.6944 8.1828 43 1 7.0664 1.6025 11.5483 44 1 2.9070 5.6130 10.9384 45 1 1.6536 6.4457 9.0142 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000932162335.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:49:55 Heat of formation + Delta-G solvation = -82.683796 kcal Electronic energy + Delta-G solvation = -26465.256864 eV Core-core repulsion = 22483.443832 eV Total energy + Delta-G solvation = -3981.813032 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -39.97052 -38.91048 -38.29632 -37.63014 -34.78397 -34.14320 -33.72394 -32.15913 -31.25403 -30.28223 -29.07933 -27.99865 -25.95137 -23.14025 -23.08152 -22.92620 -22.30843 -21.51511 -20.09652 -18.31089 -17.72680 -17.46943 -17.23478 -16.46947 -16.08704 -15.93024 -15.42878 -15.27753 -15.07491 -14.63421 -14.47029 -14.17099 -13.95453 -13.70446 -13.36192 -13.16086 -13.06028 -12.90884 -12.86577 -12.48683 -12.20445 -11.83736 -11.77689 -11.57715 -11.44190 -11.24358 -10.96943 -10.80328 -10.63852 -10.04193 -10.00083 -9.93613 -9.84718 -9.66035 -9.34651 -8.84557 -8.15536 -7.86660 -7.20883 -6.99280 -4.69896 2.43526 2.66297 2.92758 3.03289 3.15036 3.26357 3.27526 3.32670 3.77545 3.92245 4.43092 4.55385 4.64096 4.68592 4.75749 4.77333 4.88974 4.91838 5.01115 5.03510 5.05988 5.09832 5.30172 5.42626 5.42972 5.57882 5.60331 5.70812 5.82013 5.84633 6.28391 6.39766 6.44654 6.59125 6.63142 6.80133 6.91628 6.98119 7.08869 7.23954 7.33395 7.69433 7.98228 8.25134 8.26861 8.47842 8.69769 9.05367 9.51282 10.02576 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.012518 B = 0.002667 C = 0.002420 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2236.188649 B =10495.021845 C =11566.167867 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.057 3.943 3 O -0.381 6.381 4 C 0.064 3.936 5 C 0.064 3.936 6 O -0.375 6.375 7 C 0.050 3.950 8 C 0.145 3.855 9 N -0.748 5.748 10 C 0.694 3.306 11 O -0.531 6.531 12 N -0.673 5.673 13 C 0.387 3.613 14 C -0.318 4.318 15 C 0.130 3.870 16 C -0.442 4.442 17 H 0.096 0.904 18 C 0.085 3.915 19 N -0.809 5.809 20 Si 0.915 3.085 21 H -0.271 1.271 22 H -0.291 1.291 23 H -0.245 1.245 24 C -0.270 4.270 25 C 0.129 3.871 26 N -0.551 5.551 27 H 0.070 0.930 28 H 0.065 0.935 29 H 0.061 0.939 30 H 0.045 0.955 31 H 0.049 0.951 32 H 0.062 0.938 33 H 0.058 0.942 34 H 0.058 0.942 35 H 0.064 0.936 36 H 0.066 0.934 37 H 0.055 0.945 38 H 0.075 0.925 39 H 0.080 0.920 40 H 0.394 0.606 41 H 0.404 0.596 42 H 0.108 0.892 43 H 0.286 0.714 44 H 0.110 0.890 45 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.287 -4.740 -24.391 24.952 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.020 4.020 3 O -0.300 6.300 4 C -0.013 4.013 5 C -0.013 4.013 6 O -0.294 6.294 7 C -0.027 4.027 8 C 0.021 3.979 9 N -0.407 5.407 10 C 0.393 3.607 11 O -0.402 6.402 12 N -0.321 5.321 13 C 0.158 3.842 14 C -0.344 4.344 15 C 0.122 3.878 16 C -0.472 4.472 17 H 0.113 0.887 18 C -0.134 4.134 19 N -0.434 5.434 20 Si 0.742 3.258 21 H -0.197 1.197 22 H -0.219 1.219 23 H -0.168 1.168 24 C -0.293 4.293 25 C -0.023 4.023 26 N -0.271 5.271 27 H 0.089 0.911 28 H 0.084 0.916 29 H 0.080 0.920 30 H 0.064 0.936 31 H 0.067 0.933 32 H 0.080 0.920 33 H 0.077 0.923 34 H 0.076 0.924 35 H 0.082 0.918 36 H 0.084 0.916 37 H 0.074 0.926 38 H 0.093 0.907 39 H 0.098 0.902 40 H 0.227 0.773 41 H 0.238 0.762 42 H 0.126 0.874 43 H 0.097 0.903 44 H 0.128 0.872 45 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -3.680 -3.702 -24.636 25.183 hybrid contribution 1.647 -1.753 -0.239 2.417 sum -2.033 -5.455 -24.875 25.547 Atomic orbital electron populations 1.21740 0.93632 1.02224 1.03318 1.22465 0.95831 0.83771 0.99913 1.87971 1.20375 1.26304 1.95373 1.22504 0.82403 0.95559 1.00844 1.22510 0.98213 0.92691 0.87884 1.88046 1.80949 1.22676 1.37748 1.22807 0.99516 0.82761 0.97577 1.21133 0.97376 0.96599 0.82820 1.45077 1.44148 1.47106 1.04324 1.16027 0.82328 0.82162 0.80162 1.91014 1.33181 1.33783 1.82246 1.42634 1.37114 1.48390 1.03935 1.17765 0.91370 0.93322 0.81720 1.21236 1.04994 1.15465 0.92734 1.17719 0.89633 0.89051 0.91413 1.19466 1.24235 1.02690 1.00825 0.88655 1.26141 0.91534 0.99020 0.96723 1.69613 1.18768 1.21483 1.33488 0.86246 0.81792 0.77377 0.80365 1.19747 1.21851 1.16840 1.21728 0.99243 1.09578 0.98771 1.21644 0.97523 0.95798 0.87314 1.67291 1.16251 1.20455 1.23063 0.91131 0.91556 0.91952 0.93642 0.93290 0.91977 0.92326 0.92420 0.91782 0.91563 0.92644 0.90716 0.90160 0.77302 0.76221 0.87403 0.90333 0.87154 0.85321 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.13 10.28 37.16 0.38 -0.75 16 2 C 0.06 0.46 6.66 37.16 0.25 0.71 16 3 O -0.38 -4.02 10.31 -40.08 -0.41 -4.44 16 4 C 0.06 0.50 6.32 37.15 0.23 0.74 16 5 C 0.06 0.48 6.32 37.15 0.23 0.72 16 6 O -0.37 -3.94 10.25 -40.08 -0.41 -4.35 16 7 C 0.05 0.43 6.07 37.16 0.23 0.65 16 8 C 0.15 1.71 6.06 -4.04 -0.02 1.69 16 9 N -0.75 -10.28 5.51 -65.22 -0.36 -10.64 16 10 C 0.69 13.23 8.51 -86.91 -0.74 12.49 16 11 O -0.53 -12.40 14.64 5.30 0.08 -12.32 16 12 N -0.67 -13.03 5.40 -15.86 -0.09 -13.12 16 13 C 0.39 9.15 7.40 -154.68 -1.15 8.00 16 14 C -0.32 -7.71 6.96 -38.45 -0.27 -7.97 16 15 C 0.13 3.33 5.09 -106.55 -0.54 2.79 16 16 C -0.44 -11.78 9.66 -37.65 -0.36 -12.14 16 17 H 0.10 2.65 8.06 -52.48 -0.42 2.22 16 18 C 0.09 2.19 5.48 -17.34 -0.10 2.10 16 19 N -0.81 -21.12 13.92 55.55 0.77 -20.35 16 20 Si 0.92 20.42 24.49 -169.99 -4.16 16.26 16 21 H -0.27 -5.66 6.71 56.52 0.38 -5.28 16 22 H -0.29 -6.27 7.11 56.52 0.40 -5.87 16 23 H -0.25 -5.77 6.70 56.52 0.38 -5.39 16 24 C -0.27 -6.40 9.85 -39.07 -0.38 -6.78 16 25 C 0.13 2.99 11.10 -18.04 -0.20 2.79 16 26 N -0.55 -13.79 7.90 -12.76 -0.10 -13.90 16 27 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 31 H 0.05 0.38 8.14 -51.92 -0.42 -0.04 16 32 H 0.06 0.34 8.14 -51.92 -0.42 -0.08 16 33 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 35 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 36 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 37 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 38 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 39 H 0.08 0.92 8.14 -51.93 -0.42 0.49 16 40 H 0.39 4.36 8.49 -40.82 -0.35 4.02 16 41 H 0.40 6.30 8.72 -40.82 -0.36 5.94 16 42 H 0.11 2.49 4.79 -52.49 -0.25 2.24 16 43 H 0.29 6.75 8.29 -40.82 -0.34 6.41 16 44 H 0.11 2.40 8.06 -52.49 -0.42 1.98 16 45 H 0.13 2.58 8.06 -52.49 -0.42 2.15 16 LS Contribution 379.01 15.07 5.71 5.71 Total: -1.00 -34.45 379.01 -8.31 -42.76 By element: Atomic # 1 Polarization: 16.26 SS G_CDS: -6.90 Total: 9.36 kcal Atomic # 6 Polarization: 7.47 SS G_CDS: -2.44 Total: 5.03 kcal Atomic # 7 Polarization: -58.23 SS G_CDS: 0.23 Total: -58.01 kcal Atomic # 8 Polarization: -20.37 SS G_CDS: -0.75 Total: -21.11 kcal Atomic # 14 Polarization: 20.42 SS G_CDS: -4.16 Total: 16.26 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -34.45 -8.31 -42.76 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932162335.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.925 kcal (2) G-P(sol) polarization free energy of solvation -34.452 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.377 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.306 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.759 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.684 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds