Wall clock time and date at job start Tue Mar 31 2020 14:49:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42892 * 109.47183 * 2 1 4 4 C 1.42898 * 114.00577 * 179.97438 * 3 2 1 5 5 C 1.52991 * 109.47726 * 179.97438 * 4 3 2 6 6 O 1.42904 * 109.46839 * 64.99999 * 5 4 3 7 7 C 1.42904 * 113.99836 * 179.97438 * 6 5 4 8 8 C 1.53003 * 109.46938 * 179.97438 * 7 6 5 9 9 N 1.46501 * 109.46703 * 65.00399 * 8 7 6 10 10 C 1.34784 * 119.99925 * 179.97438 * 9 8 7 11 11 O 1.21577 * 119.99799 * 0.02562 * 10 9 8 12 12 N 1.34773 * 120.00112 * 179.97438 * 10 9 8 13 13 C 1.39454 * 120.00224 * 184.82373 * 12 10 9 14 14 C 1.38644 * 119.64992 * 185.83266 * 13 12 10 15 15 C 1.40826 * 118.67290 * 179.72967 * 14 13 12 16 16 C 1.41542 * 120.99716 * 180.25442 * 15 14 13 17 17 H 1.08004 * 119.99848 * 146.64534 * 16 15 14 18 18 C 1.40029 * 119.99933 * 326.65259 * 16 15 14 19 19 N 1.30748 * 120.00210 * 168.30852 * 18 16 15 20 20 Si 1.86803 * 120.00247 * 348.30795 * 18 16 15 21 21 H 1.48500 * 109.46824 * 92.68469 * 20 18 16 22 22 H 1.48493 * 109.47301 * 212.69007 * 20 18 16 23 23 H 1.48502 * 109.46910 * 332.69018 * 20 18 16 24 24 C 1.41161 * 118.00609 * 0.27160 * 15 14 13 25 25 C 1.36598 * 119.12605 * 0.02562 * 24 15 14 26 26 N 1.32065 * 121.25890 * 0.02562 * 25 24 15 27 27 H 1.09003 * 109.47239 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47331 * 299.99866 * 1 2 3 29 29 H 1.08998 * 109.46726 * 60.00395 * 1 2 3 30 30 H 1.09001 * 109.47397 * 239.99349 * 2 1 3 31 31 H 1.09007 * 109.46913 * 119.99581 * 2 1 3 32 32 H 1.09007 * 109.47061 * 59.99496 * 4 3 2 33 33 H 1.09005 * 109.46673 * 300.00302 * 4 3 2 34 34 H 1.08998 * 109.47354 * 305.00290 * 5 4 3 35 35 H 1.08998 * 109.47391 * 184.99580 * 5 4 3 36 36 H 1.09000 * 109.46743 * 60.00654 * 7 6 5 37 37 H 1.08991 * 109.47370 * 299.99813 * 7 6 5 38 38 H 1.08998 * 109.47448 * 305.00303 * 8 7 6 39 39 H 1.09002 * 109.47115 * 185.00111 * 8 7 6 40 40 H 0.97001 * 120.00447 * 0.02562 * 9 8 7 41 41 H 0.97005 * 119.99704 * 4.83053 * 12 10 9 42 42 H 1.07996 * 120.66466 * 0.02562 * 14 13 12 43 43 H 0.96995 * 119.99798 * 179.97438 * 19 18 16 44 44 H 1.07998 * 120.43763 * 179.97438 * 24 15 14 45 45 H 1.08000 * 119.36777 * 179.97438 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.4308 1.4602 0.0006 5 6 3.8254 2.9383 -0.0001 6 8 3.3975 3.5460 1.2204 7 6 3.7192 4.9347 1.3223 8 6 3.2160 5.4778 2.6612 9 7 3.9438 4.8301 3.7554 10 6 3.6668 5.1545 5.0340 11 8 2.8127 5.9842 5.2792 12 7 4.3359 4.5583 6.0405 13 6 3.9814 4.8184 7.3639 14 6 4.7492 4.2984 8.3946 15 6 4.3757 4.5786 9.7232 16 6 5.1273 4.0774 10.8128 17 1 5.2154 4.6569 11.7200 18 6 5.7566 2.8304 10.7146 19 7 6.6308 2.4664 11.6162 20 14 5.3473 1.6867 9.2954 21 1 6.3044 1.9157 8.1834 22 1 5.4462 0.2770 9.7514 23 1 3.9658 1.9586 8.8233 24 6 3.2291 5.3742 9.9356 25 6 2.5317 5.8370 8.8562 26 7 2.9101 5.5537 7.6230 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.8934 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8901 32 1 3.8341 0.9764 -0.8892 33 1 3.8332 0.9767 0.8908 34 1 3.3499 3.4409 -0.8424 35 1 4.9082 3.0254 -0.0892 36 1 3.2418 5.4789 0.5074 37 1 4.7998 5.0627 1.2609 38 1 2.1506 5.2701 2.7604 39 1 3.3816 6.5544 2.7019 40 1 4.6255 4.1684 3.5597 41 1 5.0643 3.9483 5.8444 42 1 5.6191 3.6944 8.1828 43 1 7.0664 1.6025 11.5483 44 1 2.9070 5.6130 10.9384 45 1 1.6536 6.4457 9.0142 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000932162335.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:49:54 Heat of formation + Delta-G solvation = -108.180494 kcal Electronic energy + Delta-G solvation = -26466.362484 eV Core-core repulsion = 22483.443832 eV Total energy + Delta-G solvation = -3982.918652 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.54491 -40.08393 -39.45016 -38.40202 -36.26052 -35.62848 -35.54164 -33.19249 -32.78357 -31.35863 -30.27062 -29.05651 -27.89021 -24.27024 -24.16431 -23.69723 -23.48797 -22.88774 -21.74625 -19.86345 -19.46338 -18.20281 -17.98936 -17.85205 -17.37107 -16.83433 -16.71357 -16.46098 -16.35488 -16.12282 -15.87231 -15.64702 -15.04127 -14.88211 -14.81163 -14.73292 -14.43881 -14.09515 -13.74782 -13.45233 -13.43250 -12.89078 -12.76890 -12.63798 -12.59527 -12.51558 -12.35889 -12.09663 -11.86678 -11.84301 -11.57140 -11.38687 -11.17242 -10.59843 -10.54197 -10.13518 -10.06355 -9.72018 -8.97857 -8.92099 -6.71826 0.60203 0.76686 1.23892 1.39245 1.48147 1.55529 2.10710 2.21575 2.65642 2.71897 2.76243 3.13647 3.52634 3.88863 4.01532 4.11765 4.14744 4.21212 4.26373 4.34221 4.44247 4.45847 4.47933 4.51581 4.55218 4.60878 4.66078 4.70080 4.76774 4.80119 4.87892 4.90637 5.01027 5.13872 5.23736 5.29714 5.47381 5.52752 5.69040 5.85222 6.12279 6.19795 6.29119 6.33661 6.52790 6.70390 6.91831 7.52516 7.75834 8.14086 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.012518 B = 0.002667 C = 0.002420 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2236.188649 B =10495.021845 C =11566.167867 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.051 3.949 3 O -0.411 6.411 4 C 0.056 3.944 5 C 0.060 3.940 6 O -0.406 6.406 7 C 0.059 3.941 8 C 0.141 3.859 9 N -0.725 5.725 10 C 0.691 3.309 11 O -0.577 6.577 12 N -0.665 5.665 13 C 0.383 3.617 14 C -0.322 4.322 15 C 0.115 3.885 16 C -0.471 4.471 17 H 0.067 0.933 18 C 0.052 3.948 19 N -0.840 5.840 20 Si 0.966 3.034 21 H -0.243 1.243 22 H -0.277 1.277 23 H -0.265 1.265 24 C -0.279 4.279 25 C 0.129 3.871 26 N -0.572 5.572 27 H 0.089 0.911 28 H 0.047 0.953 29 H 0.061 0.939 30 H 0.065 0.935 31 H 0.047 0.953 32 H 0.088 0.912 33 H 0.052 0.948 34 H 0.062 0.938 35 H 0.092 0.908 36 H 0.086 0.914 37 H 0.081 0.919 38 H 0.051 0.949 39 H 0.085 0.915 40 H 0.410 0.590 41 H 0.421 0.579 42 H 0.120 0.880 43 H 0.297 0.703 44 H 0.123 0.877 45 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.590 -5.728 -27.416 28.053 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.025 4.025 3 O -0.331 6.331 4 C -0.020 4.020 5 C -0.016 4.016 6 O -0.326 6.326 7 C -0.018 4.018 8 C 0.017 3.983 9 N -0.383 5.383 10 C 0.390 3.610 11 O -0.452 6.452 12 N -0.314 5.314 13 C 0.153 3.847 14 C -0.348 4.348 15 C 0.106 3.894 16 C -0.502 4.502 17 H 0.085 0.915 18 C -0.164 4.164 19 N -0.467 5.467 20 Si 0.789 3.211 21 H -0.167 1.167 22 H -0.203 1.203 23 H -0.189 1.189 24 C -0.302 4.302 25 C -0.023 4.023 26 N -0.291 5.291 27 H 0.107 0.893 28 H 0.066 0.934 29 H 0.080 0.920 30 H 0.083 0.917 31 H 0.065 0.935 32 H 0.106 0.894 33 H 0.071 0.929 34 H 0.080 0.920 35 H 0.109 0.891 36 H 0.104 0.896 37 H 0.099 0.901 38 H 0.069 0.931 39 H 0.103 0.897 40 H 0.246 0.754 41 H 0.259 0.741 42 H 0.137 0.863 43 H 0.108 0.892 44 H 0.141 0.859 45 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -2.921 -4.724 -27.714 28.265 hybrid contribution 1.373 -1.381 0.644 2.051 sum -1.548 -6.105 -27.070 27.793 Atomic orbital electron populations 1.21768 0.93569 1.03193 1.02378 1.22607 0.96021 0.83158 1.00735 1.87934 1.22004 1.27628 1.95574 1.22720 0.81297 0.96204 1.01752 1.22712 0.99839 0.92184 0.86855 1.88000 1.81723 1.23498 1.39348 1.22781 1.01004 0.82265 0.95707 1.21303 0.96048 0.97097 0.83806 1.44940 1.43911 1.46697 1.02782 1.16223 0.81758 0.81663 0.81348 1.90981 1.35162 1.35859 1.83195 1.42523 1.37637 1.48617 1.02663 1.17969 0.90796 0.92540 0.83363 1.21311 1.05430 1.15681 0.92369 1.17914 0.90057 0.89529 0.91852 1.19442 1.26427 1.03761 1.00528 0.91514 1.26796 0.91091 0.99674 0.98883 1.69629 1.19577 1.22574 1.34880 0.85482 0.80855 0.76210 0.78531 1.16748 1.20337 1.18935 1.21925 0.99038 1.09506 0.99779 1.22115 0.98107 0.95417 0.86673 1.67422 1.16967 1.20938 1.23822 0.89255 0.93361 0.91958 0.91697 0.93491 0.89443 0.92945 0.91958 0.89059 0.89617 0.90134 0.93074 0.89683 0.75362 0.74102 0.86290 0.89203 0.85948 0.82355 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.14 10.28 71.98 0.74 -1.40 16 2 C 0.05 0.76 6.66 71.98 0.48 1.24 16 3 O -0.41 -8.19 10.31 -144.34 -1.49 -9.68 16 4 C 0.06 0.77 6.32 71.98 0.45 1.23 16 5 C 0.06 0.74 6.32 71.98 0.45 1.19 16 6 O -0.41 -7.55 10.25 -144.34 -1.48 -9.03 16 7 C 0.06 0.83 6.07 71.98 0.44 1.26 16 8 C 0.14 3.09 6.06 86.38 0.52 3.61 16 9 N -0.72 -18.42 5.51 -478.53 -2.64 -21.06 16 10 C 0.69 25.40 8.51 179.05 1.52 26.92 16 11 O -0.58 -26.67 14.64 -3.96 -0.06 -26.73 16 12 N -0.66 -24.59 5.40 -322.37 -1.74 -26.33 16 13 C 0.38 17.72 7.40 132.76 0.98 18.71 16 14 C -0.32 -15.32 6.96 23.00 0.16 -15.16 16 15 C 0.12 5.91 5.09 -21.11 -0.11 5.80 16 16 C -0.47 -25.74 9.66 23.52 0.23 -25.51 16 17 H 0.07 3.90 8.06 -2.91 -0.02 3.88 16 18 C 0.05 2.68 5.48 85.29 0.47 3.15 16 19 N -0.84 -44.21 13.92 21.84 0.30 -43.91 16 20 Si 0.97 41.00 24.49 68.60 1.68 42.68 16 21 H -0.24 -9.14 6.71 99.48 0.67 -8.47 16 22 H -0.28 -11.04 7.11 99.48 0.71 -10.34 16 23 H -0.26 -12.07 6.70 99.48 0.67 -11.40 16 24 C -0.28 -13.27 9.85 22.60 0.22 -13.05 16 25 C 0.13 5.88 11.10 84.27 0.94 6.82 16 26 N -0.57 -28.20 7.90 -194.27 -1.53 -29.73 16 27 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 28 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 29 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 30 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 31 H 0.05 0.69 8.14 -2.38 -0.02 0.67 16 32 H 0.09 0.71 8.14 -2.38 -0.02 0.69 16 33 H 0.05 0.76 8.14 -2.38 -0.02 0.74 16 34 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 35 H 0.09 0.61 8.14 -2.39 -0.02 0.59 16 36 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 37 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 38 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 39 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16 40 H 0.41 7.86 8.49 -92.71 -0.79 7.07 16 41 H 0.42 12.05 8.72 -92.70 -0.81 11.24 16 42 H 0.12 5.28 4.79 -2.91 -0.01 5.27 16 43 H 0.30 13.93 8.29 -92.71 -0.77 13.16 16 44 H 0.12 5.37 8.06 -2.91 -0.02 5.35 16 45 H 0.16 6.11 8.06 -2.91 -0.02 6.09 16 Total: -1.00 -75.70 379.01 -0.11 -75.81 By element: Atomic # 1 Polarization: 33.82 SS G_CDS: -0.66 Total: 33.16 kcal Atomic # 6 Polarization: 7.32 SS G_CDS: 7.50 Total: 14.82 kcal Atomic # 7 Polarization: -115.43 SS G_CDS: -5.61 Total: -121.03 kcal Atomic # 8 Polarization: -42.41 SS G_CDS: -3.03 Total: -45.44 kcal Atomic # 14 Polarization: 41.00 SS G_CDS: 1.68 Total: 42.68 kcal Total: -75.70 -0.11 -75.81 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932162335.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.373 kcal (2) G-P(sol) polarization free energy of solvation -75.699 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.108 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.807 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.180 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds