Wall clock time and date at job start Tue Mar 31 2020 14:48:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.42903 * 109.47259 * 2 1 4 4 C 1.35352 * 116.99992 * 180.02562 * 3 2 1 5 5 N 1.30544 * 125.44716 * 180.02562 * 4 3 2 6 6 C 1.36325 * 108.38730 * 179.97438 * 5 4 3 7 7 C 1.47371 * 126.41777 * 179.97438 * 6 5 4 8 8 O 1.21613 * 120.00117 * 180.02562 * 7 6 5 9 9 N 1.34774 * 119.99461 * 0.02562 * 7 6 5 10 10 C 1.46501 * 119.99864 * 180.02562 * 9 7 6 11 11 H 1.09005 * 109.44334 * 324.96286 * 10 9 7 12 12 C 1.53037 * 109.46314 * 84.92622 * 10 9 7 13 13 C 1.53197 * 109.30811 * 58.65937 * 12 10 9 14 14 N 1.46917 * 108.77595 * 54.63640 * 13 12 10 15 15 C 1.36938 * 120.63049 * 126.41789 * 14 13 12 16 16 H 1.07996 * 120.00265 * 332.57591 * 15 14 13 17 17 C 1.38815 * 120.00093 * 152.58596 * 15 14 13 18 18 N 1.31620 * 120.00190 * 159.30281 * 17 15 14 19 19 Si 1.86799 * 120.00017 * 339.30126 * 17 15 14 20 20 H 1.48504 * 109.47203 * 92.97710 * 19 17 15 21 21 H 1.48504 * 109.47098 * 212.97476 * 19 17 15 22 22 H 1.48494 * 109.47032 * 332.97631 * 19 17 15 23 23 C 1.46928 * 118.74040 * 306.38758 * 14 13 12 24 24 C 1.53038 * 109.46182 * 204.99974 * 10 9 7 25 25 H 1.09005 * 109.49725 * 181.39206 * 24 10 9 26 26 C 1.52998 * 109.52400 * 61.31003 * 24 10 9 27 27 C 1.35920 * 107.16979 * 0.22066 * 6 5 4 28 28 O 1.34204 * 125.44563 * 359.97336 * 4 3 2 29 29 H 1.09005 * 109.46938 * 59.99826 * 1 2 3 30 30 H 1.08993 * 109.47517 * 180.02562 * 1 2 3 31 31 H 1.09008 * 109.46733 * 300.00229 * 1 2 3 32 32 H 1.08997 * 109.47152 * 239.99767 * 2 1 3 33 33 H 1.08997 * 109.46884 * 119.99867 * 2 1 3 34 34 H 0.96994 * 120.00528 * 359.97438 * 9 7 6 35 35 H 1.09005 * 109.49979 * 298.71119 * 12 10 9 36 36 H 1.09002 * 109.52789 * 178.62453 * 12 10 9 37 37 H 1.08998 * 109.58698 * 294.84589 * 13 12 10 38 38 H 1.09004 * 109.58308 * 174.42634 * 13 12 10 39 39 H 0.97000 * 120.00566 * 180.02562 * 18 17 15 40 40 H 1.09002 * 109.58969 * 293.82675 * 23 14 13 41 41 H 1.09003 * 109.70530 * 173.46612 * 23 14 13 42 42 H 1.08997 * 109.47024 * 300.08027 * 26 24 10 43 43 H 1.09001 * 109.47183 * 60.08419 * 26 24 10 44 44 H 1.09008 * 109.47090 * 180.08112 * 26 24 10 45 45 H 1.08000 * 126.45385 * 179.77533 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3483 1.5246 -0.0005 5 7 3.9595 2.6781 -0.0001 6 6 5.3039 2.4523 -0.0004 7 6 6.3632 3.4770 -0.0006 8 8 7.5325 3.1428 -0.0012 9 7 6.0359 4.7844 -0.0001 10 6 7.0887 5.8030 -0.0009 11 1 7.9352 5.4504 0.5884 12 6 7.5426 6.0661 -1.4385 13 6 6.3431 6.5283 -2.2719 14 7 5.7273 7.6874 -1.6119 15 6 5.5216 8.8538 -2.2992 16 1 6.1608 9.1104 -3.1310 17 6 4.4915 9.7065 -1.9267 18 7 4.5247 10.9734 -2.2822 19 14 3.0581 9.0561 -0.9209 20 1 3.3330 9.2625 0.5238 21 1 1.8189 9.7826 -1.2977 22 1 2.8828 7.6061 -1.1892 23 6 5.3357 7.5712 -0.2005 24 6 6.5464 7.0974 0.6096 25 1 7.3218 7.8632 0.5867 26 6 6.1236 6.8418 2.0576 27 6 5.4846 1.1052 -0.0059 28 8 4.2631 0.5427 -0.0006 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 5.1033 5.0509 0.0001 35 1 7.9503 5.1495 -1.8649 36 1 8.3088 6.8414 -1.4426 37 1 5.6155 5.7200 -2.3446 38 1 6.6788 6.8115 -3.2695 39 1 3.8051 11.5694 -2.0216 40 1 4.5259 6.8479 -0.1043 41 1 5.0050 8.5414 0.1703 42 1 5.3483 6.0760 2.0800 43 1 6.9852 6.5036 2.6334 44 1 5.7362 7.7639 2.4912 45 1 6.4308 0.5846 -0.0109 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000942271302.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:48:13 Heat of formation + Delta-G solvation = -47.136171 kcal Electronic energy + Delta-G solvation = -28302.486575 eV Core-core repulsion = 24322.215004 eV Total energy + Delta-G solvation = -3980.271571 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -44.56255 -41.28498 -40.02150 -39.26228 -36.12959 -36.00998 -33.87298 -33.64833 -32.89991 -31.91124 -30.56202 -27.67722 -27.24630 -25.55924 -24.58440 -24.12450 -23.35143 -22.52987 -21.82282 -20.33723 -20.20404 -18.82602 -18.66793 -18.51502 -17.45551 -17.26961 -16.73853 -16.59065 -16.19297 -16.09817 -15.90457 -15.42860 -15.09930 -14.99526 -14.75663 -14.56793 -14.35161 -13.94847 -13.88552 -13.58848 -13.55885 -13.11060 -13.01147 -12.69443 -12.64032 -12.55425 -12.34477 -12.10557 -11.96901 -11.90295 -11.81152 -11.65381 -11.54550 -11.35483 -11.24720 -10.65195 -10.12553 -9.75499 -8.92971 -8.16639 -5.48098 0.01993 0.81751 0.89519 1.28459 1.41376 1.49906 1.66512 2.09711 2.20355 2.40758 3.04568 3.28662 3.34126 3.68403 3.72332 3.90959 3.93690 3.94715 4.02069 4.07550 4.24444 4.26551 4.37254 4.40488 4.53641 4.60006 4.65141 4.65418 4.80687 4.84309 4.84671 4.88605 4.99700 5.02733 5.08881 5.16416 5.20502 5.29797 5.34391 5.53288 5.62548 5.86923 6.12753 6.30021 6.55946 6.90751 7.05636 7.61524 8.02343 9.03227 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.012528 B = 0.003939 C = 0.003300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2234.467879 B = 7105.825217 C = 8482.672060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.042 3.958 3 O -0.260 6.260 4 C 0.384 3.616 5 N -0.491 5.491 6 C -0.079 4.079 7 C 0.606 3.394 8 O -0.558 6.558 9 N -0.697 5.697 10 C 0.165 3.835 11 H 0.096 0.904 12 C -0.136 4.136 13 C 0.149 3.851 14 N -0.616 5.616 15 C -0.246 4.246 16 H 0.054 0.946 17 C -0.031 4.031 18 N -0.955 5.955 19 Si 0.940 3.060 20 H -0.271 1.271 21 H -0.312 1.312 22 H -0.265 1.265 23 C 0.129 3.871 24 C -0.109 4.109 25 H 0.086 0.914 26 C -0.140 4.140 27 C 0.033 3.967 28 O -0.214 6.214 29 H 0.064 0.936 30 H 0.113 0.887 31 H 0.067 0.933 32 H 0.085 0.915 33 H 0.088 0.912 34 H 0.406 0.594 35 H 0.073 0.927 36 H 0.074 0.926 37 H 0.024 0.976 38 H 0.054 0.946 39 H 0.261 0.739 40 H 0.026 0.974 41 H 0.053 0.947 42 H 0.053 0.947 43 H 0.075 0.925 44 H 0.057 0.943 45 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.635 -27.073 9.155 28.700 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.032 4.032 3 O -0.169 6.169 4 C 0.138 3.862 5 N -0.237 5.237 6 C -0.197 4.197 7 C 0.392 3.608 8 O -0.438 6.438 9 N -0.347 5.347 10 C 0.061 3.939 11 H 0.114 0.886 12 C -0.175 4.175 13 C 0.024 3.976 14 N -0.340 5.340 15 C -0.376 4.376 16 H 0.072 0.928 17 C -0.226 4.226 18 N -0.601 5.601 19 Si 0.769 3.231 20 H -0.197 1.197 21 H -0.241 1.241 22 H -0.190 1.190 23 C 0.004 3.996 24 C -0.130 4.130 25 H 0.104 0.896 26 C -0.197 4.197 27 C -0.040 4.040 28 O -0.105 6.105 29 H 0.084 0.916 30 H 0.132 0.868 31 H 0.086 0.914 32 H 0.103 0.897 33 H 0.106 0.894 34 H 0.243 0.757 35 H 0.091 0.909 36 H 0.093 0.907 37 H 0.042 0.958 38 H 0.072 0.928 39 H 0.070 0.930 40 H 0.044 0.956 41 H 0.072 0.928 42 H 0.072 0.928 43 H 0.093 0.907 44 H 0.076 0.924 45 H 0.287 0.713 Dipole moment (debyes) X Y Z Total from point charges -2.447 -26.503 9.135 28.140 hybrid contribution -1.102 -0.091 -0.038 1.107 sum -3.549 -26.594 9.096 28.330 Atomic orbital electron populations 1.21872 0.90012 1.05104 1.03718 1.23446 0.97823 0.77691 1.04258 1.86435 1.08073 1.33448 1.88956 1.23275 0.84161 0.81422 0.97376 1.71053 1.04788 1.23127 1.24745 1.21629 0.89771 0.94956 1.13349 1.16763 0.86234 0.81842 0.75948 1.90787 1.18509 1.81736 1.52721 1.46009 1.11278 1.05023 1.72365 1.20908 0.89996 0.86536 0.96502 0.88578 1.22262 0.98393 1.01240 0.95645 1.20971 0.93316 0.87942 0.95340 1.44453 1.72102 1.10807 1.06675 1.18869 1.09832 0.95422 1.13483 0.92836 1.25836 1.00241 0.95632 1.00855 1.69955 1.34275 1.04226 1.51686 0.86017 0.79767 0.78521 0.78794 1.19742 1.24058 1.18995 1.21388 0.95386 0.98736 0.84088 1.21823 0.99016 0.96565 0.95591 0.89576 1.21753 1.02045 1.01762 0.94180 1.25618 0.86630 0.91887 0.99852 1.84427 1.16039 1.38464 1.71546 0.91644 0.86821 0.91409 0.89651 0.89379 0.75708 0.90870 0.90738 0.95820 0.92764 0.92950 0.95594 0.92841 0.92773 0.90651 0.92358 0.71253 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.14 10.28 71.98 0.74 -0.40 16 2 C 0.04 0.45 6.38 71.98 0.46 0.91 16 3 O -0.26 -5.40 10.19 -64.20 -0.65 -6.05 16 4 C 0.38 9.06 8.98 130.43 1.17 10.23 16 5 N -0.49 -14.23 11.10 -419.40 -4.65 -18.88 16 6 C -0.08 -2.08 6.99 40.31 0.28 -1.80 16 7 C 0.61 17.98 7.78 86.65 0.67 18.65 16 8 O -0.56 -17.79 16.55 -4.07 -0.07 -17.85 16 9 N -0.70 -21.59 3.59 -445.73 -1.60 -23.19 16 10 C 0.16 5.12 2.21 45.02 0.10 5.22 16 11 H 0.10 2.81 7.58 -2.38 -0.02 2.79 16 12 C -0.14 -4.53 5.77 30.67 0.18 -4.36 16 13 C 0.15 6.03 6.26 86.37 0.54 6.57 16 14 N -0.62 -29.31 2.77 -699.10 -1.94 -31.24 16 15 C -0.25 -14.16 10.03 84.03 0.84 -13.32 16 16 H 0.05 3.35 8.06 -2.91 -0.02 3.33 16 17 C -0.03 -1.82 5.23 84.86 0.44 -1.38 16 18 N -0.96 -60.63 13.97 21.65 0.30 -60.33 16 19 Si 0.94 47.46 24.35 68.60 1.67 49.13 16 20 H -0.27 -12.79 6.62 99.48 0.66 -12.13 16 21 H -0.31 -16.03 7.11 99.48 0.71 -15.32 16 22 H -0.27 -13.08 6.64 99.48 0.66 -12.42 16 23 C 0.13 5.45 3.19 86.36 0.28 5.73 16 24 C -0.11 -3.64 2.67 -10.72 -0.03 -3.67 16 25 H 0.09 2.96 8.14 -2.38 -0.02 2.94 16 26 C -0.14 -3.83 9.06 71.98 0.65 -3.18 16 27 C 0.03 0.60 11.93 67.28 0.80 1.40 16 28 O -0.21 -3.93 10.20 18.92 0.19 -3.74 16 29 H 0.06 0.61 8.14 -2.38 -0.02 0.59 16 30 H 0.11 0.26 8.14 -2.39 -0.02 0.24 16 31 H 0.07 0.59 8.14 -2.38 -0.02 0.57 16 32 H 0.09 0.73 8.14 -2.39 -0.02 0.71 16 33 H 0.09 0.69 8.14 -2.39 -0.02 0.67 16 34 H 0.41 13.50 6.46 -92.71 -0.60 12.90 16 35 H 0.07 2.30 8.14 -2.38 -0.02 2.28 16 36 H 0.07 2.50 8.14 -2.39 -0.02 2.48 16 37 H 0.02 0.96 7.74 -2.39 -0.02 0.94 16 38 H 0.05 2.24 7.93 -2.39 -0.02 2.23 16 39 H 0.26 15.79 8.31 -92.71 -0.77 15.02 16 40 H 0.03 1.10 5.57 -2.39 -0.01 1.08 16 41 H 0.05 2.51 4.50 -2.39 -0.01 2.50 16 42 H 0.05 1.47 7.54 -2.39 -0.02 1.45 16 43 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 44 H 0.06 1.59 8.14 -2.38 -0.02 1.57 16 45 H 0.27 2.71 8.06 -2.91 -0.02 2.68 16 Total: -1.00 -73.44 363.00 0.70 -72.74 By element: Atomic # 1 Polarization: 18.50 SS G_CDS: 0.32 Total: 18.81 kcal Atomic # 6 Polarization: 13.48 SS G_CDS: 7.13 Total: 20.62 kcal Atomic # 7 Polarization: -125.76 SS G_CDS: -7.89 Total: -133.65 kcal Atomic # 8 Polarization: -27.12 SS G_CDS: -0.53 Total: -27.64 kcal Atomic # 14 Polarization: 47.46 SS G_CDS: 1.67 Total: 49.13 kcal Total: -73.44 0.70 -72.74 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000942271302.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.602 kcal (2) G-P(sol) polarization free energy of solvation -73.440 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.838 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.702 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.738 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.136 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds