Wall clock time and date at job start Tue Mar 31 2020 14:48:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.42905 * 109.47180 * 2 1 4 4 C 1.35346 * 117.00095 * 179.97438 * 3 2 1 5 5 N 1.30550 * 125.45141 * 180.02562 * 4 3 2 6 6 C 1.36322 * 108.38646 * 179.97438 * 5 4 3 7 7 C 1.47378 * 126.40965 * 179.97438 * 6 5 4 8 8 O 1.21622 * 119.99478 * 180.02562 * 7 6 5 9 9 N 1.34777 * 119.99942 * 0.02895 * 7 6 5 10 10 C 1.46498 * 119.99410 * 179.97438 * 9 7 6 11 11 H 1.08991 * 109.46481 * 35.00081 * 10 9 7 12 12 C 1.53046 * 109.45990 * 275.02178 * 10 9 7 13 13 C 1.53193 * 109.31116 * 301.37860 * 12 10 9 14 14 N 1.46927 * 108.76409 * 305.34004 * 13 12 10 15 15 C 1.36943 * 120.62959 * 233.63949 * 14 13 12 16 16 H 1.08002 * 119.99480 * 152.60687 * 15 14 13 17 17 C 1.38816 * 119.99869 * 332.61063 * 15 14 13 18 18 N 1.31621 * 119.99467 * 159.36881 * 17 15 14 19 19 Si 1.86791 * 120.00297 * 339.37035 * 17 15 14 20 20 H 1.48502 * 109.47243 * 92.92907 * 19 17 15 21 21 H 1.48499 * 109.47533 * 212.93132 * 19 17 15 22 22 H 1.48506 * 109.47394 * 332.92988 * 19 17 15 23 23 C 1.46921 * 118.73848 * 53.62107 * 14 13 12 24 24 C 1.53044 * 109.45613 * 154.97233 * 10 9 7 25 25 H 1.09001 * 109.49593 * 178.62174 * 24 10 9 26 26 C 1.52997 * 109.49854 * 298.68491 * 24 10 9 27 27 C 1.35911 * 107.17900 * 0.24268 * 6 5 4 28 28 O 1.34209 * 125.44671 * 0.02562 * 4 3 2 29 29 H 1.09004 * 109.47460 * 179.97438 * 1 2 3 30 30 H 1.09006 * 109.47153 * 299.99728 * 1 2 3 31 31 H 1.08999 * 109.47297 * 59.99995 * 1 2 3 32 32 H 1.09004 * 109.47364 * 239.99773 * 2 1 3 33 33 H 1.08999 * 109.47297 * 120.00004 * 2 1 3 34 34 H 0.96995 * 119.99931 * 359.97438 * 9 7 6 35 35 H 1.08996 * 109.49291 * 61.31451 * 12 10 9 36 36 H 1.09000 * 109.49860 * 181.41162 * 12 10 9 37 37 H 1.09002 * 109.58340 * 185.56249 * 13 12 10 38 38 H 1.08993 * 109.60071 * 65.13671 * 13 12 10 39 39 H 0.96997 * 119.99421 * 179.97438 * 18 17 15 40 40 H 1.08998 * 109.58608 * 186.60372 * 23 14 13 41 41 H 1.08998 * 109.58684 * 66.18000 * 23 14 13 42 42 H 1.09004 * 109.46791 * 60.00535 * 26 24 10 43 43 H 1.09004 * 109.47075 * 179.97438 * 26 24 10 44 44 H 1.08998 * 109.47571 * 300.00522 * 26 24 10 45 45 H 1.07995 * 126.46231 * 179.72828 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3481 1.5247 0.0005 5 7 3.9594 2.6782 0.0011 6 6 5.3038 2.4523 0.0021 7 6 6.3630 3.4771 0.0025 8 8 7.5324 3.1429 0.0029 9 7 6.0357 4.7845 0.0024 10 6 7.0886 5.8031 0.0033 11 1 7.9354 5.4507 -0.5855 12 6 7.5418 6.0666 1.4412 13 6 6.3418 6.5283 2.2740 14 7 5.7261 7.6874 1.6136 15 6 5.5208 8.8541 2.3006 16 1 5.4985 9.7955 1.7716 17 6 5.3413 8.8268 3.6769 18 7 5.5475 9.9144 4.3890 19 14 4.8073 7.2468 4.5180 20 1 6.0066 6.4978 4.9717 21 1 3.9551 7.5732 5.6895 22 1 4.0356 6.4132 3.5616 23 6 5.3352 7.5711 0.2021 24 6 6.5464 7.0974 -0.6075 25 1 7.3218 7.8631 -0.5848 26 6 6.1241 6.8410 -2.0555 27 6 5.4846 1.1053 -0.0034 28 8 4.2630 0.5427 0.0006 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8901 31 1 -0.3634 0.5138 -0.8900 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 5.1030 5.0510 0.0017 35 1 7.9495 5.1502 1.8678 36 1 8.3075 6.8424 1.4449 37 1 6.6769 6.8116 3.2718 38 1 5.6143 5.7199 2.3465 39 1 5.4218 9.8954 5.3506 40 1 5.0062 8.5424 -0.1671 41 1 4.5256 6.8478 0.1056 42 1 5.3479 6.0761 -2.0776 43 1 5.7376 7.7630 -2.4899 44 1 6.9855 6.5012 -2.6305 45 1 6.4308 0.5847 -0.0083 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000942271304.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:48:20 Heat of formation + Delta-G solvation = -20.783892 kcal Electronic energy + Delta-G solvation = -28287.207333 eV Core-core repulsion = 24308.078483 eV Total energy + Delta-G solvation = -3979.128851 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -43.65361 -39.97188 -39.24746 -37.81746 -35.14283 -34.38757 -32.56680 -32.33244 -31.51457 -30.39170 -29.60935 -26.37123 -25.49550 -24.42344 -23.82454 -22.64668 -21.86011 -21.48244 -20.74287 -19.26125 -18.76836 -17.83298 -17.49014 -16.76786 -16.57431 -15.96628 -15.58774 -15.33295 -15.03458 -14.88337 -14.25580 -14.10808 -13.67289 -13.51210 -13.43255 -13.39017 -13.34642 -13.21353 -12.47401 -12.24501 -12.21409 -11.79500 -11.70693 -11.57691 -11.47006 -11.23741 -11.11553 -10.94477 -10.61729 -10.48352 -10.19915 -10.06313 -9.92457 -9.63620 -9.44804 -8.96784 -8.74819 -8.52241 -6.93190 -5.91731 -3.27213 0.93910 1.63130 1.89888 2.45471 3.23546 3.33837 3.36993 3.52537 3.57347 4.31188 4.32002 4.32627 4.57308 4.63557 4.67272 4.87160 4.97427 5.06710 5.18154 5.23037 5.28076 5.28475 5.38587 5.48110 5.52129 5.59889 5.73530 5.90938 5.93322 6.03090 6.09458 6.21196 6.32834 6.39450 6.40900 6.44763 6.64425 6.69007 6.74498 6.78064 6.97608 7.28453 7.73181 7.99345 8.28576 8.35882 8.97246 9.75781 10.13295 11.24234 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.012092 B = 0.003917 C = 0.003400 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2314.976770 B = 7147.111243 C = 8234.201841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.051 3.949 3 O -0.244 6.244 4 C 0.383 3.617 5 N -0.452 5.452 6 C -0.042 4.042 7 C 0.600 3.400 8 O -0.541 6.541 9 N -0.693 5.693 10 C 0.158 3.842 11 H 0.082 0.918 12 C -0.146 4.146 13 C 0.128 3.872 14 N -0.605 5.605 15 C -0.258 4.258 16 H 0.086 0.914 17 C 0.024 3.976 18 N -0.909 5.909 19 Si 0.881 3.119 20 H -0.290 1.290 21 H -0.304 1.304 22 H -0.270 1.270 23 C 0.153 3.847 24 C -0.119 4.119 25 H 0.088 0.912 26 C -0.143 4.143 27 C -0.003 4.003 28 O -0.227 6.227 29 H 0.087 0.913 30 H 0.072 0.928 31 H 0.072 0.928 32 H 0.073 0.927 33 H 0.074 0.926 34 H 0.411 0.589 35 H 0.060 0.940 36 H 0.076 0.924 37 H 0.072 0.928 38 H 0.025 0.975 39 H 0.262 0.738 40 H 0.067 0.933 41 H 0.021 0.979 42 H 0.052 0.948 43 H 0.056 0.944 44 H 0.050 0.950 45 H 0.236 0.764 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.012 -21.348 -12.383 25.183 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.024 4.024 3 O -0.152 6.152 4 C 0.136 3.864 5 N -0.198 5.198 6 C -0.161 4.161 7 C 0.385 3.615 8 O -0.420 6.420 9 N -0.344 5.344 10 C 0.054 3.946 11 H 0.100 0.900 12 C -0.187 4.187 13 C 0.002 3.998 14 N -0.328 5.328 15 C -0.386 4.386 16 H 0.104 0.896 17 C -0.174 4.174 18 N -0.552 5.552 19 Si 0.712 3.288 20 H -0.218 1.218 21 H -0.232 1.232 22 H -0.195 1.195 23 C 0.026 3.974 24 C -0.140 4.140 25 H 0.106 0.894 26 C -0.201 4.201 27 C -0.075 4.075 28 O -0.119 6.119 29 H 0.105 0.895 30 H 0.092 0.908 31 H 0.091 0.909 32 H 0.092 0.908 33 H 0.092 0.908 34 H 0.249 0.751 35 H 0.078 0.922 36 H 0.095 0.905 37 H 0.090 0.910 38 H 0.043 0.957 39 H 0.072 0.928 40 H 0.086 0.914 41 H 0.039 0.961 42 H 0.071 0.929 43 H 0.075 0.925 44 H 0.069 0.931 45 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges -4.769 -20.785 -12.214 24.575 hybrid contribution -0.482 -1.646 0.743 1.869 sum -5.251 -22.431 -11.471 25.735 Atomic orbital electron populations 1.21815 0.91194 1.03606 1.04356 1.23055 0.96916 0.79403 1.02978 1.86407 1.08914 1.30731 1.89177 1.23302 0.83477 0.81548 0.98034 1.71162 1.03947 1.21457 1.23206 1.21806 0.90285 0.94136 1.09863 1.16637 0.86030 0.81954 0.76882 1.90809 1.17831 1.81532 1.51779 1.46016 1.11780 1.04680 1.71921 1.21006 0.89540 0.86864 0.97187 0.89999 1.22405 0.99996 1.00975 0.95284 1.21292 0.92529 0.89658 0.96315 1.44359 1.69162 1.11797 1.07519 1.18913 1.44422 0.84939 0.90368 0.89628 1.25252 0.99492 0.96281 0.96411 1.69838 1.50922 1.28261 1.06157 0.86983 0.78539 0.84545 0.78772 1.21768 1.23249 1.19473 1.20957 0.92523 0.99275 0.84594 1.21943 1.01149 0.96289 0.94577 0.89369 1.21771 1.01019 1.01464 0.95827 1.24931 0.85788 0.92876 1.03920 1.84380 1.16253 1.39216 1.72022 0.89472 0.90846 0.90916 0.90837 0.90812 0.75134 0.92169 0.90526 0.91031 0.95735 0.92821 0.91433 0.96126 0.92911 0.92456 0.93106 0.74801 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.72 10.28 37.16 0.38 -0.34 16 2 C 0.05 0.34 6.38 37.16 0.24 0.57 16 3 O -0.24 -2.69 10.19 -40.96 -0.42 -3.11 16 4 C 0.38 4.87 8.98 52.22 0.47 5.34 16 5 N -0.45 -6.84 11.10 -11.71 -0.13 -6.97 16 6 C -0.04 -0.60 6.99 -82.99 -0.58 -1.18 16 7 C 0.60 9.72 7.78 -12.54 -0.10 9.62 16 8 O -0.54 -9.57 16.55 5.26 0.09 -9.48 16 9 N -0.69 -11.32 3.59 -54.85 -0.20 -11.52 16 10 C 0.16 2.61 2.21 -67.89 -0.15 2.46 16 11 H 0.08 1.32 7.57 -51.93 -0.39 0.92 16 12 C -0.15 -2.77 5.77 -26.61 -0.15 -2.92 16 13 C 0.13 2.88 3.94 -3.71 -0.01 2.86 16 14 N -0.61 -14.33 2.77 -172.32 -0.48 -14.80 16 15 C -0.26 -7.22 10.04 -15.05 -0.15 -7.38 16 16 H 0.09 2.54 8.06 -52.49 -0.42 2.11 16 17 C 0.02 0.72 5.23 -17.43 -0.09 0.63 16 18 N -0.91 -28.16 13.97 55.49 0.78 -27.38 16 19 Si 0.88 23.10 24.35 -169.99 -4.14 18.96 16 20 H -0.29 -7.43 6.62 56.52 0.37 -7.05 16 21 H -0.30 -8.09 7.11 56.52 0.40 -7.69 16 22 H -0.27 -7.03 6.64 56.52 0.38 -6.65 16 23 C 0.15 2.94 5.50 -3.71 -0.02 2.92 16 24 C -0.12 -1.90 2.67 -90.50 -0.24 -2.14 16 25 H 0.09 1.45 8.14 -51.93 -0.42 1.03 16 26 C -0.14 -1.87 9.05 37.16 0.34 -1.53 16 27 C 0.00 -0.03 11.93 29.90 0.36 0.32 16 28 O -0.23 -2.46 10.20 -17.78 -0.18 -2.64 16 29 H 0.09 0.22 8.14 -51.93 -0.42 -0.20 16 30 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.41 6.86 6.45 -40.82 -0.26 6.60 16 35 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 36 H 0.08 1.44 8.14 -51.93 -0.42 1.02 16 37 H 0.07 1.79 4.49 -51.93 -0.23 1.55 16 38 H 0.02 0.57 6.67 -51.93 -0.35 0.22 16 39 H 0.26 7.74 8.31 -40.82 -0.34 7.40 16 40 H 0.07 1.30 7.93 -51.93 -0.41 0.89 16 41 H 0.02 0.39 6.64 -51.93 -0.34 0.05 16 42 H 0.05 0.69 7.54 -51.93 -0.39 0.30 16 43 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 44 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 45 H 0.24 1.78 8.06 -52.49 -0.42 1.36 16 LS Contribution 362.98 15.07 5.47 5.47 Total: -1.00 -33.81 362.98 -5.58 -39.39 By element: Atomic # 1 Polarization: 9.50 SS G_CDS: -6.65 Total: 2.85 kcal Atomic # 6 Polarization: 8.95 SS G_CDS: 0.28 Total: 9.23 kcal Atomic # 7 Polarization: -60.65 SS G_CDS: -0.03 Total: -60.68 kcal Atomic # 8 Polarization: -14.72 SS G_CDS: -0.51 Total: -15.23 kcal Atomic # 14 Polarization: 23.10 SS G_CDS: -4.14 Total: 18.96 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -33.81 -5.58 -39.39 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000942271304.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.606 kcal (2) G-P(sol) polarization free energy of solvation -33.814 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.576 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.390 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.784 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds