Wall clock time and date at job start Tue Mar 31 2020 14:48:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.42905 * 109.47180 * 2 1 4 4 C 1.35346 * 117.00095 * 179.97438 * 3 2 1 5 5 N 1.30550 * 125.45141 * 180.02562 * 4 3 2 6 6 C 1.36322 * 108.38646 * 179.97438 * 5 4 3 7 7 C 1.47378 * 126.40965 * 179.97438 * 6 5 4 8 8 O 1.21622 * 119.99478 * 180.02562 * 7 6 5 9 9 N 1.34777 * 119.99942 * 0.02895 * 7 6 5 10 10 C 1.46498 * 119.99410 * 179.97438 * 9 7 6 11 11 H 1.08991 * 109.46481 * 35.00081 * 10 9 7 12 12 C 1.53046 * 109.45990 * 275.02178 * 10 9 7 13 13 C 1.53193 * 109.31116 * 301.37860 * 12 10 9 14 14 N 1.46927 * 108.76409 * 305.34004 * 13 12 10 15 15 C 1.36943 * 120.62959 * 233.63949 * 14 13 12 16 16 H 1.08002 * 119.99480 * 152.60687 * 15 14 13 17 17 C 1.38816 * 119.99869 * 332.61063 * 15 14 13 18 18 N 1.31621 * 119.99467 * 159.36881 * 17 15 14 19 19 Si 1.86791 * 120.00297 * 339.37035 * 17 15 14 20 20 H 1.48502 * 109.47243 * 92.92907 * 19 17 15 21 21 H 1.48499 * 109.47533 * 212.93132 * 19 17 15 22 22 H 1.48506 * 109.47394 * 332.92988 * 19 17 15 23 23 C 1.46921 * 118.73848 * 53.62107 * 14 13 12 24 24 C 1.53044 * 109.45613 * 154.97233 * 10 9 7 25 25 H 1.09001 * 109.49593 * 178.62174 * 24 10 9 26 26 C 1.52997 * 109.49854 * 298.68491 * 24 10 9 27 27 C 1.35911 * 107.17900 * 0.24268 * 6 5 4 28 28 O 1.34209 * 125.44671 * 0.02562 * 4 3 2 29 29 H 1.09004 * 109.47460 * 179.97438 * 1 2 3 30 30 H 1.09006 * 109.47153 * 299.99728 * 1 2 3 31 31 H 1.08999 * 109.47297 * 59.99995 * 1 2 3 32 32 H 1.09004 * 109.47364 * 239.99773 * 2 1 3 33 33 H 1.08999 * 109.47297 * 120.00004 * 2 1 3 34 34 H 0.96995 * 119.99931 * 359.97438 * 9 7 6 35 35 H 1.08996 * 109.49291 * 61.31451 * 12 10 9 36 36 H 1.09000 * 109.49860 * 181.41162 * 12 10 9 37 37 H 1.09002 * 109.58340 * 185.56249 * 13 12 10 38 38 H 1.08993 * 109.60071 * 65.13671 * 13 12 10 39 39 H 0.96997 * 119.99421 * 179.97438 * 18 17 15 40 40 H 1.08998 * 109.58608 * 186.60372 * 23 14 13 41 41 H 1.08998 * 109.58684 * 66.18000 * 23 14 13 42 42 H 1.09004 * 109.46791 * 60.00535 * 26 24 10 43 43 H 1.09004 * 109.47075 * 179.97438 * 26 24 10 44 44 H 1.08998 * 109.47571 * 300.00522 * 26 24 10 45 45 H 1.07995 * 126.46231 * 179.72828 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3481 1.5247 0.0005 5 7 3.9594 2.6782 0.0011 6 6 5.3038 2.4523 0.0021 7 6 6.3630 3.4771 0.0025 8 8 7.5324 3.1429 0.0029 9 7 6.0357 4.7845 0.0024 10 6 7.0886 5.8031 0.0033 11 1 7.9354 5.4507 -0.5855 12 6 7.5418 6.0666 1.4412 13 6 6.3418 6.5283 2.2740 14 7 5.7261 7.6874 1.6136 15 6 5.5208 8.8541 2.3006 16 1 5.4985 9.7955 1.7716 17 6 5.3413 8.8268 3.6769 18 7 5.5475 9.9144 4.3890 19 14 4.8073 7.2468 4.5180 20 1 6.0066 6.4978 4.9717 21 1 3.9551 7.5732 5.6895 22 1 4.0356 6.4132 3.5616 23 6 5.3352 7.5711 0.2021 24 6 6.5464 7.0974 -0.6075 25 1 7.3218 7.8631 -0.5848 26 6 6.1241 6.8410 -2.0555 27 6 5.4846 1.1053 -0.0034 28 8 4.2630 0.5427 0.0006 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8901 31 1 -0.3634 0.5138 -0.8900 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 5.1030 5.0510 0.0017 35 1 7.9495 5.1502 1.8678 36 1 8.3075 6.8424 1.4449 37 1 6.6769 6.8116 3.2718 38 1 5.6143 5.7199 2.3465 39 1 5.4218 9.8954 5.3506 40 1 5.0062 8.5424 -0.1671 41 1 4.5256 6.8478 0.1056 42 1 5.3479 6.0761 -2.0776 43 1 5.7376 7.7630 -2.4899 44 1 6.9855 6.5012 -2.6305 45 1 6.4308 0.5847 -0.0083 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000942271304.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:48:19 Heat of formation + Delta-G solvation = -47.591701 kcal Electronic energy + Delta-G solvation = -28288.369807 eV Core-core repulsion = 24308.078483 eV Total energy + Delta-G solvation = -3980.291325 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -44.57299 -41.28729 -40.02469 -39.25379 -36.16405 -36.06150 -33.99942 -33.39074 -32.91079 -31.96972 -30.57194 -27.80889 -27.20714 -25.50458 -24.56043 -23.76523 -23.29693 -23.08623 -21.79002 -20.32406 -20.14453 -18.78181 -18.67655 -18.51707 -17.46490 -17.28568 -16.72537 -16.62499 -16.27958 -16.12695 -15.87903 -15.37477 -15.20830 -15.03750 -14.79863 -14.54621 -14.21493 -13.95012 -13.87996 -13.58780 -13.47500 -13.21079 -12.92524 -12.82207 -12.69584 -12.56284 -12.28463 -12.10702 -11.95259 -11.91981 -11.81816 -11.68620 -11.44998 -11.39129 -11.22218 -10.72860 -10.12994 -9.76710 -8.93080 -8.18212 -5.48505 0.00282 0.80737 0.88456 1.25692 1.36805 1.45609 1.64935 2.08591 2.19213 2.38764 3.03323 3.28875 3.33635 3.69630 3.72612 3.90661 3.92166 3.93677 4.06457 4.07496 4.22400 4.24181 4.36571 4.41654 4.54951 4.57251 4.63602 4.73923 4.81248 4.84534 4.87697 4.90602 4.93643 5.02828 5.13671 5.16542 5.22051 5.29501 5.42069 5.55317 5.61719 5.85964 6.12320 6.28995 6.55536 6.89924 7.05031 7.60998 8.02318 9.01703 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.012092 B = 0.003917 C = 0.003400 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2314.976770 B = 7147.111243 C = 8234.201841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.041 3.959 3 O -0.259 6.259 4 C 0.384 3.616 5 N -0.488 5.488 6 C -0.079 4.079 7 C 0.603 3.397 8 O -0.560 6.560 9 N -0.696 5.696 10 C 0.164 3.836 11 H 0.095 0.905 12 C -0.139 4.139 13 C 0.129 3.871 14 N -0.617 5.617 15 C -0.242 4.242 16 H 0.060 0.940 17 C -0.030 4.030 18 N -0.954 5.954 19 Si 0.939 3.061 20 H -0.283 1.283 21 H -0.310 1.310 22 H -0.268 1.268 23 C 0.149 3.851 24 C -0.107 4.107 25 H 0.085 0.915 26 C -0.134 4.134 27 C 0.031 3.969 28 O -0.214 6.214 29 H 0.113 0.887 30 H 0.064 0.936 31 H 0.069 0.931 32 H 0.089 0.911 33 H 0.083 0.917 34 H 0.409 0.591 35 H 0.064 0.936 36 H 0.075 0.925 37 H 0.045 0.955 38 H 0.022 0.978 39 H 0.261 0.739 40 H 0.064 0.936 41 H 0.030 0.970 42 H 0.053 0.947 43 H 0.067 0.933 44 H 0.066 0.934 45 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.095 -24.415 -14.023 28.613 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.033 4.033 3 O -0.168 6.168 4 C 0.138 3.862 5 N -0.235 5.235 6 C -0.197 4.197 7 C 0.389 3.611 8 O -0.439 6.439 9 N -0.346 5.346 10 C 0.060 3.940 11 H 0.113 0.887 12 C -0.179 4.179 13 C 0.004 3.996 14 N -0.341 5.341 15 C -0.371 4.371 16 H 0.078 0.922 17 C -0.225 4.225 18 N -0.600 5.600 19 Si 0.769 3.231 20 H -0.210 1.210 21 H -0.239 1.239 22 H -0.192 1.192 23 C 0.024 3.976 24 C -0.128 4.128 25 H 0.103 0.897 26 C -0.192 4.192 27 C -0.041 4.041 28 O -0.105 6.105 29 H 0.131 0.869 30 H 0.083 0.917 31 H 0.088 0.912 32 H 0.107 0.893 33 H 0.102 0.898 34 H 0.246 0.754 35 H 0.083 0.917 36 H 0.094 0.906 37 H 0.063 0.937 38 H 0.040 0.960 39 H 0.070 0.930 40 H 0.082 0.918 41 H 0.048 0.952 42 H 0.072 0.928 43 H 0.086 0.914 44 H 0.085 0.915 45 H 0.286 0.714 Dipole moment (debyes) X Y Z Total from point charges -4.865 -23.897 -13.896 28.068 hybrid contribution -0.496 -0.755 1.172 1.480 sum -5.361 -24.652 -12.725 28.255 Atomic orbital electron populations 1.21869 0.89921 1.05106 1.03769 1.23450 0.97885 0.77701 1.04219 1.86432 1.07976 1.33422 1.88937 1.23296 0.84188 0.81420 0.97328 1.71041 1.04623 1.23065 1.24731 1.21625 0.89857 0.94934 1.13314 1.16819 0.86248 0.82022 0.75983 1.90789 1.18622 1.81795 1.52741 1.45992 1.11416 1.04913 1.72252 1.20919 0.90178 0.87308 0.95570 0.88681 1.22297 0.98224 1.00942 0.96392 1.21214 0.93752 0.88930 0.95730 1.44473 1.69718 1.10818 1.09054 1.18907 1.42088 0.85733 0.90390 0.92186 1.25784 1.00668 0.98738 0.97284 1.69945 1.53462 1.30310 1.06332 0.86038 0.78088 0.81432 0.77544 1.20989 1.23862 1.19240 1.21148 0.94386 0.99616 0.82432 1.21802 0.99295 0.95797 0.95876 0.89663 1.21696 1.01729 1.02150 0.93588 1.25603 0.86647 0.91927 0.99952 1.84428 1.16019 1.38492 1.71566 0.86861 0.91687 0.91236 0.89298 0.89839 0.75393 0.91698 0.90614 0.93661 0.95993 0.93003 0.91760 0.95215 0.92798 0.91375 0.91474 0.71360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.12 10.28 71.98 0.74 -0.38 16 2 C 0.04 0.45 6.38 71.98 0.46 0.91 16 3 O -0.26 -5.34 10.19 -64.14 -0.65 -5.99 16 4 C 0.38 9.12 8.98 130.43 1.17 10.29 16 5 N -0.49 -14.18 11.10 -419.39 -4.65 -18.83 16 6 C -0.08 -2.14 6.99 40.31 0.28 -1.85 16 7 C 0.60 18.43 7.78 86.65 0.67 19.10 16 8 O -0.56 -18.57 16.55 -4.10 -0.07 -18.64 16 9 N -0.70 -21.60 3.59 -445.71 -1.60 -23.20 16 10 C 0.16 5.13 2.21 45.02 0.10 5.23 16 11 H 0.10 2.81 7.57 -2.39 -0.02 2.79 16 12 C -0.14 -5.08 5.77 30.67 0.18 -4.90 16 13 C 0.13 5.75 3.94 86.36 0.34 6.09 16 14 N -0.62 -29.15 2.77 -699.11 -1.94 -31.09 16 15 C -0.24 -13.77 10.04 84.03 0.84 -12.93 16 16 H 0.06 3.68 8.06 -2.91 -0.02 3.65 16 17 C -0.03 -1.78 5.23 84.86 0.44 -1.34 16 18 N -0.95 -60.80 13.97 21.65 0.30 -60.50 16 19 Si 0.94 48.79 24.35 68.60 1.67 50.46 16 20 H -0.28 -14.19 6.62 99.48 0.66 -13.53 16 21 H -0.31 -16.23 7.11 99.48 0.71 -15.52 16 22 H -0.27 -13.62 6.64 99.48 0.66 -12.96 16 23 C 0.15 5.60 5.50 86.36 0.48 6.08 16 24 C -0.11 -3.23 2.67 -10.72 -0.03 -3.26 16 25 H 0.09 2.65 8.14 -2.39 -0.02 2.63 16 26 C -0.13 -3.13 9.05 71.98 0.65 -2.48 16 27 C 0.03 0.60 11.93 67.28 0.80 1.40 16 28 O -0.21 -4.05 10.20 18.78 0.19 -3.85 16 29 H 0.11 0.26 8.14 -2.38 -0.02 0.24 16 30 H 0.06 0.60 8.14 -2.38 -0.02 0.58 16 31 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16 32 H 0.09 0.69 8.14 -2.38 -0.02 0.68 16 33 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 34 H 0.41 13.13 6.45 -92.71 -0.60 12.53 16 35 H 0.06 2.32 8.14 -2.39 -0.02 2.30 16 36 H 0.08 2.78 8.14 -2.39 -0.02 2.76 16 37 H 0.05 2.26 4.49 -2.39 -0.01 2.25 16 38 H 0.02 1.00 6.67 -2.39 -0.02 0.99 16 39 H 0.26 15.87 8.31 -92.71 -0.77 15.10 16 40 H 0.06 2.44 7.93 -2.39 -0.02 2.42 16 41 H 0.03 1.09 6.64 -2.39 -0.02 1.07 16 42 H 0.05 1.27 7.54 -2.39 -0.02 1.25 16 43 H 0.07 1.46 8.14 -2.38 -0.02 1.44 16 44 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 45 H 0.27 2.96 8.06 -2.91 -0.02 2.94 16 Total: -1.00 -74.13 362.98 0.70 -73.43 By element: Atomic # 1 Polarization: 15.93 SS G_CDS: 0.32 Total: 16.25 kcal Atomic # 6 Polarization: 14.84 SS G_CDS: 7.13 Total: 21.97 kcal Atomic # 7 Polarization: -125.73 SS G_CDS: -7.89 Total: -133.62 kcal Atomic # 8 Polarization: -27.96 SS G_CDS: -0.53 Total: -28.49 kcal Atomic # 14 Polarization: 48.79 SS G_CDS: 1.67 Total: 50.46 kcal Total: -74.13 0.70 -73.43 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000942271304.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.833 kcal (2) G-P(sol) polarization free energy of solvation -74.127 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.293 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.702 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.425 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.592 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds