Wall clock time and date at job start Tue Mar 31 2020 14:45:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 O 1.42902 * 109.47195 * 2 1 4 4 C 1.35728 * 117.00517 * 180.02562 * 3 2 1 5 5 C 1.41852 * 126.79245 * 180.02562 * 4 3 2 6 6 C 1.36667 * 103.81339 * 179.97438 * 5 4 3 7 7 C 1.47538 * 126.87568 * 179.97438 * 6 5 4 8 8 O 1.21581 * 120.00289 * 0.02562 * 7 6 5 9 9 N 1.34780 * 119.99452 * 179.97438 * 7 6 5 10 10 C 1.46498 * 119.99567 * 180.02562 * 9 7 6 11 11 H 1.09005 * 109.46332 * 35.00373 * 10 9 7 12 12 C 1.53047 * 109.45092 * 275.03710 * 10 9 7 13 13 C 1.53192 * 109.31181 * 178.62403 * 12 10 9 14 14 N 1.46923 * 108.77639 * 54.63577 * 13 12 10 15 15 C 1.36932 * 120.62894 * 126.41577 * 14 13 12 16 16 H 1.08006 * 120.00215 * 207.65571 * 15 14 13 17 17 C 1.38817 * 120.00380 * 27.65361 * 15 14 13 18 18 N 1.31611 * 119.99818 * 17.38150 * 17 15 14 19 19 Si 1.86796 * 119.99917 * 197.37775 * 17 15 14 20 20 H 1.48492 * 109.47650 * 0.02562 * 19 17 15 21 21 H 1.48503 * 109.46930 * 120.00241 * 19 17 15 22 22 H 1.48499 * 109.47116 * 239.99735 * 19 17 15 23 23 C 1.46929 * 118.73673 * 306.38583 * 14 13 12 24 24 C 1.53046 * 109.45958 * 154.97764 * 10 9 7 25 25 H 1.08995 * 109.49504 * 61.41717 * 24 10 9 26 26 C 1.53000 * 109.49283 * 301.35390 * 24 10 9 27 27 O 1.34663 * 106.24077 * 0.23691 * 6 5 4 28 28 N 1.20871 * 111.63092 * 359.56771 * 27 6 5 29 29 H 1.08999 * 109.47235 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.47155 * 299.99901 * 1 2 3 31 31 H 1.08998 * 109.47430 * 59.99863 * 1 2 3 32 32 H 1.08995 * 109.47320 * 240.00301 * 2 1 3 33 33 H 1.09000 * 109.47405 * 119.99586 * 2 1 3 34 34 H 1.08006 * 128.09007 * 359.97438 * 5 4 3 35 35 H 0.96999 * 120.00442 * 0.02562 * 9 7 6 36 36 H 1.08995 * 109.49547 * 298.57127 * 12 10 9 37 37 H 1.08995 * 109.49586 * 58.67562 * 12 10 9 38 38 H 1.09006 * 109.58366 * 294.84481 * 13 12 10 39 39 H 1.09002 * 109.58578 * 174.42367 * 13 12 10 40 40 H 0.97002 * 120.00267 * 179.97438 * 18 17 15 41 41 H 1.08990 * 109.59000 * 293.82275 * 23 14 13 42 42 H 1.08999 * 109.58223 * 173.39870 * 23 14 13 43 43 H 1.08999 * 109.47023 * 60.00579 * 26 24 10 44 44 H 1.09008 * 109.46492 * 179.97438 * 26 24 10 45 45 H 1.09001 * 109.47259 * 299.99651 * 26 24 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3518 1.5252 -0.0005 5 6 4.0452 2.7628 -0.0001 6 6 5.3625 2.3988 -0.0004 7 6 6.5302 3.3006 -0.0007 8 8 6.3678 4.5055 -0.0003 9 7 7.7769 2.7886 -0.0004 10 6 8.9364 3.6840 -0.0001 11 1 8.7092 4.5723 0.5894 12 6 9.2627 4.0958 -1.4376 13 6 10.4539 5.0590 -1.4307 14 7 11.5704 4.4252 -0.7164 15 6 12.8024 4.3161 -1.3040 16 1 13.4658 3.5116 -1.0225 17 6 13.1989 5.2396 -2.2616 18 7 12.5700 6.3910 -2.3656 19 14 14.6252 4.8480 -3.4026 20 1 15.1582 3.4992 -3.0840 21 1 14.1540 4.8736 -4.8107 22 1 15.6967 5.8599 -3.2208 23 6 11.3401 3.9112 0.6406 24 6 10.1390 2.9607 0.6105 25 1 10.3821 2.0860 0.0073 26 6 9.7999 2.5200 2.0359 27 8 5.3812 1.0523 -0.0062 28 7 4.2639 0.5912 -0.0009 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 3.6292 3.7595 0.0003 35 1 7.9065 1.8273 -0.0004 36 1 9.5142 3.2104 -2.0214 37 1 8.3977 4.5901 -1.8796 38 1 10.1737 5.9829 -0.9247 39 1 10.7529 5.2776 -2.4558 40 1 12.8473 7.0365 -3.0344 41 1 11.1323 4.7414 1.3155 42 1 12.2239 3.3724 0.9821 43 1 8.9437 1.8458 2.0137 44 1 10.6566 2.0045 2.4702 45 1 9.5580 3.3951 2.6390 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000942521255.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:45:10 Heat of formation + Delta-G solvation = 9.273021 kcal Electronic energy + Delta-G solvation = -27400.795176 eV Core-core repulsion = 23422.969691 eV Total energy + Delta-G solvation = -3977.825485 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -45.21917 -39.94346 -39.33546 -37.75549 -34.73320 -33.78088 -32.91549 -32.10526 -31.51560 -31.18411 -29.82558 -26.02938 -25.60913 -24.46081 -23.65827 -23.24698 -21.91875 -21.04664 -20.76411 -19.80947 -18.64859 -18.21745 -17.21617 -16.79482 -16.32850 -16.17481 -16.03663 -15.01248 -14.82751 -14.73159 -14.29644 -13.91633 -13.80395 -13.60421 -13.49458 -13.34718 -13.12717 -12.84064 -12.69797 -12.32279 -12.15613 -11.62961 -11.56923 -11.52514 -11.33993 -11.10322 -10.87811 -10.68286 -10.44533 -10.29144 -10.24501 -10.09439 -10.03242 -9.82570 -9.62582 -9.56260 -8.85902 -8.45790 -6.71261 -5.80331 -3.22855 0.56357 1.82947 2.26358 2.42348 2.92941 3.27843 3.37038 3.44939 3.46752 3.80735 4.39965 4.45016 4.47970 4.54844 4.72416 4.78139 4.91437 5.07402 5.17435 5.27268 5.29449 5.37738 5.42714 5.47389 5.55058 5.55248 5.83617 5.93748 6.05554 6.16801 6.20967 6.26262 6.41017 6.54088 6.61759 6.63582 6.73214 6.79107 6.92768 7.32057 7.38574 7.65556 7.78761 7.79103 8.01424 8.42824 9.19023 9.82362 10.38366 11.28264 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.027511 B = 0.002353 C = 0.002302 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1017.513586 B =11896.521172 C =12161.434755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.057 3.943 3 O -0.281 6.281 4 C 0.207 3.793 5 C -0.159 4.159 6 C -0.050 4.050 7 C 0.599 3.401 8 O -0.507 6.507 9 N -0.702 5.702 10 C 0.155 3.845 11 H 0.088 0.912 12 C -0.149 4.149 13 C 0.173 3.827 14 N -0.592 5.592 15 C -0.254 4.254 16 H 0.067 0.933 17 C 0.002 3.998 18 N -0.900 5.900 19 Si 0.901 3.099 20 H -0.278 1.278 21 H -0.289 1.289 22 H -0.290 1.290 23 C 0.155 3.845 24 C -0.115 4.115 25 H 0.074 0.926 26 C -0.144 4.144 27 O 0.115 5.885 28 N -0.393 5.393 29 H 0.082 0.918 30 H 0.068 0.932 31 H 0.068 0.932 32 H 0.067 0.933 33 H 0.067 0.933 34 H 0.190 0.810 35 H 0.403 0.597 36 H 0.058 0.942 37 H 0.056 0.944 38 H 0.022 0.978 39 H 0.091 0.909 40 H 0.254 0.746 41 H 0.022 0.978 42 H 0.059 0.941 43 H 0.047 0.953 44 H 0.055 0.945 45 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.508 -12.509 6.332 24.023 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.018 4.018 3 O -0.188 6.188 4 C 0.010 3.990 5 C -0.182 4.182 6 C -0.117 4.117 7 C 0.381 3.619 8 O -0.382 6.382 9 N -0.351 5.351 10 C 0.053 3.947 11 H 0.106 0.894 12 C -0.189 4.189 13 C 0.047 3.953 14 N -0.315 5.315 15 C -0.383 4.383 16 H 0.085 0.915 17 C -0.196 4.196 18 N -0.545 5.545 19 Si 0.731 3.269 20 H -0.203 1.203 21 H -0.216 1.216 22 H -0.217 1.217 23 C 0.028 3.972 24 C -0.136 4.136 25 H 0.092 0.908 26 C -0.202 4.202 27 O 0.050 5.950 28 N -0.117 5.117 29 H 0.101 0.899 30 H 0.087 0.913 31 H 0.087 0.913 32 H 0.085 0.915 33 H 0.085 0.915 34 H 0.207 0.793 35 H 0.238 0.762 36 H 0.077 0.923 37 H 0.074 0.926 38 H 0.040 0.960 39 H 0.109 0.891 40 H 0.064 0.936 41 H 0.039 0.961 42 H 0.078 0.922 43 H 0.066 0.934 44 H 0.074 0.926 45 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -19.835 -12.604 6.219 24.310 hybrid contribution 0.430 -0.090 -0.683 0.812 sum -19.405 -12.694 5.537 23.840 Atomic orbital electron populations 1.21799 0.92075 1.03265 1.03754 1.22848 0.95975 0.80484 1.02496 1.86223 1.12965 1.30328 1.89273 1.21842 0.85844 0.90503 1.00826 1.22191 0.90141 0.99280 1.06548 1.24299 0.96859 0.84178 1.06322 1.16500 0.81149 0.86091 0.78138 1.90907 1.84704 1.12704 1.49862 1.46260 1.05211 1.11268 1.72403 1.21256 0.82603 0.92378 0.98491 0.89428 1.22617 1.00478 1.01475 0.94378 1.20779 0.83900 0.91046 0.99621 1.44117 1.07722 1.68821 1.10798 1.19208 0.93194 1.07070 1.18854 0.91543 1.25050 0.98322 0.94646 1.01625 1.70038 1.42999 1.05913 1.35523 0.86240 0.81949 0.77755 0.80917 1.20258 1.21571 1.21742 1.20896 0.94004 0.94108 0.88239 1.21996 0.96084 1.00031 0.95486 0.90776 1.21796 1.00782 1.00931 0.96688 1.84944 1.22833 1.18723 1.68529 1.73992 0.90449 1.22148 1.25125 0.89901 0.91293 0.91277 0.91486 0.91511 0.79275 0.76243 0.92336 0.92581 0.95996 0.89074 0.93605 0.96062 0.92236 0.93373 0.92565 0.92784 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.79 10.28 37.15 0.38 -0.40 16 2 C 0.06 0.44 6.38 37.15 0.24 0.68 16 3 O -0.28 -2.97 10.21 -18.89 -0.19 -3.17 16 4 C 0.21 2.43 8.00 -16.72 -0.13 2.29 16 5 C -0.16 -1.83 10.97 -38.77 -0.43 -2.26 16 6 C -0.05 -0.61 7.29 -36.36 -0.26 -0.88 16 7 C 0.60 8.44 7.78 -12.47 -0.10 8.35 16 8 O -0.51 -8.80 16.57 5.29 0.09 -8.71 16 9 N -0.70 -9.25 4.36 -54.80 -0.24 -9.49 16 10 C 0.16 2.50 1.88 -67.88 -0.13 2.38 16 11 H 0.09 1.57 7.58 -51.93 -0.39 1.18 16 12 C -0.15 -2.81 5.65 -26.61 -0.15 -2.96 16 13 C 0.17 4.05 5.31 -3.71 -0.02 4.03 16 14 N -0.59 -14.26 2.99 -172.32 -0.52 -14.77 16 15 C -0.25 -6.75 9.59 -15.06 -0.14 -6.90 16 16 H 0.07 1.73 7.89 -52.48 -0.41 1.32 16 17 C 0.00 0.06 4.91 -17.43 -0.09 -0.02 16 18 N -0.90 -25.84 11.19 55.49 0.62 -25.22 16 19 Si 0.90 21.36 29.59 -169.99 -5.03 16.33 16 20 H -0.28 -6.41 7.11 56.52 0.40 -6.00 16 21 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 22 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 23 C 0.15 3.03 5.80 -3.71 -0.02 3.01 16 24 C -0.12 -1.78 2.46 -90.50 -0.22 -2.01 16 25 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 26 C -0.14 -1.80 9.03 37.16 0.34 -1.46 16 27 O 0.12 1.36 11.03 15.50 0.17 1.53 16 28 N -0.39 -4.76 11.50 30.47 0.35 -4.41 16 29 H 0.08 0.28 8.14 -51.93 -0.42 -0.15 16 30 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 34 H 0.19 1.90 8.06 -52.48 -0.42 1.48 16 35 H 0.40 4.35 8.13 -40.82 -0.33 4.02 16 36 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 37 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 38 H 0.02 0.55 8.14 -51.93 -0.42 0.12 16 39 H 0.09 2.41 6.04 -51.93 -0.31 2.09 16 40 H 0.25 7.05 8.31 -40.82 -0.34 6.71 16 41 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 42 H 0.06 1.14 7.93 -51.93 -0.41 0.73 16 43 H 0.05 0.52 7.36 -51.93 -0.38 0.14 16 44 H 0.06 0.65 8.14 -51.92 -0.42 0.23 16 45 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 LS Contribution 373.07 15.07 5.62 5.62 Total: -1.00 -30.57 373.07 -6.74 -37.31 By element: Atomic # 1 Polarization: 8.02 SS G_CDS: -6.88 Total: 1.15 kcal Atomic # 6 Polarization: 4.58 SS G_CDS: -0.74 Total: 3.84 kcal Atomic # 7 Polarization: -54.11 SS G_CDS: 0.22 Total: -53.90 kcal Atomic # 8 Polarization: -10.42 SS G_CDS: 0.07 Total: -10.35 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.03 Total: 16.33 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -30.57 -6.74 -37.31 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000942521255.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.584 kcal (2) G-P(sol) polarization free energy of solvation -30.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.014 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.741 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.311 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.273 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds