Wall clock time and date at job start Tue Mar 31 2020 14:45:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 O 1.42902 * 109.47195 * 2 1 4 4 C 1.35728 * 117.00517 * 180.02562 * 3 2 1 5 5 C 1.41852 * 126.79245 * 180.02562 * 4 3 2 6 6 C 1.36667 * 103.81339 * 179.97438 * 5 4 3 7 7 C 1.47538 * 126.87568 * 179.97438 * 6 5 4 8 8 O 1.21581 * 120.00289 * 0.02562 * 7 6 5 9 9 N 1.34780 * 119.99452 * 179.97438 * 7 6 5 10 10 C 1.46498 * 119.99567 * 180.02562 * 9 7 6 11 11 H 1.09005 * 109.46332 * 35.00373 * 10 9 7 12 12 C 1.53047 * 109.45092 * 275.03710 * 10 9 7 13 13 C 1.53192 * 109.31181 * 178.62403 * 12 10 9 14 14 N 1.46923 * 108.77639 * 54.63577 * 13 12 10 15 15 C 1.36932 * 120.62894 * 126.41577 * 14 13 12 16 16 H 1.08006 * 120.00215 * 207.65571 * 15 14 13 17 17 C 1.38817 * 120.00380 * 27.65361 * 15 14 13 18 18 N 1.31611 * 119.99818 * 17.38150 * 17 15 14 19 19 Si 1.86796 * 119.99917 * 197.37775 * 17 15 14 20 20 H 1.48492 * 109.47650 * 0.02562 * 19 17 15 21 21 H 1.48503 * 109.46930 * 120.00241 * 19 17 15 22 22 H 1.48499 * 109.47116 * 239.99735 * 19 17 15 23 23 C 1.46929 * 118.73673 * 306.38583 * 14 13 12 24 24 C 1.53046 * 109.45958 * 154.97764 * 10 9 7 25 25 H 1.08995 * 109.49504 * 61.41717 * 24 10 9 26 26 C 1.53000 * 109.49283 * 301.35390 * 24 10 9 27 27 O 1.34663 * 106.24077 * 0.23691 * 6 5 4 28 28 N 1.20871 * 111.63092 * 359.56771 * 27 6 5 29 29 H 1.08999 * 109.47235 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.47155 * 299.99901 * 1 2 3 31 31 H 1.08998 * 109.47430 * 59.99863 * 1 2 3 32 32 H 1.08995 * 109.47320 * 240.00301 * 2 1 3 33 33 H 1.09000 * 109.47405 * 119.99586 * 2 1 3 34 34 H 1.08006 * 128.09007 * 359.97438 * 5 4 3 35 35 H 0.96999 * 120.00442 * 0.02562 * 9 7 6 36 36 H 1.08995 * 109.49547 * 298.57127 * 12 10 9 37 37 H 1.08995 * 109.49586 * 58.67562 * 12 10 9 38 38 H 1.09006 * 109.58366 * 294.84481 * 13 12 10 39 39 H 1.09002 * 109.58578 * 174.42367 * 13 12 10 40 40 H 0.97002 * 120.00267 * 179.97438 * 18 17 15 41 41 H 1.08990 * 109.59000 * 293.82275 * 23 14 13 42 42 H 1.08999 * 109.58223 * 173.39870 * 23 14 13 43 43 H 1.08999 * 109.47023 * 60.00579 * 26 24 10 44 44 H 1.09008 * 109.46492 * 179.97438 * 26 24 10 45 45 H 1.09001 * 109.47259 * 299.99651 * 26 24 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3518 1.5252 -0.0005 5 6 4.0452 2.7628 -0.0001 6 6 5.3625 2.3988 -0.0004 7 6 6.5302 3.3006 -0.0007 8 8 6.3678 4.5055 -0.0003 9 7 7.7769 2.7886 -0.0004 10 6 8.9364 3.6840 -0.0001 11 1 8.7092 4.5723 0.5894 12 6 9.2627 4.0958 -1.4376 13 6 10.4539 5.0590 -1.4307 14 7 11.5704 4.4252 -0.7164 15 6 12.8024 4.3161 -1.3040 16 1 13.4658 3.5116 -1.0225 17 6 13.1989 5.2396 -2.2616 18 7 12.5700 6.3910 -2.3656 19 14 14.6252 4.8480 -3.4026 20 1 15.1582 3.4992 -3.0840 21 1 14.1540 4.8736 -4.8107 22 1 15.6967 5.8599 -3.2208 23 6 11.3401 3.9112 0.6406 24 6 10.1390 2.9607 0.6105 25 1 10.3821 2.0860 0.0073 26 6 9.7999 2.5200 2.0359 27 8 5.3812 1.0523 -0.0062 28 7 4.2639 0.5912 -0.0009 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 3.6292 3.7595 0.0003 35 1 7.9065 1.8273 -0.0004 36 1 9.5142 3.2104 -2.0214 37 1 8.3977 4.5901 -1.8796 38 1 10.1737 5.9829 -0.9247 39 1 10.7529 5.2776 -2.4558 40 1 12.8473 7.0365 -3.0344 41 1 11.1323 4.7414 1.3155 42 1 12.2239 3.3724 0.9821 43 1 8.9437 1.8458 2.0137 44 1 10.6566 2.0045 2.4702 45 1 9.5580 3.3951 2.6390 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000942521255.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:45:09 Heat of formation + Delta-G solvation = -11.643148 kcal Electronic energy + Delta-G solvation = -27401.702169 eV Core-core repulsion = 23422.969691 eV Total energy + Delta-G solvation = -3978.732478 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -46.14346 -41.19804 -40.10898 -39.23530 -36.30324 -34.66033 -34.33912 -33.14147 -32.88236 -32.16491 -31.45396 -27.38648 -27.25137 -25.56554 -24.56894 -24.31121 -23.21438 -22.62008 -21.77198 -21.17699 -19.88086 -19.13372 -18.66623 -18.05432 -17.48259 -17.11216 -17.01593 -16.73628 -16.04471 -15.82509 -15.57286 -15.49338 -15.15936 -14.75710 -14.71924 -14.52920 -14.20243 -14.08986 -13.58551 -13.54982 -13.05503 -13.00083 -12.97466 -12.70384 -12.61085 -12.40324 -12.26309 -12.14224 -12.06190 -12.01454 -11.69770 -11.57819 -11.49064 -11.15737 -11.04696 -10.56126 -10.47016 -10.12304 -8.68886 -7.85641 -5.30705 -0.41729 0.91884 1.37269 1.47709 1.48688 1.50468 1.60567 1.82755 2.22635 2.53142 2.92670 3.30275 3.56275 3.64027 3.73016 3.81560 3.90720 3.92419 4.04051 4.07914 4.18581 4.26665 4.40992 4.53965 4.63897 4.71580 4.75171 4.78603 4.85440 4.88297 4.91898 5.04845 5.11034 5.15425 5.16659 5.31827 5.41270 5.45198 5.55535 5.66926 5.73868 5.85168 6.25906 6.40603 6.84893 6.93263 7.15819 7.87000 8.38777 9.21343 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.027511 B = 0.002353 C = 0.002302 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1017.513586 B =11896.521172 C =12161.434755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.049 3.951 3 O -0.289 6.289 4 C 0.205 3.795 5 C -0.154 4.154 6 C -0.053 4.053 7 C 0.607 3.393 8 O -0.542 6.542 9 N -0.688 5.688 10 C 0.168 3.832 11 H 0.070 0.930 12 C -0.135 4.135 13 C 0.181 3.819 14 N -0.609 5.609 15 C -0.257 4.257 16 H 0.073 0.927 17 C -0.054 4.054 18 N -0.937 5.937 19 Si 0.966 3.034 20 H -0.263 1.263 21 H -0.293 1.293 22 H -0.295 1.295 23 C 0.149 3.851 24 C -0.101 4.101 25 H 0.082 0.918 26 C -0.137 4.137 27 O 0.122 5.878 28 N -0.397 5.397 29 H 0.104 0.896 30 H 0.069 0.931 31 H 0.068 0.932 32 H 0.067 0.933 33 H 0.069 0.931 34 H 0.202 0.798 35 H 0.419 0.581 36 H 0.063 0.937 37 H 0.053 0.947 38 H -0.007 1.007 39 H 0.056 0.944 40 H 0.249 0.751 41 H 0.014 0.986 42 H 0.065 0.935 43 H 0.070 0.930 44 H 0.069 0.931 45 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.589 -15.149 7.111 26.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.025 4.025 3 O -0.196 6.196 4 C 0.008 3.992 5 C -0.177 4.177 6 C -0.119 4.119 7 C 0.390 3.610 8 O -0.419 6.419 9 N -0.338 5.338 10 C 0.064 3.936 11 H 0.088 0.912 12 C -0.175 4.175 13 C 0.054 3.946 14 N -0.332 5.332 15 C -0.388 4.388 16 H 0.090 0.910 17 C -0.249 4.249 18 N -0.583 5.583 19 Si 0.794 3.206 20 H -0.187 1.187 21 H -0.220 1.220 22 H -0.222 1.222 23 C 0.024 3.976 24 C -0.121 4.121 25 H 0.100 0.900 26 C -0.195 4.195 27 O 0.055 5.945 28 N -0.122 5.122 29 H 0.123 0.877 30 H 0.088 0.912 31 H 0.087 0.913 32 H 0.086 0.914 33 H 0.087 0.913 34 H 0.219 0.781 35 H 0.257 0.743 36 H 0.082 0.918 37 H 0.072 0.928 38 H 0.011 0.989 39 H 0.075 0.925 40 H 0.058 0.942 41 H 0.031 0.969 42 H 0.083 0.917 43 H 0.089 0.911 44 H 0.088 0.912 45 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -20.939 -15.314 7.028 26.877 hybrid contribution 0.694 0.704 -0.878 1.322 sum -20.246 -14.610 6.150 25.713 Atomic orbital electron populations 1.21831 0.90102 1.04690 1.03764 1.23124 0.97534 0.79244 1.02621 1.86242 1.12231 1.32098 1.89040 1.21938 0.86387 0.90358 1.00552 1.22412 0.89972 0.99925 1.05352 1.23818 0.96181 0.84321 1.07596 1.16561 0.81537 0.85768 0.77103 1.90901 1.85266 1.14384 1.51376 1.45936 1.04175 1.11678 1.72046 1.20870 0.83986 0.92592 0.96157 0.91152 1.22365 0.98184 1.00321 0.96624 1.20499 0.85551 0.91336 0.97183 1.44361 1.07186 1.69003 1.12682 1.19574 0.93962 1.06651 1.18577 0.90957 1.25817 1.01086 0.94629 1.03396 1.70199 1.44881 1.06950 1.36278 0.85227 0.78901 0.77876 0.78565 1.18726 1.21975 1.22208 1.21085 0.96201 0.94585 0.85775 1.21787 0.93658 0.98788 0.97900 0.89991 1.21746 1.02327 1.01339 0.94047 1.84942 1.22756 1.18244 1.68521 1.73973 0.90620 1.22295 1.25299 0.87747 0.91201 0.91326 0.91449 0.91274 0.78125 0.74336 0.91801 0.92816 0.98852 0.92545 0.94209 0.96851 0.91663 0.91069 0.91167 0.93141 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.22 10.28 71.98 0.74 -0.48 16 2 C 0.05 0.67 6.38 71.98 0.46 1.13 16 3 O -0.29 -5.65 10.21 -90.51 -0.92 -6.58 16 4 C 0.20 4.44 8.00 85.78 0.69 5.12 16 5 C -0.15 -3.30 10.97 22.80 0.25 -3.05 16 6 C -0.05 -1.19 7.29 24.36 0.18 -1.02 16 7 C 0.61 16.23 7.78 86.70 0.67 16.90 16 8 O -0.54 -18.54 16.57 -3.97 -0.07 -18.61 16 9 N -0.69 -16.75 4.36 -445.55 -1.94 -18.69 16 10 C 0.17 5.25 1.88 45.02 0.08 5.33 16 11 H 0.07 2.51 7.58 -2.38 -0.02 2.49 16 12 C -0.13 -5.10 5.65 30.67 0.17 -4.92 16 13 C 0.18 8.79 5.31 86.36 0.46 9.25 16 14 N -0.61 -29.72 2.99 -699.10 -2.09 -31.81 16 15 C -0.26 -13.79 9.59 84.04 0.81 -12.99 16 16 H 0.07 3.72 7.89 -2.91 -0.02 3.70 16 17 C -0.05 -3.00 4.91 84.86 0.42 -2.59 16 18 N -0.94 -55.73 11.19 21.65 0.24 -55.49 16 19 Si 0.97 44.51 29.59 68.60 2.03 46.54 16 20 H -0.26 -11.37 7.11 99.48 0.71 -10.66 16 21 H -0.29 -13.55 7.11 99.48 0.71 -12.85 16 22 H -0.29 -13.69 7.11 99.48 0.71 -12.99 16 23 C 0.15 5.77 5.80 86.36 0.50 6.27 16 24 C -0.10 -2.93 2.46 -10.71 -0.03 -2.95 16 25 H 0.08 2.32 8.14 -2.39 -0.02 2.30 16 26 C -0.14 -2.99 9.03 71.98 0.65 -2.34 16 27 O 0.12 2.59 11.03 65.64 0.72 3.31 16 28 N -0.40 -8.85 11.50 -172.00 -1.98 -10.83 16 29 H 0.10 0.42 8.14 -2.39 -0.02 0.40 16 30 H 0.07 0.58 8.14 -2.38 -0.02 0.56 16 31 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 32 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 33 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 34 H 0.20 3.74 8.06 -2.91 -0.02 3.71 16 35 H 0.42 7.74 8.13 -92.71 -0.75 6.98 16 36 H 0.06 2.34 8.14 -2.39 -0.02 2.33 16 37 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 38 H -0.01 -0.35 8.14 -2.38 -0.02 -0.37 16 39 H 0.06 3.12 6.04 -2.39 -0.01 3.11 16 40 H 0.25 14.36 8.31 -92.71 -0.77 13.59 16 41 H 0.01 0.54 8.14 -2.39 -0.02 0.52 16 42 H 0.06 2.42 7.93 -2.39 -0.02 2.40 16 43 H 0.07 1.26 7.36 -2.39 -0.02 1.24 16 44 H 0.07 1.38 8.14 -2.38 -0.02 1.36 16 45 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 Total: -1.00 -67.41 373.07 2.29 -65.12 By element: Atomic # 1 Polarization: 13.09 SS G_CDS: 0.25 Total: 13.34 kcal Atomic # 6 Polarization: 7.63 SS G_CDS: 6.05 Total: 13.68 kcal Atomic # 7 Polarization: -111.05 SS G_CDS: -5.77 Total: -116.82 kcal Atomic # 8 Polarization: -21.60 SS G_CDS: -0.27 Total: -21.87 kcal Atomic # 14 Polarization: 44.51 SS G_CDS: 2.03 Total: 46.54 kcal Total: -67.41 2.29 -65.12 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000942521255.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.480 kcal (2) G-P(sol) polarization free energy of solvation -67.412 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.932 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.289 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.123 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.643 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds