Wall clock time and date at job start Tue Mar 31 2020 14:45:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 O 1.42900 * 109.46988 * 2 1 4 4 C 1.35733 * 117.00026 * 180.02562 * 3 2 1 5 5 C 1.41856 * 126.78557 * 179.97438 * 4 3 2 6 6 C 1.36656 * 103.81100 * 180.02562 * 5 4 3 7 7 C 1.47543 * 126.87968 * 179.97438 * 6 5 4 8 8 O 1.21579 * 120.00048 * 0.02562 * 7 6 5 9 9 N 1.34782 * 120.00213 * 179.97438 * 7 6 5 10 10 C 1.46493 * 120.00356 * 179.97438 * 9 7 6 11 11 H 1.09004 * 109.44882 * 324.97076 * 10 9 7 12 12 C 1.53038 * 109.45749 * 84.93362 * 10 9 7 13 13 C 1.53193 * 109.31180 * 58.66013 * 12 10 9 14 14 N 1.46922 * 108.77778 * 54.63249 * 13 12 10 15 15 C 1.36934 * 120.63331 * 126.41481 * 14 13 12 16 16 H 1.07996 * 120.00228 * 207.66535 * 15 14 13 17 17 C 1.38812 * 119.99808 * 27.65448 * 15 14 13 18 18 N 1.31621 * 119.99877 * 17.38718 * 17 15 14 19 19 Si 1.86800 * 119.99995 * 197.37866 * 17 15 14 20 20 H 1.48493 * 109.47269 * 0.02562 * 19 17 15 21 21 H 1.48500 * 109.46942 * 120.00539 * 19 17 15 22 22 H 1.48504 * 109.47111 * 240.00270 * 19 17 15 23 23 C 1.46931 * 118.73691 * 306.39365 * 14 13 12 24 24 C 1.53037 * 109.46548 * 205.00290 * 10 9 7 25 25 H 1.08993 * 109.49938 * 181.39158 * 24 10 9 26 26 C 1.53006 * 109.52337 * 61.31350 * 24 10 9 27 27 O 1.34660 * 106.24478 * 0.24047 * 6 5 4 28 28 N 1.20875 * 111.62769 * 359.56154 * 27 6 5 29 29 H 1.08998 * 109.47388 * 60.00546 * 1 2 3 30 30 H 1.08999 * 109.47201 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.47770 * 300.00303 * 1 2 3 32 32 H 1.08995 * 109.47344 * 240.00039 * 2 1 3 33 33 H 1.08998 * 109.47388 * 119.99454 * 2 1 3 34 34 H 1.08005 * 128.09243 * 0.03826 * 5 4 3 35 35 H 0.96997 * 119.99477 * 0.02562 * 9 7 6 36 36 H 1.08997 * 109.50157 * 298.70685 * 12 10 9 37 37 H 1.09006 * 109.52481 * 178.62311 * 12 10 9 38 38 H 1.09000 * 109.58324 * 294.84259 * 13 12 10 39 39 H 1.09003 * 109.58820 * 174.42071 * 13 12 10 40 40 H 0.97001 * 119.99724 * 180.02562 * 18 17 15 41 41 H 1.08996 * 109.58583 * 293.81694 * 23 14 13 42 42 H 1.09002 * 109.70041 * 173.46010 * 23 14 13 43 43 H 1.09009 * 109.46960 * 300.08787 * 26 24 10 44 44 H 1.08998 * 109.46792 * 60.07813 * 26 24 10 45 45 H 1.08991 * 109.47269 * 180.08584 * 26 24 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0062 1.3473 0.0000 4 6 3.3519 1.5252 -0.0005 5 6 4.0451 2.7628 -0.0012 6 6 5.3623 2.3989 -0.0021 7 6 6.5301 3.3007 -0.0036 8 8 6.3677 4.5056 -0.0036 9 7 7.7769 2.7887 -0.0039 10 6 8.9364 3.6841 -0.0059 11 1 8.7088 4.5713 -0.5969 12 6 9.2631 4.0983 1.4306 13 6 9.5486 2.8466 2.2664 14 7 10.6066 2.0689 1.6072 15 6 11.7318 1.6990 2.2943 16 1 12.6609 1.5446 1.7659 17 6 11.6782 1.5228 3.6702 18 7 10.5162 1.3709 4.2694 19 14 13.2553 1.5010 4.6711 20 1 14.4179 1.6917 3.7672 21 1 13.2217 2.5978 5.6717 22 1 13.3799 0.1968 5.3702 23 6 10.4341 1.6953 0.1967 24 6 10.1388 2.9600 -0.6158 25 1 11.0081 3.6171 -0.5950 26 6 9.8240 2.5753 -2.0629 27 8 5.3811 1.0524 -0.0075 28 7 4.2639 0.5912 -0.0011 29 1 -0.3634 0.5137 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3635 0.5139 0.8900 32 1 1.8933 -0.5138 -0.8899 33 1 1.8933 -0.5137 0.8900 34 1 3.6291 3.7595 -0.0007 35 1 7.9064 1.8275 -0.0035 36 1 8.4151 4.6345 1.8565 37 1 10.1406 4.7450 1.4327 38 1 8.6440 2.2431 2.3411 39 1 9.8779 3.1400 3.2632 40 1 10.4788 1.2482 5.2309 41 1 9.6018 0.9978 0.1026 42 1 11.3464 1.2277 -0.1738 43 1 8.9544 1.9182 -2.0832 44 1 9.6127 3.4753 -2.6403 45 1 10.6802 2.0583 -2.4959 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000942521256.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:45:13 Heat of formation + Delta-G solvation = 11.670298 kcal Electronic energy + Delta-G solvation = -28030.191171 eV Core-core repulsion = 24052.469640 eV Total energy + Delta-G solvation = -3977.721531 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -45.05724 -39.98687 -39.19954 -37.76970 -34.40800 -33.64102 -32.80985 -31.97228 -31.39986 -31.08859 -29.97054 -26.02516 -25.50847 -24.55538 -23.53697 -23.21276 -21.97401 -21.17565 -20.83471 -19.13717 -18.68162 -18.05318 -17.06034 -16.79687 -16.19438 -16.07096 -15.60476 -15.00795 -14.79060 -14.68228 -14.16735 -14.00275 -13.76688 -13.63784 -13.38759 -13.36284 -13.02558 -12.98226 -12.60258 -12.19858 -12.16814 -11.53306 -11.48827 -11.44560 -11.39989 -11.11632 -10.87501 -10.72954 -10.38219 -10.24997 -10.18941 -10.08335 -9.95018 -9.78841 -9.48219 -9.46645 -8.78605 -8.48680 -6.71048 -5.81361 -3.24190 0.71486 1.98031 2.40028 2.58187 3.05659 3.35947 3.43193 3.44506 3.46010 3.95804 4.46967 4.53143 4.56781 4.67744 4.85380 4.90409 5.05534 5.12032 5.27583 5.28694 5.32569 5.40178 5.46077 5.53592 5.55788 5.64858 5.80930 5.92932 6.04086 6.10048 6.22141 6.26060 6.40460 6.54431 6.61750 6.68358 6.75129 6.84768 6.86712 7.32800 7.50168 7.64125 7.77884 7.94985 8.13463 8.41388 9.17833 9.81140 10.36678 11.26678 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.015739 B = 0.003088 C = 0.002805 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1778.556813 B = 9065.903154 C = 9980.720166 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.056 3.944 3 O -0.282 6.282 4 C 0.205 3.795 5 C -0.160 4.160 6 C -0.048 4.048 7 C 0.602 3.398 8 O -0.517 6.517 9 N -0.690 5.690 10 C 0.159 3.841 11 H 0.079 0.921 12 C -0.156 4.156 13 C 0.172 3.828 14 N -0.591 5.591 15 C -0.253 4.253 16 H 0.066 0.934 17 C 0.003 3.997 18 N -0.900 5.900 19 Si 0.901 3.099 20 H -0.278 1.278 21 H -0.289 1.289 22 H -0.291 1.291 23 C 0.149 3.851 24 C -0.119 4.119 25 H 0.085 0.915 26 C -0.144 4.144 27 O 0.120 5.880 28 N -0.390 5.390 29 H 0.067 0.933 30 H 0.082 0.918 31 H 0.068 0.932 32 H 0.066 0.934 33 H 0.067 0.933 34 H 0.189 0.811 35 H 0.409 0.591 36 H 0.056 0.944 37 H 0.068 0.932 38 H 0.019 0.981 39 H 0.088 0.912 40 H 0.253 0.747 41 H 0.015 0.985 42 H 0.058 0.942 43 H 0.051 0.949 44 H 0.049 0.951 45 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.184 0.250 -11.270 18.118 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.019 4.019 3 O -0.189 6.189 4 C 0.008 3.992 5 C -0.183 4.183 6 C -0.115 4.115 7 C 0.384 3.616 8 O -0.394 6.394 9 N -0.341 5.341 10 C 0.056 3.944 11 H 0.097 0.903 12 C -0.196 4.196 13 C 0.046 3.954 14 N -0.313 5.313 15 C -0.383 4.383 16 H 0.084 0.916 17 C -0.196 4.196 18 N -0.544 5.544 19 Si 0.731 3.269 20 H -0.203 1.203 21 H -0.216 1.216 22 H -0.218 1.218 23 C 0.023 3.977 24 C -0.140 4.140 25 H 0.103 0.897 26 C -0.202 4.202 27 O 0.054 5.946 28 N -0.114 5.114 29 H 0.086 0.914 30 H 0.101 0.899 31 H 0.087 0.913 32 H 0.085 0.915 33 H 0.086 0.914 34 H 0.206 0.794 35 H 0.246 0.754 36 H 0.075 0.925 37 H 0.086 0.914 38 H 0.037 0.963 39 H 0.106 0.894 40 H 0.063 0.937 41 H 0.033 0.967 42 H 0.077 0.923 43 H 0.070 0.930 44 H 0.068 0.932 45 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -14.577 -0.057 -11.077 18.308 hybrid contribution 0.510 0.003 0.716 0.879 sum -14.067 -0.054 -10.362 17.471 Atomic orbital electron populations 1.21794 0.92161 1.03215 1.03657 1.22842 0.95879 0.80558 1.02578 1.86206 1.13018 1.30273 1.89389 1.21828 0.85815 0.90518 1.01078 1.22132 0.90085 0.99172 1.06947 1.24224 0.96760 0.84283 1.06192 1.16453 0.81198 0.86002 0.77927 1.90853 1.84913 1.12766 1.50847 1.46076 1.04749 1.11761 1.71526 1.21064 0.83495 0.91922 0.97955 0.90315 1.22596 1.00692 1.01170 0.95103 1.20754 0.90397 0.88033 0.96208 1.44073 1.20567 1.60451 1.06246 1.19197 0.87579 1.41529 0.89993 0.91583 1.25035 0.96502 1.00069 0.97957 1.70045 1.23028 1.52121 1.09219 0.86248 0.83179 0.77237 0.80233 1.20261 1.21586 1.21778 1.20933 0.98631 0.92141 0.86041 1.21964 0.97106 1.00469 0.94422 0.89652 1.21789 1.01325 1.00985 0.96067 1.84984 1.22747 1.18662 1.68228 1.74008 0.90436 1.22173 1.24762 0.91378 0.89942 0.91307 0.91529 0.91414 0.79385 0.75396 0.92495 0.91371 0.96309 0.89418 0.93679 0.96715 0.92305 0.93001 0.93169 0.92568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.96 10.28 37.15 0.38 -0.58 16 2 C 0.06 0.52 6.38 37.15 0.24 0.76 16 3 O -0.28 -3.37 10.21 -18.91 -0.19 -3.57 16 4 C 0.20 2.74 8.00 -16.72 -0.13 2.61 16 5 C -0.16 -2.08 10.97 -38.77 -0.43 -2.51 16 6 C -0.05 -0.68 7.29 -36.36 -0.26 -0.95 16 7 C 0.60 9.33 7.78 -12.46 -0.10 9.23 16 8 O -0.52 -9.11 16.57 5.30 0.09 -9.03 16 9 N -0.69 -10.53 3.60 -54.81 -0.20 -10.73 16 10 C 0.16 2.54 2.21 -67.90 -0.15 2.39 16 11 H 0.08 1.23 7.58 -51.93 -0.39 0.84 16 12 C -0.16 -2.91 5.77 -26.61 -0.15 -3.06 16 13 C 0.17 3.92 5.05 -3.71 -0.02 3.90 16 14 N -0.59 -13.84 2.99 -172.32 -0.52 -14.35 16 15 C -0.25 -6.66 9.59 -15.06 -0.14 -6.81 16 16 H 0.07 1.71 7.89 -52.49 -0.41 1.30 16 17 C 0.00 0.09 4.91 -17.43 -0.09 0.00 16 18 N -0.90 -25.56 11.19 55.49 0.62 -24.94 16 19 Si 0.90 21.29 29.59 -169.99 -5.03 16.26 16 20 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 21 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16 22 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 23 C 0.15 2.81 5.50 -3.71 -0.02 2.79 16 24 C -0.12 -1.83 2.67 -90.50 -0.24 -2.07 16 25 H 0.09 1.35 8.14 -51.93 -0.42 0.93 16 26 C -0.14 -1.78 9.06 37.16 0.34 -1.45 16 27 O 0.12 1.73 11.03 15.50 0.17 1.90 16 28 N -0.39 -5.60 11.50 30.47 0.35 -5.25 16 29 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 32 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.19 2.08 8.06 -52.48 -0.42 1.66 16 35 H 0.41 6.10 6.55 -40.82 -0.27 5.84 16 36 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 37 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 38 H 0.02 0.45 7.74 -51.93 -0.40 0.05 16 39 H 0.09 2.30 6.04 -51.93 -0.31 1.99 16 40 H 0.25 7.00 8.31 -40.82 -0.34 6.66 16 41 H 0.02 0.28 6.64 -51.93 -0.34 -0.07 16 42 H 0.06 1.10 7.94 -51.93 -0.41 0.69 16 43 H 0.05 0.62 7.54 -51.92 -0.39 0.23 16 44 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 45 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 LS Contribution 369.14 15.07 5.56 5.56 Total: -1.00 -29.98 369.14 -6.65 -36.62 By element: Atomic # 1 Polarization: 9.98 SS G_CDS: -6.72 Total: 3.26 kcal Atomic # 6 Polarization: 5.04 SS G_CDS: -0.78 Total: 4.26 kcal Atomic # 7 Polarization: -55.53 SS G_CDS: 0.26 Total: -55.27 kcal Atomic # 8 Polarization: -10.76 SS G_CDS: 0.07 Total: -10.69 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.03 Total: 16.26 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -29.98 -6.65 -36.62 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000942521256.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.295 kcal (2) G-P(sol) polarization free energy of solvation -29.978 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.646 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.624 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.670 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds