Wall clock time and date at job start Tue Mar 31 2020 14:45:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 O 1.42900 * 109.46988 * 2 1 4 4 C 1.35733 * 117.00026 * 180.02562 * 3 2 1 5 5 C 1.41856 * 126.78557 * 179.97438 * 4 3 2 6 6 C 1.36656 * 103.81100 * 180.02562 * 5 4 3 7 7 C 1.47543 * 126.87968 * 179.97438 * 6 5 4 8 8 O 1.21579 * 120.00048 * 0.02562 * 7 6 5 9 9 N 1.34782 * 120.00213 * 179.97438 * 7 6 5 10 10 C 1.46493 * 120.00356 * 179.97438 * 9 7 6 11 11 H 1.09004 * 109.44882 * 324.97076 * 10 9 7 12 12 C 1.53038 * 109.45749 * 84.93362 * 10 9 7 13 13 C 1.53193 * 109.31180 * 58.66013 * 12 10 9 14 14 N 1.46922 * 108.77778 * 54.63249 * 13 12 10 15 15 C 1.36934 * 120.63331 * 126.41481 * 14 13 12 16 16 H 1.07996 * 120.00228 * 207.66535 * 15 14 13 17 17 C 1.38812 * 119.99808 * 27.65448 * 15 14 13 18 18 N 1.31621 * 119.99877 * 17.38718 * 17 15 14 19 19 Si 1.86800 * 119.99995 * 197.37866 * 17 15 14 20 20 H 1.48493 * 109.47269 * 0.02562 * 19 17 15 21 21 H 1.48500 * 109.46942 * 120.00539 * 19 17 15 22 22 H 1.48504 * 109.47111 * 240.00270 * 19 17 15 23 23 C 1.46931 * 118.73691 * 306.39365 * 14 13 12 24 24 C 1.53037 * 109.46548 * 205.00290 * 10 9 7 25 25 H 1.08993 * 109.49938 * 181.39158 * 24 10 9 26 26 C 1.53006 * 109.52337 * 61.31350 * 24 10 9 27 27 O 1.34660 * 106.24478 * 0.24047 * 6 5 4 28 28 N 1.20875 * 111.62769 * 359.56154 * 27 6 5 29 29 H 1.08998 * 109.47388 * 60.00546 * 1 2 3 30 30 H 1.08999 * 109.47201 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.47770 * 300.00303 * 1 2 3 32 32 H 1.08995 * 109.47344 * 240.00039 * 2 1 3 33 33 H 1.08998 * 109.47388 * 119.99454 * 2 1 3 34 34 H 1.08005 * 128.09243 * 0.03826 * 5 4 3 35 35 H 0.96997 * 119.99477 * 0.02562 * 9 7 6 36 36 H 1.08997 * 109.50157 * 298.70685 * 12 10 9 37 37 H 1.09006 * 109.52481 * 178.62311 * 12 10 9 38 38 H 1.09000 * 109.58324 * 294.84259 * 13 12 10 39 39 H 1.09003 * 109.58820 * 174.42071 * 13 12 10 40 40 H 0.97001 * 119.99724 * 180.02562 * 18 17 15 41 41 H 1.08996 * 109.58583 * 293.81694 * 23 14 13 42 42 H 1.09002 * 109.70041 * 173.46010 * 23 14 13 43 43 H 1.09009 * 109.46960 * 300.08787 * 26 24 10 44 44 H 1.08998 * 109.46792 * 60.07813 * 26 24 10 45 45 H 1.08991 * 109.47269 * 180.08584 * 26 24 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0062 1.3473 0.0000 4 6 3.3519 1.5252 -0.0005 5 6 4.0451 2.7628 -0.0012 6 6 5.3623 2.3989 -0.0021 7 6 6.5301 3.3007 -0.0036 8 8 6.3677 4.5056 -0.0036 9 7 7.7769 2.7887 -0.0039 10 6 8.9364 3.6841 -0.0059 11 1 8.7088 4.5713 -0.5969 12 6 9.2631 4.0983 1.4306 13 6 9.5486 2.8466 2.2664 14 7 10.6066 2.0689 1.6072 15 6 11.7318 1.6990 2.2943 16 1 12.6609 1.5446 1.7659 17 6 11.6782 1.5228 3.6702 18 7 10.5162 1.3709 4.2694 19 14 13.2553 1.5010 4.6711 20 1 14.4179 1.6917 3.7672 21 1 13.2217 2.5978 5.6717 22 1 13.3799 0.1968 5.3702 23 6 10.4341 1.6953 0.1967 24 6 10.1388 2.9600 -0.6158 25 1 11.0081 3.6171 -0.5950 26 6 9.8240 2.5753 -2.0629 27 8 5.3811 1.0524 -0.0075 28 7 4.2639 0.5912 -0.0011 29 1 -0.3634 0.5137 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3635 0.5139 0.8900 32 1 1.8933 -0.5138 -0.8899 33 1 1.8933 -0.5137 0.8900 34 1 3.6291 3.7595 -0.0007 35 1 7.9064 1.8275 -0.0035 36 1 8.4151 4.6345 1.8565 37 1 10.1406 4.7450 1.4327 38 1 8.6440 2.2431 2.3411 39 1 9.8779 3.1400 3.2632 40 1 10.4788 1.2482 5.2309 41 1 9.6018 0.9978 0.1026 42 1 11.3464 1.2277 -0.1738 43 1 8.9544 1.9182 -2.0832 44 1 9.6127 3.4753 -2.6403 45 1 10.6802 2.0583 -2.4959 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000942521256.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:45:12 Heat of formation + Delta-G solvation = -8.068594 kcal Electronic energy + Delta-G solvation = -28031.047114 eV Core-core repulsion = 24052.469640 eV Total energy + Delta-G solvation = -3978.577474 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -46.13514 -41.31014 -40.10890 -39.21551 -36.06208 -34.65069 -34.17139 -33.11321 -32.81957 -32.16821 -31.55197 -27.37072 -27.24540 -25.68722 -24.56196 -24.25688 -23.49052 -22.70083 -21.90168 -20.29700 -20.14279 -19.12779 -18.65789 -18.04209 -17.24494 -17.04162 -16.91535 -16.75957 -16.22048 -15.71393 -15.65274 -15.40711 -15.27370 -14.75289 -14.72153 -14.56441 -14.19823 -14.08968 -13.55619 -13.51346 -13.14227 -12.97916 -12.95128 -12.68287 -12.52240 -12.43051 -12.31563 -12.14954 -12.13223 -11.93952 -11.65007 -11.50501 -11.43785 -11.09171 -11.02573 -10.51623 -10.48341 -10.12141 -8.63891 -7.84405 -5.28720 -0.40733 0.92778 1.43185 1.46964 1.47746 1.50114 1.59376 1.85154 2.27302 2.53308 2.93450 3.30861 3.56861 3.66575 3.73372 3.85810 3.91437 3.91519 4.08080 4.08551 4.16211 4.26258 4.44025 4.53640 4.63565 4.68973 4.78534 4.79782 4.83672 4.85111 5.00637 5.04998 5.11984 5.14627 5.19533 5.35581 5.42787 5.48905 5.57816 5.68101 5.78068 5.83874 6.25837 6.41631 6.81897 6.92824 7.17761 7.89719 8.40025 9.21289 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.015739 B = 0.003088 C = 0.002805 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1778.556813 B = 9065.903154 C = 9980.720166 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.048 3.952 3 O -0.287 6.287 4 C 0.205 3.795 5 C -0.150 4.150 6 C -0.058 4.058 7 C 0.608 3.392 8 O -0.538 6.538 9 N -0.688 5.688 10 C 0.165 3.835 11 H 0.093 0.907 12 C -0.144 4.144 13 C 0.183 3.817 14 N -0.607 5.607 15 C -0.255 4.255 16 H 0.070 0.930 17 C -0.051 4.051 18 N -0.933 5.933 19 Si 0.962 3.038 20 H -0.265 1.265 21 H -0.294 1.294 22 H -0.295 1.295 23 C 0.145 3.855 24 C -0.105 4.105 25 H 0.085 0.915 26 C -0.136 4.136 27 O 0.112 5.888 28 N -0.401 5.401 29 H 0.071 0.929 30 H 0.104 0.896 31 H 0.068 0.932 32 H 0.069 0.931 33 H 0.063 0.937 34 H 0.208 0.792 35 H 0.411 0.589 36 H 0.054 0.946 37 H 0.069 0.931 38 H -0.001 1.001 39 H 0.048 0.952 40 H 0.247 0.753 41 H 0.020 0.980 42 H 0.060 0.940 43 H 0.055 0.945 44 H 0.065 0.935 45 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.670 0.468 -13.113 19.682 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.026 4.026 3 O -0.194 6.194 4 C 0.008 3.992 5 C -0.173 4.173 6 C -0.124 4.124 7 C 0.392 3.608 8 O -0.416 6.416 9 N -0.338 5.338 10 C 0.062 3.938 11 H 0.111 0.889 12 C -0.184 4.184 13 C 0.057 3.943 14 N -0.330 5.330 15 C -0.386 4.386 16 H 0.087 0.913 17 C -0.247 4.247 18 N -0.580 5.580 19 Si 0.791 3.209 20 H -0.189 1.189 21 H -0.221 1.221 22 H -0.223 1.223 23 C 0.020 3.980 24 C -0.126 4.126 25 H 0.103 0.897 26 C -0.194 4.194 27 O 0.047 5.953 28 N -0.127 5.127 29 H 0.090 0.910 30 H 0.122 0.878 31 H 0.087 0.913 32 H 0.087 0.913 33 H 0.081 0.919 34 H 0.225 0.775 35 H 0.248 0.752 36 H 0.073 0.927 37 H 0.088 0.912 38 H 0.017 0.983 39 H 0.066 0.934 40 H 0.056 0.944 41 H 0.038 0.962 42 H 0.078 0.922 43 H 0.074 0.926 44 H 0.084 0.916 45 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -15.058 0.156 -12.963 19.870 hybrid contribution 0.585 -0.118 1.261 1.395 sum -14.473 0.038 -11.703 18.612 Atomic orbital electron populations 1.21823 0.89814 1.04701 1.03859 1.23127 0.97706 0.79328 1.02487 1.86232 1.12055 1.31983 1.89089 1.21984 0.86415 0.90438 1.00403 1.22414 0.89578 0.99921 1.05380 1.24011 0.96701 0.84250 1.07418 1.16486 0.81373 0.85824 0.77157 1.90840 1.85262 1.13644 1.51866 1.46023 1.04662 1.11737 1.71403 1.20983 0.84069 0.92729 0.96038 0.88859 1.22416 1.00649 0.98957 0.96390 1.20456 0.89251 0.89324 0.95223 1.44291 1.19954 1.60879 1.07916 1.19530 0.88693 1.39935 0.90406 0.91277 1.25735 0.98989 1.00856 0.99098 1.70194 1.24862 1.54065 1.08845 0.85290 0.80455 0.76483 0.78710 1.18923 1.22140 1.22273 1.21121 0.98936 0.94071 0.83871 1.21804 0.96696 0.98343 0.95731 0.89684 1.21728 1.02040 1.01947 0.93675 1.84971 1.22906 1.18732 1.68708 1.73990 0.90622 1.22644 1.25406 0.90950 0.87796 0.91292 0.91300 0.91852 0.77531 0.75191 0.92715 0.91243 0.98281 0.93374 0.94397 0.96181 0.92196 0.92571 0.91584 0.91384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.57 10.28 71.98 0.74 -0.83 16 2 C 0.05 0.82 6.38 71.98 0.46 1.28 16 3 O -0.29 -6.51 10.21 -90.56 -0.92 -7.43 16 4 C 0.20 5.28 8.00 85.78 0.69 5.96 16 5 C -0.15 -3.71 10.97 22.79 0.25 -3.46 16 6 C -0.06 -1.58 7.29 24.36 0.18 -1.41 16 7 C 0.61 18.22 7.78 86.70 0.67 18.89 16 8 O -0.54 -18.26 16.57 -3.97 -0.07 -18.32 16 9 N -0.69 -20.24 3.60 -445.59 -1.60 -21.84 16 10 C 0.17 5.03 2.21 45.02 0.10 5.13 16 11 H 0.09 2.68 7.58 -2.39 -0.02 2.66 16 12 C -0.14 -5.35 5.77 30.67 0.18 -5.18 16 13 C 0.18 8.56 5.05 86.36 0.44 9.00 16 14 N -0.61 -28.57 2.99 -699.10 -2.09 -30.66 16 15 C -0.26 -13.48 9.59 84.03 0.81 -12.68 16 16 H 0.07 3.54 7.89 -2.91 -0.02 3.52 16 17 C -0.05 -2.82 4.91 84.86 0.42 -2.41 16 18 N -0.93 -54.69 11.19 21.65 0.24 -54.44 16 19 Si 0.96 44.43 29.59 68.60 2.03 46.46 16 20 H -0.26 -11.55 7.11 99.48 0.71 -10.84 16 21 H -0.29 -13.72 7.11 99.48 0.71 -13.01 16 22 H -0.30 -13.76 7.11 99.48 0.71 -13.05 16 23 C 0.15 5.31 5.50 86.36 0.47 5.79 16 24 C -0.11 -3.01 2.67 -10.72 -0.03 -3.04 16 25 H 0.08 2.49 8.14 -2.39 -0.02 2.47 16 26 C -0.14 -2.94 9.06 71.98 0.65 -2.29 16 27 O 0.11 3.18 11.03 65.66 0.72 3.90 16 28 N -0.40 -11.27 11.50 -172.01 -1.98 -13.25 16 29 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 30 H 0.10 0.69 8.14 -2.39 -0.02 0.67 16 31 H 0.07 0.75 8.14 -2.38 -0.02 0.74 16 32 H 0.07 1.14 8.14 -2.39 -0.02 1.13 16 33 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 34 H 0.21 4.19 8.06 -2.91 -0.02 4.16 16 35 H 0.41 11.92 6.55 -92.71 -0.61 11.31 16 36 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 37 H 0.07 2.55 8.14 -2.38 -0.02 2.53 16 38 H 0.00 -0.04 7.74 -2.39 -0.02 -0.06 16 39 H 0.05 2.63 6.04 -2.39 -0.01 2.61 16 40 H 0.25 14.14 8.31 -92.71 -0.77 13.37 16 41 H 0.02 0.73 6.64 -2.39 -0.02 0.71 16 42 H 0.06 2.16 7.94 -2.39 -0.02 2.14 16 43 H 0.06 1.18 7.54 -2.38 -0.02 1.16 16 44 H 0.07 1.26 8.14 -2.39 -0.02 1.25 16 45 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 Total: -1.00 -64.94 369.14 2.75 -62.19 By element: Atomic # 1 Polarization: 18.24 SS G_CDS: 0.40 Total: 18.64 kcal Atomic # 6 Polarization: 8.75 SS G_CDS: 6.02 Total: 14.77 kcal Atomic # 7 Polarization: -114.77 SS G_CDS: -5.43 Total: -120.20 kcal Atomic # 8 Polarization: -21.59 SS G_CDS: -0.27 Total: -21.86 kcal Atomic # 14 Polarization: 44.43 SS G_CDS: 2.03 Total: 46.46 kcal Total: -64.94 2.75 -62.19 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000942521256.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.122 kcal (2) G-P(sol) polarization free energy of solvation -64.941 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.819 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.750 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.190 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.069 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds