Wall clock time and date at job start Tue Mar 31 2020 14:45:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.42897 * 109.47508 * 2 1 4 4 C 1.35734 * 117.00049 * 179.97438 * 3 2 1 5 5 C 1.41852 * 126.78418 * 180.02562 * 4 3 2 6 6 C 1.36659 * 103.81015 * 180.02562 * 5 4 3 7 7 C 1.47549 * 126.88027 * 179.97438 * 6 5 4 8 8 O 1.21581 * 119.99373 * 0.02562 * 7 6 5 9 9 N 1.34775 * 120.00232 * 180.02562 * 7 6 5 10 10 C 1.46494 * 119.99873 * 180.02562 * 9 7 6 11 11 H 1.08999 * 109.46545 * 35.00109 * 10 9 7 12 12 C 1.53043 * 109.46102 * 275.02525 * 10 9 7 13 13 C 1.53169 * 109.32816 * 301.36471 * 12 10 9 14 14 N 1.46928 * 108.76408 * 305.35029 * 13 12 10 15 15 C 1.36935 * 120.63075 * 233.63255 * 14 13 12 16 16 H 1.08005 * 119.99881 * 151.81199 * 15 14 13 17 17 C 1.38811 * 120.00122 * 331.80739 * 15 14 13 18 18 N 1.31628 * 119.99756 * 343.09299 * 17 15 14 19 19 Si 1.86800 * 120.00220 * 163.09368 * 17 15 14 20 20 H 1.48493 * 109.47251 * 59.99836 * 19 17 15 21 21 H 1.48502 * 109.47052 * 180.02562 * 19 17 15 22 22 H 1.48496 * 109.46870 * 299.99744 * 19 17 15 23 23 C 1.46928 * 118.73829 * 53.61464 * 14 13 12 24 24 C 1.53047 * 109.45977 * 154.97326 * 10 9 7 25 25 H 1.09000 * 109.49899 * 178.63506 * 24 10 9 26 26 C 1.52991 * 109.49522 * 298.70397 * 24 10 9 27 27 O 1.34653 * 106.24292 * 0.02562 * 6 5 4 28 28 N 1.20882 * 111.63270 * 359.70192 * 27 6 5 29 29 H 1.08997 * 109.47291 * 300.00205 * 1 2 3 30 30 H 1.08995 * 109.47728 * 179.97438 * 1 2 3 31 31 H 1.09008 * 109.46908 * 59.99670 * 1 2 3 32 32 H 1.09008 * 109.46908 * 120.00330 * 2 1 3 33 33 H 1.09007 * 109.47337 * 239.99910 * 2 1 3 34 34 H 1.08002 * 128.09303 * 359.97438 * 5 4 3 35 35 H 0.97004 * 119.99568 * 0.02562 * 9 7 6 36 36 H 1.09001 * 109.49681 * 61.29600 * 12 10 9 37 37 H 1.08997 * 109.50140 * 181.39407 * 12 10 9 38 38 H 1.08994 * 109.58685 * 185.56840 * 13 12 10 39 39 H 1.08999 * 109.59170 * 65.13713 * 13 12 10 40 40 H 0.96998 * 119.99954 * 180.02562 * 18 17 15 41 41 H 1.08998 * 109.58604 * 186.60388 * 23 14 13 42 42 H 1.08995 * 109.59117 * 66.17129 * 23 14 13 43 43 H 1.09006 * 109.47752 * 59.99952 * 26 24 10 44 44 H 1.09008 * 109.46830 * 180.02562 * 26 24 10 45 45 H 1.08997 * 109.47231 * 299.99554 * 26 24 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3520 1.5250 0.0005 5 6 4.0453 2.7625 0.0012 6 6 5.3625 2.3985 0.0009 7 6 6.5304 3.3002 0.0008 8 8 6.3680 4.5051 0.0014 9 7 7.7772 2.7882 0.0001 10 6 8.9366 3.6836 0.0006 11 1 8.7098 4.5714 0.5908 12 6 9.2626 4.0965 -1.4366 13 6 9.5470 2.8443 -2.2717 14 7 10.6055 2.0671 -1.6127 15 6 11.7306 1.6974 -2.3002 16 1 12.6620 1.5516 -1.7732 17 6 11.6740 1.5101 -3.6744 18 7 10.5104 1.3570 -4.2704 19 14 13.2492 1.4751 -4.6780 20 1 14.1159 0.3680 -4.2004 21 1 12.9189 1.2633 -6.1103 22 1 13.9647 2.7668 -4.5212 23 6 10.4341 1.6944 -0.2018 24 6 10.1395 2.9597 0.6101 25 1 11.0088 3.6170 0.5886 26 6 9.8249 2.5761 2.0573 27 8 5.3812 1.0521 -0.0003 28 7 4.2638 0.5909 0.0050 29 1 -0.3634 0.5138 0.8899 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5139 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 1.8934 -0.5139 -0.8900 34 1 3.6294 3.7593 0.0009 35 1 7.9066 1.8269 -0.0008 36 1 8.4143 4.6323 -1.8625 37 1 10.1402 4.7428 -1.4393 38 1 9.8756 3.1370 -3.2689 39 1 8.6424 2.2408 -2.3452 40 1 10.4709 1.2257 -5.2306 41 1 11.3480 1.2285 0.1667 42 1 9.6018 0.9972 -0.1065 43 1 8.9562 1.9179 2.0783 44 1 10.6821 2.0610 2.4912 45 1 9.6126 3.4764 2.6339 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000942521258.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:45:20 Heat of formation + Delta-G solvation = 11.615155 kcal Electronic energy + Delta-G solvation = -28030.268837 eV Core-core repulsion = 24052.544915 eV Total energy + Delta-G solvation = -3977.723923 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -45.05589 -39.98540 -39.19883 -37.76733 -34.40346 -33.63951 -32.80735 -31.97061 -31.39912 -31.08951 -29.96725 -26.02354 -25.50361 -24.55353 -23.53585 -23.21091 -21.96987 -21.17249 -20.83279 -19.13599 -18.67953 -18.05201 -17.05900 -16.79332 -16.19374 -16.06965 -15.60141 -15.00679 -14.78682 -14.67874 -14.16562 -14.00118 -13.77624 -13.63543 -13.38604 -13.36181 -13.02568 -12.98221 -12.59106 -12.19749 -12.16707 -11.52672 -11.48703 -11.44510 -11.40041 -11.10527 -10.86809 -10.70682 -10.41347 -10.26629 -10.19006 -10.08337 -9.94892 -9.78436 -9.48437 -9.47044 -8.78369 -8.47885 -6.69998 -5.80982 -3.24485 0.71590 1.98106 2.40097 2.58272 3.05788 3.37359 3.43296 3.43805 3.44594 3.95937 4.47198 4.53207 4.56802 4.67830 4.85471 4.90452 5.05623 5.12221 5.27992 5.28758 5.32767 5.40203 5.46242 5.53743 5.56035 5.64905 5.81138 5.93097 6.04259 6.10262 6.22515 6.26239 6.40655 6.54619 6.62033 6.68598 6.75200 6.84928 6.87005 7.32914 7.50304 7.64106 7.77467 7.95057 8.13574 8.42147 9.18211 9.81330 10.37209 11.27099 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.015709 B = 0.003090 C = 0.002805 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1781.953601 B = 9059.986526 C = 9979.719656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.056 3.944 3 O -0.282 6.282 4 C 0.205 3.795 5 C -0.161 4.161 6 C -0.048 4.048 7 C 0.602 3.398 8 O -0.517 6.517 9 N -0.690 5.690 10 C 0.159 3.841 11 H 0.079 0.921 12 C -0.156 4.156 13 C 0.172 3.828 14 N -0.591 5.591 15 C -0.255 4.255 16 H 0.065 0.935 17 C 0.004 3.996 18 N -0.901 5.901 19 Si 0.902 3.098 20 H -0.283 1.283 21 H -0.291 1.291 22 H -0.284 1.284 23 C 0.150 3.850 24 C -0.119 4.119 25 H 0.085 0.915 26 C -0.144 4.144 27 O 0.120 5.880 28 N -0.390 5.390 29 H 0.067 0.933 30 H 0.082 0.918 31 H 0.068 0.932 32 H 0.066 0.934 33 H 0.068 0.932 34 H 0.189 0.811 35 H 0.409 0.591 36 H 0.056 0.944 37 H 0.068 0.932 38 H 0.087 0.913 39 H 0.019 0.981 40 H 0.254 0.746 41 H 0.058 0.942 42 H 0.015 0.985 43 H 0.051 0.949 44 H 0.055 0.945 45 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.181 0.249 11.191 18.067 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.019 4.019 3 O -0.189 6.189 4 C 0.008 3.992 5 C -0.183 4.183 6 C -0.115 4.115 7 C 0.384 3.616 8 O -0.394 6.394 9 N -0.341 5.341 10 C 0.056 3.944 11 H 0.097 0.903 12 C -0.196 4.196 13 C 0.046 3.954 14 N -0.313 5.313 15 C -0.385 4.385 16 H 0.083 0.917 17 C -0.195 4.195 18 N -0.545 5.545 19 Si 0.732 3.268 20 H -0.209 1.209 21 H -0.217 1.217 22 H -0.210 1.210 23 C 0.023 3.977 24 C -0.140 4.140 25 H 0.103 0.897 26 C -0.202 4.202 27 O 0.054 5.946 28 N -0.114 5.114 29 H 0.086 0.914 30 H 0.101 0.899 31 H 0.087 0.913 32 H 0.085 0.915 33 H 0.086 0.914 34 H 0.206 0.794 35 H 0.246 0.754 36 H 0.075 0.925 37 H 0.086 0.914 38 H 0.105 0.895 39 H 0.037 0.963 40 H 0.064 0.936 41 H 0.077 0.923 42 H 0.033 0.967 43 H 0.070 0.930 44 H 0.074 0.926 45 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -14.584 -0.064 10.995 18.264 hybrid contribution 0.529 -0.002 -0.699 0.877 sum -14.055 -0.067 10.295 17.422 Atomic orbital electron populations 1.21793 0.92160 1.03215 1.03656 1.22845 0.95878 0.80561 1.02578 1.86205 1.13018 1.30272 1.89389 1.21827 0.85815 0.90521 1.01072 1.22131 0.90084 0.99172 1.06958 1.24227 0.96763 0.84284 1.06180 1.16453 0.81199 0.86002 0.77928 1.90854 1.84913 1.12765 1.50855 1.46076 1.04749 1.11764 1.71515 1.21067 0.83495 0.91926 0.97954 0.90311 1.22596 1.00688 1.01187 0.95102 1.20743 0.90406 0.88019 0.96183 1.44052 1.20532 1.60503 1.06218 1.19113 0.87473 1.41758 0.90153 0.91702 1.25048 0.96494 0.99914 0.98005 1.70022 1.23010 1.51861 1.09560 0.86375 0.83109 0.78059 0.79233 1.20901 1.21686 1.21025 1.20938 0.98625 0.92133 0.86039 1.21969 0.97100 1.00478 0.94425 0.89658 1.21788 1.01322 1.00986 0.96068 1.84984 1.22744 1.18663 1.68229 1.74012 0.90434 1.22169 1.24769 0.91380 0.89941 0.91307 0.91530 0.91414 0.79387 0.75389 0.92504 0.91372 0.89478 0.96298 0.93561 0.92303 0.96698 0.92996 0.92575 0.93176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.96 10.28 37.16 0.38 -0.58 16 2 C 0.06 0.52 6.38 37.16 0.24 0.76 16 3 O -0.28 -3.37 10.21 -18.91 -0.19 -3.57 16 4 C 0.20 2.74 8.00 -16.72 -0.13 2.61 16 5 C -0.16 -2.09 10.97 -38.77 -0.43 -2.51 16 6 C -0.05 -0.68 7.29 -36.36 -0.26 -0.95 16 7 C 0.60 9.33 7.78 -12.46 -0.10 9.23 16 8 O -0.52 -9.12 16.57 5.29 0.09 -9.03 16 9 N -0.69 -10.54 3.59 -54.80 -0.20 -10.73 16 10 C 0.16 2.55 2.21 -67.89 -0.15 2.39 16 11 H 0.08 1.23 7.58 -51.93 -0.39 0.84 16 12 C -0.16 -2.91 5.77 -26.62 -0.15 -3.07 16 13 C 0.17 3.93 5.05 -3.72 -0.02 3.91 16 14 N -0.59 -13.85 2.99 -172.33 -0.52 -14.36 16 15 C -0.26 -6.72 9.58 -15.06 -0.14 -6.86 16 16 H 0.07 1.67 7.89 -52.48 -0.41 1.26 16 17 C 0.00 0.12 4.92 -17.43 -0.09 0.03 16 18 N -0.90 -25.58 11.20 55.49 0.62 -24.96 16 19 Si 0.90 21.30 29.59 -169.99 -5.03 16.27 16 20 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 21 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 22 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 23 C 0.15 2.81 5.50 -3.71 -0.02 2.79 16 24 C -0.12 -1.83 2.67 -90.50 -0.24 -2.07 16 25 H 0.09 1.36 8.14 -51.93 -0.42 0.93 16 26 C -0.14 -1.79 9.05 37.15 0.34 -1.45 16 27 O 0.12 1.73 11.03 15.52 0.17 1.90 16 28 N -0.39 -5.60 11.50 30.47 0.35 -5.25 16 29 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.07 0.44 8.14 -51.92 -0.42 0.01 16 32 H 0.07 0.59 8.14 -51.92 -0.42 0.17 16 33 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.19 2.08 8.06 -52.49 -0.42 1.66 16 35 H 0.41 6.11 6.55 -40.82 -0.27 5.84 16 36 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 37 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 38 H 0.09 2.28 6.06 -51.93 -0.31 1.97 16 39 H 0.02 0.45 7.74 -51.93 -0.40 0.05 16 40 H 0.25 7.06 8.31 -40.82 -0.34 6.73 16 41 H 0.06 1.10 7.93 -51.93 -0.41 0.69 16 42 H 0.02 0.28 6.64 -51.93 -0.34 -0.06 16 43 H 0.05 0.62 7.54 -51.93 -0.39 0.23 16 44 H 0.06 0.65 8.14 -51.92 -0.42 0.23 16 45 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 LS Contribution 369.16 15.07 5.56 5.56 Total: -1.00 -29.94 369.16 -6.65 -36.59 By element: Atomic # 1 Polarization: 10.07 SS G_CDS: -6.72 Total: 3.34 kcal Atomic # 6 Polarization: 5.02 SS G_CDS: -0.78 Total: 4.24 kcal Atomic # 7 Polarization: -55.57 SS G_CDS: 0.26 Total: -55.31 kcal Atomic # 8 Polarization: -10.76 SS G_CDS: 0.07 Total: -10.70 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.03 Total: 16.27 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -29.94 -6.65 -36.59 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000942521258.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.202 kcal (2) G-P(sol) polarization free energy of solvation -29.941 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.261 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.646 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.587 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.615 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds