Wall clock time and date at job start Tue Mar 31 2020 14:45:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.42897 * 109.47508 * 2 1 4 4 C 1.35734 * 117.00049 * 179.97438 * 3 2 1 5 5 C 1.41852 * 126.78418 * 180.02562 * 4 3 2 6 6 C 1.36659 * 103.81015 * 180.02562 * 5 4 3 7 7 C 1.47549 * 126.88027 * 179.97438 * 6 5 4 8 8 O 1.21581 * 119.99373 * 0.02562 * 7 6 5 9 9 N 1.34775 * 120.00232 * 180.02562 * 7 6 5 10 10 C 1.46494 * 119.99873 * 180.02562 * 9 7 6 11 11 H 1.08999 * 109.46545 * 35.00109 * 10 9 7 12 12 C 1.53043 * 109.46102 * 275.02525 * 10 9 7 13 13 C 1.53169 * 109.32816 * 301.36471 * 12 10 9 14 14 N 1.46928 * 108.76408 * 305.35029 * 13 12 10 15 15 C 1.36935 * 120.63075 * 233.63255 * 14 13 12 16 16 H 1.08005 * 119.99881 * 151.81199 * 15 14 13 17 17 C 1.38811 * 120.00122 * 331.80739 * 15 14 13 18 18 N 1.31628 * 119.99756 * 343.09299 * 17 15 14 19 19 Si 1.86800 * 120.00220 * 163.09368 * 17 15 14 20 20 H 1.48493 * 109.47251 * 59.99836 * 19 17 15 21 21 H 1.48502 * 109.47052 * 180.02562 * 19 17 15 22 22 H 1.48496 * 109.46870 * 299.99744 * 19 17 15 23 23 C 1.46928 * 118.73829 * 53.61464 * 14 13 12 24 24 C 1.53047 * 109.45977 * 154.97326 * 10 9 7 25 25 H 1.09000 * 109.49899 * 178.63506 * 24 10 9 26 26 C 1.52991 * 109.49522 * 298.70397 * 24 10 9 27 27 O 1.34653 * 106.24292 * 0.02562 * 6 5 4 28 28 N 1.20882 * 111.63270 * 359.70192 * 27 6 5 29 29 H 1.08997 * 109.47291 * 300.00205 * 1 2 3 30 30 H 1.08995 * 109.47728 * 179.97438 * 1 2 3 31 31 H 1.09008 * 109.46908 * 59.99670 * 1 2 3 32 32 H 1.09008 * 109.46908 * 120.00330 * 2 1 3 33 33 H 1.09007 * 109.47337 * 239.99910 * 2 1 3 34 34 H 1.08002 * 128.09303 * 359.97438 * 5 4 3 35 35 H 0.97004 * 119.99568 * 0.02562 * 9 7 6 36 36 H 1.09001 * 109.49681 * 61.29600 * 12 10 9 37 37 H 1.08997 * 109.50140 * 181.39407 * 12 10 9 38 38 H 1.08994 * 109.58685 * 185.56840 * 13 12 10 39 39 H 1.08999 * 109.59170 * 65.13713 * 13 12 10 40 40 H 0.96998 * 119.99954 * 180.02562 * 18 17 15 41 41 H 1.08998 * 109.58604 * 186.60388 * 23 14 13 42 42 H 1.08995 * 109.59117 * 66.17129 * 23 14 13 43 43 H 1.09006 * 109.47752 * 59.99952 * 26 24 10 44 44 H 1.09008 * 109.46830 * 180.02562 * 26 24 10 45 45 H 1.08997 * 109.47231 * 299.99554 * 26 24 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3520 1.5250 0.0005 5 6 4.0453 2.7625 0.0012 6 6 5.3625 2.3985 0.0009 7 6 6.5304 3.3002 0.0008 8 8 6.3680 4.5051 0.0014 9 7 7.7772 2.7882 0.0001 10 6 8.9366 3.6836 0.0006 11 1 8.7098 4.5714 0.5908 12 6 9.2626 4.0965 -1.4366 13 6 9.5470 2.8443 -2.2717 14 7 10.6055 2.0671 -1.6127 15 6 11.7306 1.6974 -2.3002 16 1 12.6620 1.5516 -1.7732 17 6 11.6740 1.5101 -3.6744 18 7 10.5104 1.3570 -4.2704 19 14 13.2492 1.4751 -4.6780 20 1 14.1159 0.3680 -4.2004 21 1 12.9189 1.2633 -6.1103 22 1 13.9647 2.7668 -4.5212 23 6 10.4341 1.6944 -0.2018 24 6 10.1395 2.9597 0.6101 25 1 11.0088 3.6170 0.5886 26 6 9.8249 2.5761 2.0573 27 8 5.3812 1.0521 -0.0003 28 7 4.2638 0.5909 0.0050 29 1 -0.3634 0.5138 0.8899 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5139 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 1.8934 -0.5139 -0.8900 34 1 3.6294 3.7593 0.0009 35 1 7.9066 1.8269 -0.0008 36 1 8.4143 4.6323 -1.8625 37 1 10.1402 4.7428 -1.4393 38 1 9.8756 3.1370 -3.2689 39 1 8.6424 2.2408 -2.3452 40 1 10.4709 1.2257 -5.2306 41 1 11.3480 1.2285 0.1667 42 1 9.6018 0.9972 -0.1065 43 1 8.9562 1.9179 2.0783 44 1 10.6821 2.0610 2.4912 45 1 9.6126 3.4764 2.6339 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000942521258.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:45:19 Heat of formation + Delta-G solvation = -8.085678 kcal Electronic energy + Delta-G solvation = -28031.123130 eV Core-core repulsion = 24052.544915 eV Total energy + Delta-G solvation = -3978.578215 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -46.13444 -41.30994 -40.10875 -39.21421 -36.05787 -34.65001 -34.17029 -33.11270 -32.82187 -32.16765 -31.55034 -27.36924 -27.24198 -25.68637 -24.56140 -24.25550 -23.48820 -22.69836 -21.90109 -20.29694 -20.14233 -19.12723 -18.65391 -18.04132 -17.24433 -17.04283 -16.91234 -16.75334 -16.22338 -15.71240 -15.64950 -15.41378 -15.27473 -14.75150 -14.71955 -14.56685 -14.18761 -14.08940 -13.55631 -13.51344 -13.14172 -12.97894 -12.92021 -12.66722 -12.51412 -12.41834 -12.31215 -12.20837 -12.14915 -11.94604 -11.65093 -11.50359 -11.43982 -11.09365 -11.02598 -10.50063 -10.48356 -10.12097 -8.62837 -7.84122 -5.29121 -0.40713 0.92796 1.43166 1.47667 1.48682 1.51124 1.57074 1.85177 2.27303 2.53622 2.93521 3.31111 3.56880 3.66714 3.73538 3.85812 3.91413 3.91538 4.08108 4.08569 4.16188 4.26239 4.44055 4.53672 4.63563 4.69009 4.78563 4.79823 4.83816 4.85105 5.00622 5.05023 5.11927 5.14639 5.19468 5.35552 5.42793 5.48852 5.57659 5.67810 5.77993 5.83891 6.25841 6.41955 6.81866 6.92815 7.18057 7.89903 8.40491 9.21365 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.015709 B = 0.003090 C = 0.002805 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1781.953601 B = 9059.986526 C = 9979.719656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.048 3.952 3 O -0.287 6.287 4 C 0.205 3.795 5 C -0.150 4.150 6 C -0.058 4.058 7 C 0.608 3.392 8 O -0.538 6.538 9 N -0.688 5.688 10 C 0.165 3.835 11 H 0.093 0.907 12 C -0.144 4.144 13 C 0.184 3.816 14 N -0.607 5.607 15 C -0.259 4.259 16 H 0.069 0.931 17 C -0.050 4.050 18 N -0.933 5.933 19 Si 0.963 3.037 20 H -0.275 1.275 21 H -0.299 1.299 22 H -0.279 1.279 23 C 0.146 3.854 24 C -0.105 4.105 25 H 0.085 0.915 26 C -0.136 4.136 27 O 0.112 5.888 28 N -0.401 5.401 29 H 0.071 0.929 30 H 0.104 0.896 31 H 0.068 0.932 32 H 0.069 0.931 33 H 0.063 0.937 34 H 0.208 0.792 35 H 0.411 0.589 36 H 0.054 0.946 37 H 0.069 0.931 38 H 0.047 0.953 39 H -0.001 1.001 40 H 0.247 0.753 41 H 0.059 0.941 42 H 0.021 0.979 43 H 0.055 0.945 44 H 0.067 0.933 45 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.666 0.446 13.003 19.605 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.027 4.027 3 O -0.194 6.194 4 C 0.008 3.992 5 C -0.173 4.173 6 C -0.124 4.124 7 C 0.392 3.608 8 O -0.416 6.416 9 N -0.338 5.338 10 C 0.062 3.938 11 H 0.111 0.889 12 C -0.184 4.184 13 C 0.058 3.942 14 N -0.330 5.330 15 C -0.389 4.389 16 H 0.087 0.913 17 C -0.246 4.246 18 N -0.580 5.580 19 Si 0.791 3.209 20 H -0.201 1.201 21 H -0.225 1.225 22 H -0.206 1.206 23 C 0.020 3.980 24 C -0.126 4.126 25 H 0.103 0.897 26 C -0.194 4.194 27 O 0.047 5.953 28 N -0.127 5.127 29 H 0.090 0.910 30 H 0.122 0.878 31 H 0.087 0.913 32 H 0.087 0.913 33 H 0.082 0.918 34 H 0.225 0.775 35 H 0.248 0.752 36 H 0.073 0.927 37 H 0.087 0.913 38 H 0.066 0.934 39 H 0.017 0.983 40 H 0.056 0.944 41 H 0.078 0.922 42 H 0.038 0.962 43 H 0.074 0.926 44 H 0.086 0.914 45 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -15.064 0.127 12.849 19.800 hybrid contribution 0.605 -0.114 -1.233 1.379 sum -14.458 0.013 11.615 18.546 Atomic orbital electron populations 1.21823 0.89812 1.04701 1.03858 1.23130 0.97706 0.79331 1.02488 1.86231 1.12054 1.31984 1.89089 1.21983 0.86417 0.90441 1.00397 1.22413 0.89576 0.99922 1.05387 1.24012 0.96702 0.84247 1.07407 1.16486 0.81373 0.85824 0.77156 1.90841 1.85260 1.13643 1.51872 1.46022 1.04661 1.11737 1.71394 1.20986 0.84069 0.92732 0.96035 0.88859 1.22415 1.00637 0.98973 0.96397 1.20447 0.89265 0.89310 0.95196 1.44272 1.19923 1.60945 1.07887 1.19464 0.88617 1.40209 0.90591 0.91333 1.25754 0.99003 1.00662 0.99152 1.70179 1.24848 1.53812 1.09113 0.85411 0.79981 0.78203 0.77260 1.20086 1.22531 1.20554 1.21125 0.98918 0.94062 0.83872 1.21809 0.96690 0.98350 0.95738 0.89701 1.21727 1.02039 1.01948 0.93674 1.84970 1.22909 1.18737 1.68714 1.73994 0.90616 1.22637 1.25411 0.90954 0.87794 0.91290 0.91306 0.91846 0.77532 0.75186 0.92708 0.91273 0.93422 0.98262 0.94369 0.92214 0.96168 0.92565 0.91389 0.91593 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.57 10.28 71.98 0.74 -0.83 16 2 C 0.05 0.82 6.38 71.98 0.46 1.28 16 3 O -0.29 -6.51 10.21 -90.58 -0.92 -7.44 16 4 C 0.20 5.28 8.00 85.78 0.69 5.97 16 5 C -0.15 -3.72 10.97 22.79 0.25 -3.47 16 6 C -0.06 -1.58 7.29 24.36 0.18 -1.40 16 7 C 0.61 18.23 7.78 86.70 0.67 18.91 16 8 O -0.54 -18.27 16.57 -3.97 -0.07 -18.34 16 9 N -0.69 -20.27 3.59 -445.57 -1.60 -21.87 16 10 C 0.17 5.04 2.21 45.02 0.10 5.14 16 11 H 0.09 2.68 7.58 -2.39 -0.02 2.66 16 12 C -0.14 -5.37 5.77 30.67 0.18 -5.19 16 13 C 0.18 8.59 5.05 86.35 0.44 9.02 16 14 N -0.61 -28.61 2.99 -699.13 -2.09 -30.70 16 15 C -0.26 -13.67 9.58 84.03 0.81 -12.87 16 16 H 0.07 3.51 7.89 -2.91 -0.02 3.48 16 17 C -0.05 -2.76 4.92 84.86 0.42 -2.34 16 18 N -0.93 -54.71 11.20 21.65 0.24 -54.47 16 19 Si 0.96 44.40 29.59 68.60 2.03 46.43 16 20 H -0.28 -12.22 7.11 99.48 0.71 -11.51 16 21 H -0.30 -14.04 7.11 99.48 0.71 -13.34 16 22 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 23 C 0.15 5.33 5.50 86.36 0.48 5.81 16 24 C -0.11 -3.02 2.67 -10.71 -0.03 -3.05 16 25 H 0.08 2.50 8.14 -2.39 -0.02 2.48 16 26 C -0.14 -2.95 9.05 71.98 0.65 -2.30 16 27 O 0.11 3.18 11.03 65.72 0.72 3.90 16 28 N -0.40 -11.28 11.50 -172.03 -1.98 -13.26 16 29 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 30 H 0.10 0.69 8.14 -2.39 -0.02 0.67 16 31 H 0.07 0.76 8.14 -2.38 -0.02 0.74 16 32 H 0.07 1.15 8.14 -2.38 -0.02 1.13 16 33 H 0.06 1.14 8.14 -2.38 -0.02 1.12 16 34 H 0.21 4.19 8.06 -2.91 -0.02 4.17 16 35 H 0.41 11.94 6.55 -92.71 -0.61 11.33 16 36 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 37 H 0.07 2.55 8.14 -2.39 -0.02 2.53 16 38 H 0.05 2.60 6.06 -2.39 -0.01 2.58 16 39 H 0.00 -0.03 7.74 -2.39 -0.02 -0.05 16 40 H 0.25 14.24 8.31 -92.71 -0.77 13.46 16 41 H 0.06 2.16 7.93 -2.39 -0.02 2.14 16 42 H 0.02 0.73 6.64 -2.39 -0.02 0.72 16 43 H 0.06 1.18 7.54 -2.38 -0.02 1.17 16 44 H 0.07 1.34 8.14 -2.38 -0.02 1.32 16 45 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 Total: -1.00 -64.86 369.16 2.75 -62.11 By element: Atomic # 1 Polarization: 18.55 SS G_CDS: 0.40 Total: 18.95 kcal Atomic # 6 Polarization: 8.67 SS G_CDS: 6.02 Total: 14.69 kcal Atomic # 7 Polarization: -114.87 SS G_CDS: -5.43 Total: -120.30 kcal Atomic # 8 Polarization: -21.61 SS G_CDS: -0.27 Total: -21.87 kcal Atomic # 14 Polarization: 44.40 SS G_CDS: 2.03 Total: 46.43 kcal Total: -64.86 2.75 -62.11 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000942521258.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.024 kcal (2) G-P(sol) polarization free energy of solvation -64.862 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.838 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.752 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.109 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds