Wall clock time and date at job start Tue Mar 31 2020 14:06:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42896 * 114.00471 * 2 1 4 4 C 1.50706 * 109.47015 * 180.02562 * 3 2 1 5 5 C 1.35314 * 126.66386 * 90.32006 * 4 3 2 6 6 C 1.42275 * 103.91591 * 180.02562 * 5 4 3 7 7 C 1.48332 * 126.93352 * 179.88537 * 6 5 4 8 8 O 1.21493 * 120.00240 * 359.71331 * 7 6 5 9 9 N 1.34778 * 119.99825 * 179.70952 * 7 6 5 10 10 C 1.46502 * 120.00015 * 179.97438 * 9 7 6 11 11 H 1.08997 * 109.45761 * 35.00443 * 10 9 7 12 12 C 1.53043 * 109.44963 * 275.03571 * 10 9 7 13 13 C 1.53195 * 109.31066 * 301.35179 * 12 10 9 14 14 N 1.46922 * 108.77658 * 305.36274 * 13 12 10 15 15 C 1.36940 * 120.63115 * 233.63222 * 14 13 12 16 16 H 1.07995 * 119.99861 * 27.66186 * 15 14 13 17 17 C 1.38813 * 119.99797 * 207.66273 * 15 14 13 18 18 N 1.31619 * 120.00153 * 17.36978 * 17 15 14 19 19 Si 1.86799 * 119.99979 * 197.37234 * 17 15 14 20 20 H 1.48505 * 109.47059 * 0.02562 * 19 17 15 21 21 H 1.48500 * 109.47395 * 119.99619 * 19 17 15 22 22 H 1.48493 * 109.47139 * 240.00284 * 19 17 15 23 23 C 1.46932 * 118.73867 * 53.60941 * 14 13 12 24 24 C 1.53042 * 109.45862 * 154.97667 * 10 9 7 25 25 H 1.08998 * 109.49736 * 178.62605 * 24 10 9 26 26 C 1.53006 * 109.49648 * 298.68848 * 24 10 9 27 27 N 1.30978 * 106.12525 * 359.62789 * 6 5 4 28 28 O 1.20905 * 111.44011 * 0.23350 * 27 6 5 29 29 H 1.09003 * 109.46726 * 59.99869 * 1 2 3 30 30 H 1.08993 * 109.47470 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.46804 * 300.00592 * 1 2 3 32 32 H 1.08989 * 109.47211 * 59.99609 * 3 2 1 33 33 H 1.09007 * 109.46605 * 299.99551 * 3 2 1 34 34 H 1.08001 * 128.04156 * 359.94898 * 5 4 3 35 35 H 0.97004 * 120.00031 * 0.02562 * 9 7 6 36 36 H 1.08994 * 109.49471 * 61.30050 * 12 10 9 37 37 H 1.09000 * 109.49441 * 181.39895 * 12 10 9 38 38 H 1.09003 * 109.58315 * 185.57822 * 13 12 10 39 39 H 1.08992 * 109.58691 * 65.15494 * 13 12 10 40 40 H 0.97001 * 119.99901 * 179.97438 * 18 17 15 41 41 H 1.08994 * 109.58427 * 186.59869 * 23 14 13 42 42 H 1.09006 * 109.58324 * 66.17951 * 23 14 13 43 43 H 1.09001 * 109.46642 * 60.00329 * 26 24 10 44 44 H 1.09001 * 109.47225 * 179.97438 * 26 24 10 45 45 H 1.08994 * 109.47090 * 300.00388 * 26 24 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5126 1.1862 -0.0006 5 6 4.3181 1.1286 -1.0864 6 6 5.6260 1.0211 -0.5368 7 6 6.9023 0.9215 -1.2861 8 8 6.8951 0.9219 -2.5010 9 7 8.0700 0.8307 -0.6192 10 6 9.3305 0.7319 -1.3592 11 1 9.2648 1.3278 -2.2695 12 6 9.5932 -0.7308 -1.7251 13 6 9.6504 -1.5707 -0.4452 14 7 10.6494 -0.9863 0.4597 15 6 11.6614 -1.7542 0.9712 16 1 12.0175 -2.6134 0.4224 17 6 12.2294 -1.4280 2.1951 18 7 11.5987 -0.6175 3.0183 19 14 13.8890 -2.1395 2.6738 20 1 14.3856 -3.0152 1.5821 21 1 14.8549 -1.0344 2.8993 22 1 13.7460 -2.9341 3.9201 23 6 10.5424 0.4378 0.8051 24 6 10.4752 1.2552 -0.4887 25 1 11.4167 1.1593 -1.0295 26 6 10.2280 2.7269 -0.1507 27 7 5.4760 1.0334 0.7643 28 8 4.3109 1.1246 1.0740 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8899 32 1 1.6887 1.8463 0.8899 33 1 1.6887 1.8462 -0.8901 34 1 4.0341 1.1563 -2.1280 35 1 8.0757 0.8301 0.3508 36 1 8.7893 -1.0959 -2.3642 37 1 10.5431 -0.8085 -2.2541 38 1 9.9349 -2.5937 -0.6920 39 1 8.6734 -1.5675 0.0379 40 1 11.9955 -0.3900 3.8737 41 1 11.4154 0.7401 1.3835 42 1 9.6381 0.6049 1.3903 43 1 9.2870 2.8221 0.3911 44 1 11.0433 3.0991 0.4697 45 1 10.1774 3.3076 -1.0716 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000943467875.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:06:01 Heat of formation + Delta-G solvation = -15.394711 kcal Electronic energy + Delta-G solvation = -27941.963745 eV Core-core repulsion = 23963.068587 eV Total energy + Delta-G solvation = -3978.895158 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -46.27232 -41.32494 -39.24030 -38.90637 -36.03383 -35.21904 -34.10641 -33.58928 -33.40822 -31.34238 -28.71890 -27.60391 -27.37540 -26.52619 -25.77431 -24.02029 -23.63449 -22.64732 -21.43788 -20.20318 -19.13092 -19.05829 -18.66699 -18.07949 -17.21742 -16.93607 -16.78926 -16.64279 -16.30390 -16.17923 -15.68591 -15.41335 -15.24188 -14.86086 -14.76031 -14.69393 -14.33898 -13.81320 -13.66048 -13.20955 -13.12037 -12.97824 -12.83108 -12.63757 -12.59861 -12.53786 -12.38095 -12.18605 -11.84316 -11.76833 -11.63496 -11.58843 -11.40359 -11.17692 -10.75921 -10.69767 -10.58452 -10.15590 -8.70673 -7.89288 -5.34428 -0.06049 0.47145 1.45086 1.47442 1.57721 1.74270 1.89778 2.01222 2.49655 2.81119 3.00227 3.25144 3.46995 3.61981 3.74895 3.80634 3.96278 4.02605 4.08914 4.13031 4.28500 4.41679 4.51664 4.52628 4.58681 4.59394 4.67402 4.68289 4.77678 4.80409 4.90017 4.95444 4.96387 5.02458 5.05847 5.23596 5.29787 5.41349 5.48805 5.62745 5.71600 6.11918 6.26192 6.36932 6.82344 6.97192 7.12645 7.82002 8.34364 9.16853 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.017969 B = 0.002929 C = 0.002756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1557.837529 B = 9556.891603 C =10155.918207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.418 6.418 3 C 0.145 3.855 4 C -0.031 4.031 5 C -0.159 4.159 6 C -0.050 4.050 7 C 0.597 3.403 8 O -0.551 6.551 9 N -0.693 5.693 10 C 0.164 3.836 11 H 0.090 0.910 12 C -0.134 4.134 13 C 0.148 3.852 14 N -0.607 5.607 15 C -0.263 4.263 16 H 0.065 0.935 17 C -0.048 4.048 18 N -0.931 5.931 19 Si 0.966 3.034 20 H -0.268 1.268 21 H -0.288 1.288 22 H -0.294 1.294 23 C 0.187 3.813 24 C -0.115 4.115 25 H 0.082 0.918 26 C -0.133 4.133 27 N -0.344 5.344 28 O 0.136 5.864 29 H 0.063 0.937 30 H 0.092 0.908 31 H 0.060 0.940 32 H 0.101 0.899 33 H 0.121 0.879 34 H 0.202 0.798 35 H 0.405 0.595 36 H 0.064 0.936 37 H 0.078 0.922 38 H 0.051 0.949 39 H 0.004 0.996 40 H 0.250 0.750 41 H 0.060 0.940 42 H -0.003 1.003 43 H 0.046 0.954 44 H 0.057 0.943 45 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.896 8.092 -8.082 23.822 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.338 6.338 3 C 0.068 3.932 4 C -0.094 4.094 5 C -0.181 4.181 6 C -0.208 4.208 7 C 0.382 3.618 8 O -0.429 6.429 9 N -0.344 5.344 10 C 0.060 3.940 11 H 0.108 0.892 12 C -0.174 4.174 13 C 0.022 3.978 14 N -0.330 5.330 15 C -0.393 4.393 16 H 0.083 0.917 17 C -0.243 4.243 18 N -0.577 5.577 19 Si 0.795 3.205 20 H -0.193 1.193 21 H -0.215 1.215 22 H -0.221 1.221 23 C 0.061 3.939 24 C -0.136 4.136 25 H 0.100 0.900 26 C -0.190 4.190 27 N -0.042 5.042 28 O 0.055 5.945 29 H 0.082 0.918 30 H 0.110 0.890 31 H 0.078 0.922 32 H 0.119 0.881 33 H 0.139 0.861 34 H 0.219 0.781 35 H 0.242 0.758 36 H 0.083 0.917 37 H 0.097 0.903 38 H 0.070 0.930 39 H 0.022 0.978 40 H 0.059 0.941 41 H 0.079 0.921 42 H 0.015 0.985 43 H 0.065 0.935 44 H 0.076 0.924 45 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -19.767 7.873 -7.823 22.670 hybrid contribution 0.535 -0.422 0.509 0.850 sum -19.232 7.451 -7.314 21.884 Atomic orbital electron populations 1.23007 0.77840 1.04161 1.01922 1.87936 1.22608 1.27335 1.95900 1.20981 0.80223 0.86097 1.05862 1.24646 0.96580 1.03618 0.84588 1.22730 0.88483 1.04145 1.02739 1.23602 0.97430 1.09361 0.90379 1.17030 0.82045 0.76508 0.86219 1.90736 1.86915 1.52168 1.13061 1.46091 1.05715 1.71506 1.11096 1.20965 0.81734 0.96559 0.94745 0.89159 1.22263 1.01885 0.95357 0.97921 1.20904 0.90852 0.95882 0.90178 1.44308 1.29115 1.05792 1.53797 1.19511 1.09903 1.10083 0.99807 0.91734 1.25760 1.02577 1.00800 0.95204 1.70181 1.38134 1.40531 1.08842 0.85228 0.80177 0.77612 0.77528 1.19272 1.21458 1.22111 1.20609 0.98719 0.82356 0.92201 1.21952 0.97544 0.95981 0.98094 0.89973 1.21669 1.01351 0.94263 1.01763 1.74281 0.98308 1.15533 1.16081 1.84777 1.11061 1.64499 1.34175 0.91807 0.88952 0.92151 0.88069 0.86144 0.78088 0.75814 0.91691 0.90340 0.93020 0.97840 0.94060 0.92149 0.98470 0.93516 0.92386 0.91177 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 11.01 113.37 1.25 1.44 16 2 O -0.42 -6.47 10.69 -148.98 -1.59 -8.06 16 3 C 0.15 1.58 6.50 71.24 0.46 2.05 16 4 C -0.03 -0.62 7.10 25.01 0.18 -0.44 16 5 C -0.16 -3.64 10.92 22.60 0.25 -3.40 16 6 C -0.05 -1.53 7.19 42.96 0.31 -1.23 16 7 C 0.60 20.55 7.81 86.93 0.68 21.23 16 8 O -0.55 -20.46 16.61 -3.69 -0.06 -20.52 16 9 N -0.69 -24.38 3.59 -444.81 -1.60 -25.98 16 10 C 0.16 5.69 2.21 45.02 0.10 5.79 16 11 H 0.09 2.97 7.58 -2.39 -0.02 2.96 16 12 C -0.13 -4.90 5.77 30.67 0.18 -4.72 16 13 C 0.15 6.45 6.26 86.36 0.54 7.00 16 14 N -0.61 -30.61 2.99 -699.11 -2.09 -32.70 16 15 C -0.26 -14.55 9.59 84.03 0.81 -13.74 16 16 H 0.06 3.52 7.89 -2.91 -0.02 3.49 16 17 C -0.05 -2.67 4.91 84.86 0.42 -2.25 16 18 N -0.93 -54.78 11.19 21.65 0.24 -54.54 16 19 Si 0.97 45.07 29.59 68.60 2.03 47.10 16 20 H -0.27 -11.97 7.11 99.48 0.71 -11.27 16 21 H -0.29 -13.29 7.11 99.48 0.71 -12.58 16 22 H -0.29 -13.79 7.11 99.48 0.71 -13.08 16 23 C 0.19 8.80 4.30 86.36 0.37 9.17 16 24 C -0.12 -4.22 2.67 -10.72 -0.03 -4.24 16 25 H 0.08 3.01 8.14 -2.39 -0.02 3.00 16 26 C -0.13 -4.11 9.05 71.98 0.65 -3.46 16 27 N -0.34 -10.80 11.84 -49.52 -0.59 -11.39 16 28 O 0.14 3.50 11.18 71.93 0.80 4.31 16 29 H 0.06 0.24 8.14 -2.39 -0.02 0.22 16 30 H 0.09 0.64 8.14 -2.39 -0.02 0.62 16 31 H 0.06 0.28 8.14 -2.39 -0.02 0.26 16 32 H 0.10 0.65 8.14 -2.39 -0.02 0.63 16 33 H 0.12 0.56 8.14 -2.38 -0.02 0.54 16 34 H 0.20 3.64 8.06 -2.91 -0.02 3.62 16 35 H 0.41 15.30 6.49 -92.71 -0.60 14.70 16 36 H 0.06 2.28 8.14 -2.39 -0.02 2.26 16 37 H 0.08 2.76 8.14 -2.39 -0.02 2.74 16 38 H 0.05 2.24 7.93 -2.39 -0.02 2.22 16 39 H 0.00 0.17 7.74 -2.39 -0.02 0.15 16 40 H 0.25 14.25 8.31 -92.71 -0.77 13.48 16 41 H 0.06 3.24 6.03 -2.39 -0.01 3.22 16 42 H 0.00 -0.13 6.64 -2.38 -0.02 -0.15 16 43 H 0.05 1.46 7.54 -2.39 -0.02 1.45 16 44 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 45 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 Total: -1.00 -70.22 369.91 3.71 -66.51 By element: Atomic # 1 Polarization: 21.66 SS G_CDS: 0.40 Total: 22.07 kcal Atomic # 6 Polarization: 7.04 SS G_CDS: 6.16 Total: 13.20 kcal Atomic # 7 Polarization: -120.56 SS G_CDS: -4.04 Total: -124.60 kcal Atomic # 8 Polarization: -23.42 SS G_CDS: -0.85 Total: -24.27 kcal Atomic # 14 Polarization: 45.07 SS G_CDS: 2.03 Total: 47.10 kcal Total: -70.22 3.71 -66.51 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000943467875.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.117 kcal (2) G-P(sol) polarization free energy of solvation -70.217 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.100 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.705 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.512 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.395 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds