Wall clock time and date at job start Tue Mar 31 2020 14:06:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42903 * 114.00184 * 2 1 4 4 C 1.50699 * 109.47179 * 180.02562 * 3 2 1 5 5 C 1.35313 * 126.66587 * 89.71251 * 4 3 2 6 6 C 1.42272 * 103.91897 * 179.87724 * 5 4 3 7 7 C 1.48335 * 126.93660 * 180.13647 * 6 5 4 8 8 O 1.21496 * 120.00331 * 0.32651 * 7 6 5 9 9 N 1.34773 * 119.99692 * 180.32181 * 7 6 5 10 10 C 1.46510 * 119.99769 * 179.97438 * 9 7 6 11 11 H 1.09000 * 109.45747 * 325.02878 * 10 9 7 12 12 C 1.53040 * 109.45770 * 85.00303 * 10 9 7 13 13 C 1.53194 * 109.31066 * 58.65678 * 12 10 9 14 14 N 1.46925 * 108.78014 * 54.63601 * 13 12 10 15 15 C 1.36934 * 120.63422 * 126.36302 * 14 13 12 16 16 H 1.07993 * 120.00584 * 207.68697 * 15 14 13 17 17 C 1.38813 * 119.99691 * 27.69605 * 15 14 13 18 18 N 1.31616 * 120.00019 * 17.35262 * 17 15 14 19 19 Si 1.86801 * 119.99959 * 197.36056 * 17 15 14 20 20 H 1.48496 * 109.47260 * 59.99075 * 19 17 15 21 21 H 1.48498 * 109.47347 * 179.97438 * 19 17 15 22 22 H 1.48504 * 109.46877 * 299.99525 * 19 17 15 23 23 C 1.46929 * 118.73233 * 306.39184 * 14 13 12 24 24 C 1.53045 * 109.45836 * 205.07191 * 10 9 7 25 25 H 1.09001 * 109.49233 * 181.39862 * 24 10 9 26 26 C 1.52999 * 109.49839 * 61.29566 * 24 10 9 27 27 N 1.30984 * 106.12437 * 0.38422 * 6 5 4 28 28 O 1.20902 * 111.43782 * 359.75232 * 27 6 5 29 29 H 1.08999 * 109.46732 * 60.00308 * 1 2 3 30 30 H 1.08997 * 109.46949 * 299.99814 * 1 2 3 31 31 H 1.09003 * 109.47268 * 179.97438 * 1 2 3 32 32 H 1.09005 * 109.46755 * 300.00222 * 3 2 1 33 33 H 1.08993 * 109.47174 * 59.99779 * 3 2 1 34 34 H 1.08000 * 128.04462 * 359.97438 * 5 4 3 35 35 H 0.97001 * 120.00589 * 0.02562 * 9 7 6 36 36 H 1.09006 * 109.49389 * 178.60461 * 12 10 9 37 37 H 1.08997 * 109.49788 * 298.70418 * 12 10 9 38 38 H 1.09006 * 109.58111 * 174.42024 * 13 12 10 39 39 H 1.09001 * 109.58734 * 294.83953 * 13 12 10 40 40 H 0.97004 * 119.99578 * 180.02562 * 18 17 15 41 41 H 1.09002 * 109.58251 * 173.39488 * 23 14 13 42 42 H 1.09001 * 109.58833 * 293.67303 * 23 14 13 43 43 H 1.09001 * 109.47152 * 60.00090 * 26 24 10 44 44 H 1.08995 * 109.46814 * 179.97438 * 26 24 10 45 45 H 1.08999 * 109.47349 * 299.99676 * 26 24 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5126 1.1864 -0.0006 5 6 4.3172 1.1174 -1.0864 6 6 5.6258 1.0194 -0.5368 7 6 6.9020 0.9187 -1.2861 8 8 6.8950 0.9204 -2.5011 9 7 8.0694 0.8253 -0.6192 10 6 9.3299 0.7253 -1.3592 11 1 9.1715 0.1475 -2.2698 12 6 9.8193 2.1286 -1.7245 13 6 10.0080 2.9485 -0.4443 14 7 10.9028 2.2139 0.4604 15 6 12.0230 2.8127 0.9720 16 1 12.8800 2.2137 1.2420 17 6 12.0568 4.1897 1.1436 18 7 10.9362 4.8801 1.1477 19 14 13.6927 5.0630 1.3687 20 1 14.5469 4.8289 0.1767 21 1 13.4578 6.5204 1.5302 22 1 14.3740 4.5340 2.5775 23 6 10.5731 0.8242 0.8051 24 6 10.3781 0.0280 -0.4890 25 1 11.3231 -0.0246 -1.0297 26 6 9.9025 -1.3866 -0.1516 27 7 5.4757 1.0305 0.7643 28 8 4.3107 1.1227 1.0740 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 1.6886 1.8464 -0.8900 33 1 1.6887 1.8464 0.8899 34 1 4.0324 1.1345 -2.1280 35 1 8.0751 0.8236 0.3508 36 1 10.7697 2.0561 -2.2535 37 1 9.0829 2.6159 -2.3634 38 1 10.4499 3.9141 -0.6906 39 1 9.0427 3.0988 0.0390 40 1 10.9600 5.8425 1.2673 41 1 11.3878 0.3880 1.3832 42 1 9.6552 0.8013 1.3925 43 1 9.7612 -1.9518 -1.0729 44 1 10.6496 -1.8829 0.4677 45 1 8.9583 -1.3329 0.3903 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000943467877.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:06:07 Heat of formation + Delta-G solvation = -15.679123 kcal Electronic energy + Delta-G solvation = -27918.832336 eV Core-core repulsion = 23939.924845 eV Total energy + Delta-G solvation = -3978.907491 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -46.27627 -41.33174 -39.24775 -38.90716 -36.09082 -35.22878 -34.24057 -33.58945 -32.92743 -31.74604 -28.72392 -27.48296 -27.38586 -26.52303 -25.75679 -23.99744 -23.60508 -22.79157 -21.45157 -20.20352 -19.12058 -19.06585 -18.63731 -18.08534 -17.21030 -16.94594 -16.79504 -16.65503 -16.29381 -16.18898 -15.69653 -15.48741 -15.27802 -14.87583 -14.76783 -14.65218 -14.29930 -13.81734 -13.60670 -13.22680 -13.19735 -12.99038 -12.75185 -12.62838 -12.57247 -12.41986 -12.38630 -12.25599 -12.00570 -11.74911 -11.64190 -11.56050 -11.45452 -11.16178 -10.76348 -10.70205 -10.55412 -10.17266 -8.71050 -7.89082 -5.34736 -0.06912 0.46546 1.45661 1.48479 1.54881 1.72297 1.90192 1.99797 2.49695 2.79949 2.98938 3.25852 3.46650 3.62363 3.71526 3.79793 3.99267 4.00682 4.06150 4.08860 4.34442 4.41492 4.50721 4.53945 4.59429 4.60161 4.67273 4.70814 4.73747 4.78605 4.91278 4.95706 4.96358 5.02406 5.09781 5.24417 5.35841 5.39981 5.48312 5.61573 5.68574 6.10512 6.25492 6.35841 6.82381 6.96176 7.11544 7.82468 8.34561 9.17018 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.018279 B = 0.002931 C = 0.002729 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1531.405102 B = 9552.051887 C =10257.667765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.415 6.415 3 C 0.145 3.855 4 C -0.030 4.030 5 C -0.161 4.161 6 C -0.050 4.050 7 C 0.596 3.404 8 O -0.553 6.553 9 N -0.691 5.691 10 C 0.164 3.836 11 H 0.088 0.912 12 C -0.143 4.143 13 C 0.187 3.813 14 N -0.607 5.607 15 C -0.262 4.262 16 H 0.071 0.929 17 C -0.052 4.052 18 N -0.936 5.936 19 Si 0.968 3.032 20 H -0.278 1.278 21 H -0.297 1.297 22 H -0.274 1.274 23 C 0.148 3.852 24 C -0.105 4.105 25 H 0.088 0.912 26 C -0.134 4.134 27 N -0.342 5.342 28 O 0.137 5.863 29 H 0.061 0.939 30 H 0.059 0.941 31 H 0.095 0.905 32 H 0.118 0.882 33 H 0.101 0.899 34 H 0.200 0.800 35 H 0.406 0.594 36 H 0.071 0.929 37 H 0.051 0.949 38 H 0.051 0.949 39 H -0.008 1.008 40 H 0.249 0.751 41 H 0.062 0.938 42 H 0.012 0.988 43 H 0.065 0.935 44 H 0.071 0.929 45 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.745 -10.566 -3.574 22.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.335 6.335 3 C 0.069 3.931 4 C -0.093 4.093 5 C -0.183 4.183 6 C -0.207 4.207 7 C 0.380 3.620 8 O -0.431 6.431 9 N -0.342 5.342 10 C 0.060 3.940 11 H 0.106 0.894 12 C -0.183 4.183 13 C 0.061 3.939 14 N -0.330 5.330 15 C -0.392 4.392 16 H 0.089 0.911 17 C -0.247 4.247 18 N -0.582 5.582 19 Si 0.796 3.204 20 H -0.204 1.204 21 H -0.223 1.223 22 H -0.199 1.199 23 C 0.022 3.978 24 C -0.126 4.126 25 H 0.106 0.894 26 C -0.192 4.192 27 N -0.040 5.040 28 O 0.056 5.944 29 H 0.080 0.920 30 H 0.078 0.922 31 H 0.113 0.887 32 H 0.136 0.864 33 H 0.119 0.881 34 H 0.217 0.783 35 H 0.243 0.757 36 H 0.090 0.910 37 H 0.070 0.930 38 H 0.069 0.931 39 H 0.010 0.990 40 H 0.058 0.942 41 H 0.080 0.920 42 H 0.029 0.971 43 H 0.084 0.916 44 H 0.090 0.910 45 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -18.675 -10.649 -3.415 21.767 hybrid contribution 0.403 1.230 0.004 1.294 sum -18.272 -9.419 -3.411 20.838 Atomic orbital electron populations 1.23015 0.77846 1.04253 1.01857 1.87924 1.22573 1.27092 1.95894 1.20953 0.80239 0.86182 1.05765 1.24608 0.96541 1.03607 0.84543 1.22729 0.88589 1.04214 1.02772 1.23581 0.97326 1.09383 0.90453 1.17063 0.82171 0.76489 0.86234 1.90737 1.87075 1.52047 1.13254 1.46011 1.05565 1.71584 1.11026 1.20971 0.81971 0.96030 0.95025 0.89360 1.22408 1.00524 0.96609 0.98751 1.20410 0.91237 0.94523 0.87723 1.44276 1.26639 1.09981 1.52057 1.19496 0.92174 0.90797 1.36725 0.91132 1.25815 0.99688 0.98477 1.00741 1.70200 1.26711 1.06387 1.54860 0.85337 0.79874 0.76865 0.78343 1.20409 1.22326 1.19936 1.21084 0.97808 0.84652 0.94249 1.21811 0.98074 0.95408 0.97285 0.89353 1.21706 1.01179 0.94244 1.02086 1.74239 0.98256 1.15554 1.15916 1.84763 1.11060 1.64491 1.34096 0.91994 0.92197 0.88678 0.86408 0.88129 0.78254 0.75734 0.91014 0.93014 0.93083 0.99019 0.94248 0.91952 0.97052 0.91575 0.91004 0.93345 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 11.01 113.37 1.25 1.43 16 2 O -0.41 -6.21 10.69 -148.98 -1.59 -7.80 16 3 C 0.15 1.69 6.50 71.24 0.46 2.15 16 4 C -0.03 -0.61 7.10 25.01 0.18 -0.43 16 5 C -0.16 -3.88 10.92 22.60 0.25 -3.63 16 6 C -0.05 -1.57 7.19 42.96 0.31 -1.26 16 7 C 0.60 21.25 7.81 86.93 0.68 21.93 16 8 O -0.55 -21.61 16.61 -3.70 -0.06 -21.68 16 9 N -0.69 -24.39 3.60 -444.79 -1.60 -25.99 16 10 C 0.16 5.73 2.21 45.02 0.10 5.83 16 11 H 0.09 2.96 7.58 -2.39 -0.02 2.94 16 12 C -0.14 -5.83 5.77 30.67 0.18 -5.65 16 13 C 0.19 9.35 5.05 86.36 0.44 9.79 16 14 N -0.61 -30.36 2.99 -699.08 -2.09 -32.45 16 15 C -0.26 -14.37 9.59 84.03 0.81 -13.56 16 16 H 0.07 3.73 7.89 -2.91 -0.02 3.70 16 17 C -0.05 -2.93 4.91 84.86 0.42 -2.51 16 18 N -0.94 -56.39 11.19 21.65 0.24 -56.15 16 19 Si 0.97 45.29 29.59 68.60 2.03 47.32 16 20 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 21 H -0.30 -14.07 7.11 99.48 0.71 -13.36 16 22 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 23 C 0.15 5.94 5.50 86.36 0.47 6.41 16 24 C -0.11 -3.42 2.67 -10.72 -0.03 -3.45 16 25 H 0.09 2.85 8.14 -2.39 -0.02 2.84 16 26 C -0.13 -3.44 9.05 71.98 0.65 -2.79 16 27 N -0.34 -10.75 11.84 -49.52 -0.59 -11.34 16 28 O 0.14 3.56 11.18 71.91 0.80 4.36 16 29 H 0.06 0.24 8.14 -2.39 -0.02 0.23 16 30 H 0.06 0.27 8.14 -2.39 -0.02 0.25 16 31 H 0.09 0.57 8.14 -2.39 -0.02 0.55 16 32 H 0.12 0.71 8.14 -2.38 -0.02 0.69 16 33 H 0.10 0.75 8.14 -2.39 -0.02 0.73 16 34 H 0.20 3.90 8.06 -2.91 -0.02 3.88 16 35 H 0.41 14.69 6.49 -92.71 -0.60 14.08 16 36 H 0.07 2.85 8.14 -2.38 -0.02 2.83 16 37 H 0.05 2.13 8.14 -2.39 -0.02 2.11 16 38 H 0.05 2.91 6.04 -2.38 -0.01 2.90 16 39 H -0.01 -0.45 7.74 -2.39 -0.02 -0.47 16 40 H 0.25 14.60 8.31 -92.70 -0.77 13.83 16 41 H 0.06 2.44 7.93 -2.39 -0.02 2.42 16 42 H 0.01 0.48 6.65 -2.39 -0.02 0.46 16 43 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 44 H 0.07 1.63 8.14 -2.39 -0.02 1.62 16 45 H 0.05 1.27 7.54 -2.39 -0.02 1.25 16 Total: -1.00 -71.72 369.92 3.70 -68.02 By element: Atomic # 1 Polarization: 21.04 SS G_CDS: 0.40 Total: 21.44 kcal Atomic # 6 Polarization: 8.11 SS G_CDS: 6.16 Total: 14.27 kcal Atomic # 7 Polarization: -121.89 SS G_CDS: -4.04 Total: -125.93 kcal Atomic # 8 Polarization: -24.27 SS G_CDS: -0.85 Total: -25.12 kcal Atomic # 14 Polarization: 45.29 SS G_CDS: 2.03 Total: 47.32 kcal Total: -71.72 3.70 -68.02 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000943467877.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.337 kcal (2) G-P(sol) polarization free energy of solvation -71.720 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.382 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.703 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.016 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.679 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds