Wall clock time and date at job start Tue Mar 31 2020 14:06:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42902 * 114.00071 * 2 1 4 4 C 1.50698 * 109.47573 * 180.02562 * 3 2 1 5 5 C 1.35314 * 126.66645 * 89.70625 * 4 3 2 6 6 C 1.42272 * 103.92204 * 179.88075 * 5 4 3 7 7 C 1.48336 * 126.94078 * 180.13626 * 6 5 4 8 8 O 1.21492 * 119.99556 * 0.33047 * 7 6 5 9 9 N 1.34777 * 120.00009 * 180.32830 * 7 6 5 10 10 C 1.46504 * 119.99732 * 180.02562 * 9 7 6 11 11 H 1.09003 * 109.45768 * 35.00012 * 10 9 7 12 12 C 1.53035 * 109.46016 * 275.02673 * 10 9 7 13 13 C 1.53190 * 109.31118 * 178.60185 * 12 10 9 14 14 N 1.46921 * 108.76428 * 54.65836 * 13 12 10 15 15 C 1.36936 * 120.63280 * 126.40719 * 14 13 12 16 16 H 1.08007 * 120.00123 * 207.66032 * 15 14 13 17 17 C 1.38816 * 120.00126 * 27.66051 * 15 14 13 18 18 N 1.31622 * 119.99823 * 17.36945 * 17 15 14 19 19 Si 1.86798 * 120.00084 * 197.37108 * 17 15 14 20 20 H 1.48497 * 109.47219 * 89.99758 * 19 17 15 21 21 H 1.48497 * 109.46893 * 210.00136 * 19 17 15 22 22 H 1.48505 * 109.47050 * 329.99520 * 19 17 15 23 23 C 1.46931 * 118.73813 * 306.37934 * 14 13 12 24 24 C 1.53037 * 109.45668 * 154.97271 * 10 9 7 25 25 H 1.08993 * 109.50014 * 61.43572 * 24 10 9 26 26 C 1.53003 * 109.49754 * 301.36836 * 24 10 9 27 27 N 1.30984 * 106.12265 * 0.39058 * 6 5 4 28 28 O 1.20910 * 111.44003 * 359.74948 * 27 6 5 29 29 H 1.09003 * 109.47194 * 299.99816 * 1 2 3 30 30 H 1.09001 * 109.47164 * 59.99738 * 1 2 3 31 31 H 1.08997 * 109.47175 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.47091 * 59.99910 * 3 2 1 33 33 H 1.09008 * 109.46840 * 300.00255 * 3 2 1 34 34 H 1.08000 * 128.03954 * 0.02562 * 5 4 3 35 35 H 0.96993 * 119.99686 * 0.02562 * 9 7 6 36 36 H 1.08999 * 109.49713 * 298.57191 * 12 10 9 37 37 H 1.09000 * 109.49681 * 58.66356 * 12 10 9 38 38 H 1.08999 * 109.59864 * 294.86287 * 13 12 10 39 39 H 1.08998 * 109.58490 * 174.43695 * 13 12 10 40 40 H 0.96998 * 119.99842 * 180.02562 * 18 17 15 41 41 H 1.09006 * 109.58549 * 293.82659 * 23 14 13 42 42 H 1.08997 * 109.58543 * 173.39568 * 23 14 13 43 43 H 1.08996 * 109.47172 * 60.00590 * 26 24 10 44 44 H 1.09005 * 109.47017 * 180.02562 * 26 24 10 45 45 H 1.08996 * 109.47098 * 300.00110 * 26 24 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1866 -0.0006 5 6 4.3171 1.1175 -1.0864 6 6 5.6258 1.0195 -0.5369 7 6 6.9020 0.9188 -1.2862 8 8 6.8949 0.9206 -2.5011 9 7 8.0695 0.8255 -0.6192 10 6 9.3300 0.7266 -1.3593 11 1 9.2650 1.3243 -2.2685 12 6 9.5915 -0.7355 -1.7278 13 6 10.8921 -0.8306 -2.5315 14 7 11.9719 -0.2008 -1.7594 15 6 13.1297 -0.8825 -1.4949 16 1 13.7053 -0.6470 -0.6118 17 6 13.5637 -1.8761 -2.3617 18 7 13.0800 -1.9403 -3.5841 19 14 14.8339 -3.1221 -1.7931 20 1 14.1450 -4.2925 -1.1926 21 1 15.6449 -3.5673 -2.9547 22 1 15.7218 -2.4969 -0.7801 23 6 11.7860 1.1745 -1.2769 24 6 10.4751 1.2471 -0.4876 25 1 10.5566 0.6343 0.4100 26 6 10.1964 2.6985 -0.0916 27 7 5.4757 1.0307 0.7643 28 8 4.3106 1.1228 1.0740 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 1.6886 1.8464 0.8900 33 1 1.6885 1.8464 -0.8900 34 1 4.0323 1.1352 -2.1280 35 1 8.0751 0.8238 0.3507 36 1 9.6812 -1.3295 -0.8183 37 1 8.7642 -1.1127 -2.3290 38 1 10.7728 -0.3122 -3.4829 39 1 11.1346 -1.8779 -2.7117 40 1 13.3830 -2.6348 -4.1897 41 1 11.7395 1.8565 -2.1260 42 1 12.6182 1.4501 -0.6293 43 1 9.2623 2.7495 0.4677 44 1 11.0125 3.0689 0.5289 45 1 10.1162 3.3111 -0.9895 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000943467878.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:06:11 Heat of formation + Delta-G solvation = 3.573864 kcal Electronic energy + Delta-G solvation = -27332.623939 eV Core-core repulsion = 23354.551320 eV Total energy + Delta-G solvation = -3978.072619 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -45.34512 -39.81766 -38.46832 -37.68358 -34.62034 -34.26141 -33.16029 -32.47745 -31.18259 -29.85042 -28.23050 -26.15561 -26.01333 -25.64279 -24.17041 -22.93710 -21.92260 -20.99181 -20.12851 -19.29258 -18.19817 -18.07770 -16.96342 -16.76011 -16.63730 -16.35798 -15.92355 -15.39332 -14.85561 -14.68556 -14.30268 -13.97579 -13.84534 -13.56793 -13.39796 -13.28301 -12.82645 -12.75750 -12.63319 -12.12595 -12.05349 -11.83270 -11.49872 -11.31343 -11.07329 -10.83992 -10.68589 -10.65490 -10.37975 -10.33721 -10.21676 -10.18454 -9.99257 -9.95504 -9.79360 -9.52634 -8.77211 -8.42745 -6.69214 -5.78022 -3.20831 0.83035 1.35308 2.47914 2.98225 3.18047 3.39141 3.45880 3.47004 3.47836 3.80335 4.20449 4.48097 4.49770 4.64475 4.75209 4.83264 4.86053 5.03532 5.12567 5.17547 5.19298 5.30346 5.40520 5.50190 5.57006 5.59442 5.87716 5.97351 6.09365 6.23883 6.25438 6.31166 6.44263 6.45539 6.58293 6.66580 6.76666 6.86491 6.95318 7.36525 7.49553 7.67842 7.78076 7.80346 8.18277 8.45023 9.21086 9.84380 10.40761 11.30517 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.023600 B = 0.002412 C = 0.002311 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1186.167526 B =11604.240595 C =12110.569330 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.385 6.385 3 C 0.146 3.854 4 C -0.044 4.044 5 C -0.153 4.153 6 C -0.022 4.022 7 C 0.593 3.407 8 O -0.521 6.521 9 N -0.703 5.703 10 C 0.156 3.844 11 H 0.086 0.914 12 C -0.149 4.149 13 C 0.174 3.826 14 N -0.593 5.593 15 C -0.254 4.254 16 H 0.067 0.933 17 C 0.002 3.998 18 N -0.901 5.901 19 Si 0.903 3.097 20 H -0.288 1.288 21 H -0.291 1.291 22 H -0.279 1.279 23 C 0.156 3.844 24 C -0.115 4.115 25 H 0.072 0.928 26 C -0.143 4.143 27 N -0.324 5.324 28 O 0.130 5.870 29 H 0.046 0.954 30 H 0.047 0.953 31 H 0.092 0.908 32 H 0.078 0.922 33 H 0.089 0.911 34 H 0.184 0.816 35 H 0.401 0.599 36 H 0.056 0.944 37 H 0.054 0.946 38 H 0.022 0.978 39 H 0.091 0.909 40 H 0.254 0.746 41 H 0.021 0.979 42 H 0.059 0.941 43 H 0.046 0.954 44 H 0.055 0.945 45 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.236 8.782 8.642 27.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.304 6.304 3 C 0.069 3.931 4 C -0.107 4.107 5 C -0.175 4.175 6 C -0.181 4.181 7 C 0.376 3.624 8 O -0.395 6.395 9 N -0.353 5.353 10 C 0.054 3.946 11 H 0.104 0.896 12 C -0.189 4.189 13 C 0.047 3.953 14 N -0.315 5.315 15 C -0.384 4.384 16 H 0.084 0.916 17 C -0.197 4.197 18 N -0.545 5.545 19 Si 0.733 3.267 20 H -0.215 1.215 21 H -0.218 1.218 22 H -0.204 1.204 23 C 0.028 3.972 24 C -0.136 4.136 25 H 0.091 0.909 26 C -0.201 4.201 27 N -0.024 5.024 28 O 0.052 5.948 29 H 0.065 0.935 30 H 0.065 0.935 31 H 0.110 0.890 32 H 0.096 0.904 33 H 0.107 0.893 34 H 0.201 0.799 35 H 0.236 0.764 36 H 0.075 0.925 37 H 0.073 0.927 38 H 0.040 0.960 39 H 0.109 0.891 40 H 0.064 0.936 41 H 0.039 0.961 42 H 0.077 0.923 43 H 0.065 0.935 44 H 0.074 0.926 45 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -23.098 8.423 8.586 26.042 hybrid contribution 0.005 -0.518 -0.016 0.519 sum -23.093 7.904 8.570 25.869 Atomic orbital electron populations 1.22828 0.79658 1.03559 1.00444 1.87994 1.20581 1.26249 1.95558 1.20642 0.83054 0.86235 1.03211 1.23905 0.95026 1.05981 0.85818 1.22516 0.89832 1.03607 1.01571 1.23718 0.97224 1.07207 0.89982 1.16857 0.81532 0.77553 0.86472 1.90818 1.86274 1.50072 1.12328 1.46205 1.06107 1.72376 1.10644 1.21197 0.80227 0.98311 0.94905 0.89631 1.22606 1.00771 0.94240 1.01277 1.20772 0.83116 1.00458 0.90923 1.44112 1.15086 1.09150 1.63114 1.19185 1.00327 1.15090 1.03753 0.91575 1.25057 0.98628 1.01365 0.94617 1.70039 1.46092 1.34141 1.04234 0.86281 0.80981 0.81811 0.77628 1.21461 1.21771 1.20436 1.20893 0.92960 0.87948 0.95376 1.21989 0.96752 0.95525 0.99334 0.90925 1.21782 1.00676 0.96535 1.01085 1.74188 0.97199 1.15221 1.15777 1.84782 1.11428 1.65329 1.33251 0.93493 0.93478 0.88990 0.90358 0.89274 0.79913 0.76433 0.92495 0.92684 0.96016 0.89090 0.93567 0.96083 0.92251 0.93508 0.92573 0.92831 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.13 11.01 101.05 1.11 1.24 16 2 O -0.38 -3.02 10.69 -35.23 -0.38 -3.40 16 3 C 0.15 0.86 6.49 36.00 0.23 1.09 16 4 C -0.04 -0.42 7.10 -35.35 -0.25 -0.67 16 5 C -0.15 -1.71 10.92 -39.08 -0.43 -2.13 16 6 C -0.02 -0.31 7.19 -82.52 -0.59 -0.90 16 7 C 0.59 9.70 7.81 -12.10 -0.09 9.61 16 8 O -0.52 -10.05 16.61 5.37 0.09 -9.96 16 9 N -0.70 -10.97 4.36 -54.55 -0.24 -11.21 16 10 C 0.16 2.80 1.88 -67.89 -0.13 2.67 16 11 H 0.09 1.69 7.58 -51.93 -0.39 1.29 16 12 C -0.15 -3.04 5.65 -26.62 -0.15 -3.19 16 13 C 0.17 4.26 5.31 -3.71 -0.02 4.24 16 14 N -0.59 -14.86 2.99 -172.32 -0.52 -15.37 16 15 C -0.25 -6.96 9.59 -15.06 -0.14 -7.11 16 16 H 0.07 1.77 7.89 -52.48 -0.41 1.36 16 17 C 0.00 0.06 4.91 -17.43 -0.09 -0.03 16 18 N -0.90 -26.43 11.19 55.49 0.62 -25.80 16 19 Si 0.90 21.85 29.59 -169.99 -5.03 16.82 16 20 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 21 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 22 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 23 C 0.16 3.22 5.80 -3.71 -0.02 3.19 16 24 C -0.12 -1.96 2.46 -90.50 -0.22 -2.18 16 25 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 26 C -0.14 -1.99 9.03 37.16 0.34 -1.65 16 27 N -0.32 -4.23 11.84 33.30 0.39 -3.84 16 28 O 0.13 1.45 11.18 17.25 0.19 1.65 16 29 H 0.05 0.13 8.14 -51.93 -0.42 -0.29 16 30 H 0.05 0.13 8.14 -51.93 -0.42 -0.29 16 31 H 0.09 0.33 8.14 -51.93 -0.42 -0.10 16 32 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 33 H 0.09 0.32 8.14 -51.92 -0.42 -0.11 16 34 H 0.18 1.74 8.06 -52.49 -0.42 1.32 16 35 H 0.40 5.58 8.07 -40.82 -0.33 5.25 16 36 H 0.06 1.17 8.14 -51.93 -0.42 0.74 16 37 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 38 H 0.02 0.57 8.14 -51.93 -0.42 0.14 16 39 H 0.09 2.49 6.04 -51.93 -0.31 2.18 16 40 H 0.25 7.21 8.31 -40.82 -0.34 6.88 16 41 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 42 H 0.06 1.19 7.93 -51.93 -0.41 0.78 16 43 H 0.05 0.59 7.36 -51.93 -0.38 0.21 16 44 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 45 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 LS Contribution 373.85 15.07 5.63 5.63 Total: -1.00 -32.78 373.85 -6.56 -39.34 By element: Atomic # 1 Polarization: 8.83 SS G_CDS: -6.88 Total: 1.96 kcal Atomic # 6 Polarization: 4.65 SS G_CDS: -0.46 Total: 4.19 kcal Atomic # 7 Polarization: -56.49 SS G_CDS: 0.26 Total: -56.23 kcal Atomic # 8 Polarization: -11.62 SS G_CDS: -0.09 Total: -11.71 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.03 Total: 16.82 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -32.78 -6.56 -39.34 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000943467878.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.912 kcal (2) G-P(sol) polarization free energy of solvation -32.778 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.560 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.338 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.574 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds