Wall clock time and date at job start Tue Mar 31 2020 14:06:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42900 * 113.99930 * 2 1 4 4 C 1.50703 * 109.46577 * 179.97438 * 3 2 1 5 5 N 1.29942 * 125.37688 * 90.34260 * 4 3 2 6 6 C 1.36066 * 108.47263 * 180.12872 * 5 4 3 7 7 C 1.47420 * 126.44498 * 179.82642 * 6 5 4 8 8 O 1.21612 * 120.00160 * 179.68823 * 7 6 5 9 9 N 1.34783 * 120.00119 * 359.40286 * 7 6 5 10 10 C 1.46495 * 120.00184 * 180.27767 * 9 7 6 11 11 H 1.09009 * 109.46013 * 35.00573 * 10 9 7 12 12 C 1.53037 * 109.46352 * 275.03171 * 10 9 7 13 13 C 1.53189 * 109.31311 * 178.59693 * 12 10 9 14 14 N 1.46926 * 108.76374 * 54.65939 * 13 12 10 15 15 C 1.36937 * 120.63305 * 126.40156 * 14 13 12 16 16 H 1.08002 * 120.00276 * 207.66252 * 15 14 13 17 17 C 1.38809 * 119.99825 * 27.66270 * 15 14 13 18 18 N 1.31622 * 120.00012 * 17.36844 * 17 15 14 19 19 Si 1.86804 * 119.99933 * 197.36589 * 17 15 14 20 20 H 1.48500 * 109.47188 * 90.00038 * 19 17 15 21 21 H 1.48504 * 109.47279 * 210.00022 * 19 17 15 22 22 H 1.48498 * 109.47024 * 329.99946 * 19 17 15 23 23 C 1.46927 * 118.73713 * 306.37824 * 14 13 12 24 24 C 1.53042 * 109.45973 * 154.97356 * 10 9 7 25 25 H 1.08999 * 109.49547 * 61.43400 * 24 10 9 26 26 C 1.52993 * 109.49767 * 301.37036 * 24 10 9 27 27 C 1.36092 * 107.10318 * 359.55455 * 6 5 4 28 28 O 1.34043 * 125.38026 * 269.96925 * 4 3 2 29 29 H 1.08999 * 109.47047 * 59.99983 * 1 2 3 30 30 H 1.09000 * 109.46944 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.46842 * 300.00186 * 1 2 3 32 32 H 1.09000 * 109.47286 * 60.00182 * 3 2 1 33 33 H 1.08997 * 109.47065 * 299.99947 * 3 2 1 34 34 H 0.97004 * 119.99463 * 0.28392 * 9 7 6 35 35 H 1.08994 * 109.49463 * 298.56769 * 12 10 9 36 36 H 1.09004 * 109.49896 * 58.65779 * 12 10 9 37 37 H 1.08997 * 109.60308 * 294.86903 * 13 12 10 38 38 H 1.09005 * 109.58034 * 174.43343 * 13 12 10 39 39 H 0.97005 * 120.00027 * 179.97438 * 18 17 15 40 40 H 1.09001 * 109.58886 * 293.82409 * 23 14 13 41 41 H 1.09003 * 109.58818 * 173.39476 * 23 14 13 42 42 H 1.09004 * 109.47027 * 60.00233 * 26 24 10 43 43 H 1.09002 * 109.47186 * 179.97438 * 26 24 10 44 44 H 1.09003 * 109.47665 * 300.00072 * 26 24 10 45 45 H 1.08000 * 126.51882 * 180.29690 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5126 1.1863 0.0006 5 7 4.2635 1.1330 -1.0585 6 6 5.5607 1.0249 -0.6624 7 6 6.7401 0.9319 -1.5419 8 8 7.8530 0.8443 -1.0595 9 7 6.5846 0.9382 -2.8807 10 6 7.7562 0.8396 -3.7547 11 1 8.5001 0.1903 -3.2929 12 6 8.3547 2.2324 -3.9641 13 6 9.5997 2.1209 -4.8497 14 7 9.2348 1.4281 -6.0929 15 6 9.5093 1.9900 -7.3112 16 1 8.8933 1.7534 -8.1661 17 6 10.5795 2.8635 -7.4473 18 7 11.5234 2.8958 -6.5305 19 14 10.6800 3.9933 -8.9315 20 1 9.9942 5.2744 -8.6259 21 1 12.1047 4.2595 -9.2554 22 1 10.0213 3.3440 -10.0933 23 6 8.5702 0.1208 -6.0042 24 6 7.3369 0.2546 -5.1053 25 1 6.6115 0.9162 -5.5789 26 6 6.7079 -1.1236 -4.8917 27 6 5.5649 1.0250 0.6985 28 8 4.2859 1.1258 1.0939 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.6887 1.8464 0.8900 33 1 1.6886 1.8464 -0.8900 34 1 5.6969 1.0080 -3.2655 35 1 7.6197 2.8751 -4.4485 36 1 8.6315 2.6582 -2.9996 37 1 10.3701 1.5534 -4.3277 38 1 9.9725 3.1183 -5.0831 39 1 12.2714 3.5060 -6.6258 40 1 9.2566 -0.6099 -5.5763 41 1 8.2637 -0.2016 -6.9993 42 1 5.8320 -1.0277 -4.2500 43 1 6.4090 -1.5396 -5.8539 44 1 7.4339 -1.7852 -4.4192 45 1 6.4322 0.9574 1.3386 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000943796686.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:06:14 Heat of formation + Delta-G solvation = -36.096028 kcal Electronic energy + Delta-G solvation = -27457.382591 eV Core-core repulsion = 23477.589756 eV Total energy + Delta-G solvation = -3979.792835 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -43.70881 -39.67521 -38.42483 -37.59797 -35.14397 -34.49279 -32.58370 -31.79048 -31.13405 -29.79976 -28.19336 -26.22005 -25.89888 -25.44876 -23.86603 -22.19255 -21.63479 -20.92312 -20.34557 -19.43234 -18.16374 -17.57692 -16.84581 -16.59847 -16.38591 -16.16242 -16.07503 -15.72365 -14.80581 -14.58609 -14.29567 -13.90945 -13.75296 -13.49550 -13.38480 -13.18534 -12.92551 -12.76578 -12.59972 -12.09913 -12.06499 -11.55730 -11.41807 -11.27387 -11.12206 -11.04073 -10.78931 -10.64217 -10.37654 -10.32097 -10.19018 -10.09294 -9.93287 -9.75671 -9.47941 -9.37621 -8.66184 -8.39297 -6.66442 -5.76026 -3.18612 0.84999 1.64310 2.17926 3.07443 3.30425 3.39806 3.43126 3.46699 3.47943 3.79675 4.39713 4.51400 4.56747 4.68044 4.79551 4.81430 4.88954 5.17573 5.18638 5.22556 5.35263 5.38287 5.43839 5.56713 5.63905 5.72724 5.94655 6.04004 6.15700 6.29352 6.32779 6.40349 6.42121 6.50533 6.63977 6.70730 6.80996 6.93246 6.99958 7.16771 7.40331 7.69448 7.75504 7.82233 8.33078 8.47284 9.23352 9.86800 10.43384 11.32480 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.020709 B = 0.002552 C = 0.002476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1351.767825 B =10967.169895 C =11307.596419 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.385 6.385 3 C 0.162 3.838 4 C 0.189 3.811 5 N -0.436 5.436 6 C -0.067 4.067 7 C 0.597 3.403 8 O -0.536 6.536 9 N -0.701 5.701 10 C 0.156 3.844 11 H 0.084 0.916 12 C -0.148 4.148 13 C 0.174 3.826 14 N -0.593 5.593 15 C -0.253 4.253 16 H 0.066 0.934 17 C 0.002 3.998 18 N -0.901 5.901 19 Si 0.902 3.098 20 H -0.288 1.288 21 H -0.292 1.292 22 H -0.279 1.279 23 C 0.155 3.845 24 C -0.114 4.114 25 H 0.072 0.928 26 C -0.143 4.143 27 C 0.019 3.981 28 O -0.191 6.191 29 H 0.049 0.951 30 H 0.093 0.907 31 H 0.047 0.953 32 H 0.083 0.917 33 H 0.099 0.901 34 H 0.404 0.596 35 H 0.056 0.944 36 H 0.054 0.946 37 H 0.021 0.979 38 H 0.090 0.910 39 H 0.254 0.746 40 H 0.021 0.979 41 H 0.058 0.942 42 H 0.048 0.952 43 H 0.054 0.946 44 H 0.052 0.948 45 H 0.234 0.766 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.346 -4.138 15.107 26.476 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.303 6.303 3 C 0.084 3.916 4 C -0.021 4.021 5 N -0.168 5.168 6 C -0.187 4.187 7 C 0.381 3.619 8 O -0.413 6.413 9 N -0.350 5.350 10 C 0.053 3.947 11 H 0.102 0.898 12 C -0.188 4.188 13 C 0.047 3.953 14 N -0.315 5.315 15 C -0.383 4.383 16 H 0.084 0.916 17 C -0.197 4.197 18 N -0.545 5.545 19 Si 0.733 3.267 20 H -0.215 1.215 21 H -0.218 1.218 22 H -0.204 1.204 23 C 0.028 3.972 24 C -0.135 4.135 25 H 0.090 0.910 26 C -0.201 4.201 27 C -0.055 4.055 28 O -0.076 6.076 29 H 0.068 0.932 30 H 0.111 0.889 31 H 0.065 0.935 32 H 0.101 0.899 33 H 0.116 0.884 34 H 0.239 0.761 35 H 0.074 0.926 36 H 0.072 0.928 37 H 0.039 0.961 38 H 0.108 0.892 39 H 0.064 0.936 40 H 0.039 0.961 41 H 0.077 0.923 42 H 0.067 0.933 43 H 0.073 0.927 44 H 0.071 0.929 45 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges -20.516 -4.251 14.804 25.654 hybrid contribution -0.218 0.871 -0.147 0.910 sum -20.734 -3.380 14.657 25.616 Atomic orbital electron populations 1.22840 0.79289 1.03653 1.00582 1.87969 1.20827 1.25907 1.95605 1.20517 0.80810 0.86510 1.03716 1.25591 0.95342 1.02503 0.78626 1.70744 1.01052 1.15177 1.29817 1.22025 0.92184 1.11285 0.93250 1.16713 0.85819 0.77114 0.82260 1.90841 1.24217 1.50941 1.75344 1.46118 1.11592 1.72197 1.05069 1.21152 0.86131 0.98369 0.89048 0.89803 1.22590 1.00918 0.95090 1.00189 1.20770 0.90527 0.99442 0.84534 1.44113 1.68721 1.16011 1.02655 1.19186 1.08090 1.23095 0.87883 0.91598 1.25050 0.94928 1.01793 0.97909 1.70042 1.10181 1.38534 1.35791 0.86288 0.76766 0.81224 0.82470 1.21490 1.21793 1.20449 1.20898 0.90871 0.88768 0.96664 1.21971 1.00220 0.95985 0.95343 0.90982 1.21778 1.00154 0.97043 1.01094 1.25398 0.84714 0.99460 0.95878 1.84371 1.17125 1.68505 1.37630 0.93237 0.88878 0.93471 0.89893 0.88356 0.76148 0.92565 0.92756 0.96072 0.89174 0.93600 0.96121 0.92324 0.93333 0.92696 0.92909 0.74949 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.15 11.01 101.05 1.11 1.26 16 2 O -0.38 -3.27 10.69 -35.23 -0.38 -3.64 16 3 C 0.16 1.14 6.56 36.01 0.24 1.37 16 4 C 0.19 2.03 7.93 -13.08 -0.10 1.92 16 5 N -0.44 -5.66 11.06 -7.65 -0.08 -5.74 16 6 C -0.07 -0.92 6.99 -83.02 -0.58 -1.50 16 7 C 0.60 9.74 7.78 -12.52 -0.10 9.64 16 8 O -0.54 -10.21 16.55 5.27 0.09 -10.13 16 9 N -0.70 -11.08 4.36 -54.84 -0.24 -11.32 16 10 C 0.16 2.83 1.88 -67.89 -0.13 2.70 16 11 H 0.08 1.68 7.58 -51.92 -0.39 1.28 16 12 C -0.15 -3.02 5.65 -26.61 -0.15 -3.17 16 13 C 0.17 4.27 5.31 -3.71 -0.02 4.25 16 14 N -0.59 -14.94 2.99 -172.32 -0.52 -15.45 16 15 C -0.25 -6.95 9.59 -15.06 -0.14 -7.10 16 16 H 0.07 1.77 7.89 -52.49 -0.41 1.36 16 17 C 0.00 0.05 4.91 -17.43 -0.09 -0.03 16 18 N -0.90 -26.47 11.19 55.49 0.62 -25.85 16 19 Si 0.90 21.83 29.59 -169.99 -5.03 16.80 16 20 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 21 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 22 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 23 C 0.16 3.24 5.80 -3.71 -0.02 3.22 16 24 C -0.11 -1.97 2.46 -90.50 -0.22 -2.20 16 25 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 26 C -0.14 -2.05 9.03 37.15 0.34 -1.71 16 27 C 0.02 0.21 11.95 29.96 0.36 0.57 16 28 O -0.19 -2.03 10.73 6.55 0.07 -1.96 16 29 H 0.05 0.17 8.14 -51.93 -0.42 -0.25 16 30 H 0.09 0.35 8.14 -51.93 -0.42 -0.08 16 31 H 0.05 0.14 8.14 -51.93 -0.42 -0.29 16 32 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.40 5.79 8.04 -40.82 -0.33 5.46 16 35 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 36 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 37 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.09 2.47 6.04 -51.93 -0.31 2.16 16 39 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 40 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 41 H 0.06 1.19 7.93 -51.93 -0.41 0.78 16 42 H 0.05 0.65 7.36 -51.93 -0.38 0.26 16 43 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 44 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 45 H 0.23 1.86 8.06 -52.49 -0.42 1.44 16 LS Contribution 374.21 15.07 5.64 5.64 Total: -1.00 -33.57 374.21 -6.21 -39.78 By element: Atomic # 1 Polarization: 9.51 SS G_CDS: -6.87 Total: 2.63 kcal Atomic # 6 Polarization: 8.75 SS G_CDS: 0.49 Total: 9.24 kcal Atomic # 7 Polarization: -58.14 SS G_CDS: -0.22 Total: -58.36 kcal Atomic # 8 Polarization: -15.51 SS G_CDS: -0.22 Total: -15.73 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.03 Total: 16.80 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -33.57 -6.21 -39.78 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000943796686.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.686 kcal (2) G-P(sol) polarization free energy of solvation -33.569 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.883 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.782 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.096 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds