Wall clock time and date at job start Tue Mar 31 2020 14:06:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42899 * 113.99814 * 2 1 4 4 C 1.50701 * 109.46973 * 180.02562 * 3 2 1 5 5 N 1.29933 * 125.38203 * 90.00214 * 4 3 2 6 6 C 1.36066 * 108.48013 * 180.02562 * 5 4 3 7 7 C 1.47426 * 126.44711 * 180.02562 * 6 5 4 8 8 O 1.21609 * 119.99581 * 179.97438 * 7 6 5 9 9 N 1.34770 * 120.00015 * 359.96752 * 7 6 5 10 10 C 1.46501 * 120.00275 * 179.97438 * 9 7 6 11 11 H 1.09006 * 109.45791 * 325.02542 * 10 9 7 12 12 C 1.53044 * 109.45823 * 84.99399 * 10 9 7 13 13 C 1.53185 * 109.31339 * 58.66387 * 12 10 9 14 14 N 1.46930 * 108.77888 * 54.62871 * 13 12 10 15 15 C 1.36934 * 120.62876 * 126.37376 * 14 13 12 16 16 H 1.07996 * 119.99954 * 207.69500 * 15 14 13 17 17 C 1.38814 * 120.00018 * 27.68684 * 15 14 13 18 18 N 1.31615 * 120.00082 * 17.36366 * 17 15 14 19 19 Si 1.86805 * 119.99830 * 197.36323 * 17 15 14 20 20 H 1.48501 * 109.47177 * 90.00081 * 19 17 15 21 21 H 1.48494 * 109.46853 * 210.00357 * 19 17 15 22 22 H 1.48498 * 109.47127 * 330.00303 * 19 17 15 23 23 C 1.46924 * 118.73579 * 306.39569 * 14 13 12 24 24 C 1.53035 * 109.46194 * 205.06765 * 10 9 7 25 25 H 1.09006 * 109.49352 * 181.39443 * 24 10 9 26 26 C 1.52996 * 109.50099 * 61.29235 * 24 10 9 27 27 C 1.36090 * 107.10239 * 0.02562 * 6 5 4 28 28 O 1.34054 * 125.38091 * 270.02494 * 4 3 2 29 29 H 1.09003 * 109.47214 * 299.99279 * 1 2 3 30 30 H 1.08995 * 109.47514 * 59.99345 * 1 2 3 31 31 H 1.09003 * 109.47412 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.46953 * 60.00843 * 3 2 1 33 33 H 1.08999 * 109.47772 * 300.00019 * 3 2 1 34 34 H 0.97009 * 120.00428 * 359.97438 * 9 7 6 35 35 H 1.09004 * 109.49424 * 178.61181 * 12 10 9 36 36 H 1.09004 * 109.49970 * 298.70690 * 12 10 9 37 37 H 1.08995 * 109.59165 * 174.42036 * 13 12 10 38 38 H 1.09008 * 109.58360 * 294.84330 * 13 12 10 39 39 H 0.96998 * 119.99732 * 179.97438 * 18 17 15 40 40 H 1.09006 * 109.58096 * 173.39441 * 23 14 13 41 41 H 1.09001 * 109.58847 * 293.66957 * 23 14 13 42 42 H 1.08999 * 109.47010 * 60.00042 * 26 24 10 43 43 H 1.08998 * 109.47193 * 180.02562 * 26 24 10 44 44 H 1.09004 * 109.47199 * 300.00216 * 26 24 10 45 45 H 1.08002 * 126.52311 * 180.02562 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5125 1.1865 -0.0006 5 7 4.2620 1.1273 -1.0603 6 6 5.5600 1.0239 -0.6653 7 6 6.7387 0.9310 -1.5458 8 8 7.8519 0.8426 -1.0642 9 7 6.5826 0.9439 -2.8844 10 6 7.7540 0.8522 -3.7594 11 1 8.5920 1.3770 -3.3006 12 6 8.1238 -0.6188 -3.9637 13 6 6.9321 -1.3604 -4.5770 14 7 6.5232 -0.6649 -5.8049 15 6 6.4164 -1.3443 -6.9890 16 1 6.5609 -0.8247 -7.9247 17 6 6.1224 -2.7010 -6.9867 18 7 5.6158 -3.2627 -5.9096 19 14 6.4459 -3.7293 -8.5122 20 1 7.8234 -4.2810 -8.4544 21 1 5.4679 -4.8451 -8.5735 22 1 6.3035 -2.8793 -9.7215 23 6 6.2317 0.7736 -5.7382 24 6 7.4313 1.4914 -5.1119 25 1 8.2942 1.4015 -5.7719 26 6 7.0935 2.9700 -4.9104 27 6 5.5652 1.0223 0.6956 28 8 4.2866 1.1245 1.0920 29 1 -0.3634 0.5137 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0277 -0.0005 32 1 1.6886 1.8463 0.8901 33 1 1.6886 1.8465 -0.8899 34 1 5.6946 1.0139 -3.2685 35 1 8.9802 -0.6888 -4.6344 36 1 8.3762 -1.0673 -3.0027 37 1 7.2220 -2.3836 -4.8159 38 1 6.1034 -1.3692 -3.8688 39 1 5.4100 -4.2106 -5.9082 40 1 6.0595 1.1585 -6.7435 41 1 5.3444 0.9387 -5.1270 42 1 7.9464 3.4797 -4.4622 43 1 6.8634 3.4247 -5.8739 44 1 6.2297 3.0588 -4.2515 45 1 6.4329 0.9532 1.3350 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000943796687.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:06:17 Heat of formation + Delta-G solvation = -33.128754 kcal Electronic energy + Delta-G solvation = -28194.379457 eV Core-core repulsion = 24214.715293 eV Total energy + Delta-G solvation = -3979.664164 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -43.54018 -39.72733 -38.22152 -37.57436 -34.97310 -34.20150 -32.43029 -31.63083 -31.04877 -29.93507 -28.01434 -26.04932 -25.87331 -25.37297 -24.01238 -22.09047 -21.59655 -21.06986 -20.47543 -18.48674 -18.31951 -17.39910 -16.76382 -16.59991 -16.20904 -15.99040 -15.85550 -15.24016 -14.80475 -14.62478 -14.25853 -13.86688 -13.68936 -13.57772 -13.27178 -13.14000 -12.89108 -12.73730 -12.49995 -12.07651 -11.87752 -11.46816 -11.33690 -11.32984 -11.04327 -10.91622 -10.77645 -10.68114 -10.31073 -10.16974 -10.16529 -10.01531 -9.89044 -9.69345 -9.38698 -9.22270 -8.55308 -8.41659 -6.63798 -5.74805 -3.17859 1.00094 1.81815 2.35186 3.22340 3.40335 3.47136 3.48198 3.50437 3.57088 3.98243 4.51887 4.55264 4.74332 4.82861 4.96922 4.99649 5.08847 5.21758 5.35650 5.38675 5.40292 5.41106 5.52641 5.54114 5.65109 5.85944 5.95652 6.02681 6.13184 6.20619 6.33064 6.39954 6.49460 6.63767 6.66535 6.70503 6.80674 6.96254 7.00605 7.34235 7.42362 7.72756 7.83055 7.89820 8.45677 8.47837 9.24202 9.87758 10.44207 11.33117 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.011175 B = 0.003823 C = 0.003204 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2504.889690 B = 7322.630474 C = 8737.822455 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.382 6.382 3 C 0.162 3.838 4 C 0.189 3.811 5 N -0.431 5.431 6 C -0.064 4.064 7 C 0.599 3.401 8 O -0.547 6.547 9 N -0.689 5.689 10 C 0.159 3.841 11 H 0.075 0.925 12 C -0.155 4.155 13 C 0.173 3.827 14 N -0.591 5.591 15 C -0.254 4.254 16 H 0.066 0.934 17 C 0.004 3.996 18 N -0.900 5.900 19 Si 0.901 3.099 20 H -0.288 1.288 21 H -0.292 1.292 22 H -0.279 1.279 23 C 0.151 3.849 24 C -0.118 4.118 25 H 0.083 0.917 26 C -0.142 4.142 27 C 0.016 3.984 28 O -0.192 6.192 29 H 0.045 0.955 30 H 0.049 0.951 31 H 0.093 0.907 32 H 0.082 0.918 33 H 0.098 0.902 34 H 0.410 0.590 35 H 0.065 0.935 36 H 0.055 0.945 37 H 0.086 0.914 38 H 0.019 0.981 39 H 0.253 0.747 40 H 0.056 0.944 41 H 0.016 0.984 42 H 0.048 0.952 43 H 0.054 0.946 44 H 0.051 0.949 45 H 0.233 0.767 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.306 12.295 13.441 19.277 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.301 6.301 3 C 0.085 3.915 4 C -0.020 4.020 5 N -0.163 5.163 6 C -0.185 4.185 7 C 0.384 3.616 8 O -0.426 6.426 9 N -0.339 5.339 10 C 0.055 3.945 11 H 0.093 0.907 12 C -0.195 4.195 13 C 0.048 3.952 14 N -0.313 5.313 15 C -0.384 4.384 16 H 0.084 0.916 17 C -0.195 4.195 18 N -0.544 5.544 19 Si 0.732 3.268 20 H -0.215 1.215 21 H -0.218 1.218 22 H -0.205 1.205 23 C 0.024 3.976 24 C -0.139 4.139 25 H 0.101 0.899 26 C -0.200 4.200 27 C -0.058 4.058 28 O -0.078 6.078 29 H 0.064 0.936 30 H 0.068 0.932 31 H 0.112 0.888 32 H 0.100 0.900 33 H 0.116 0.884 34 H 0.248 0.752 35 H 0.084 0.916 36 H 0.073 0.927 37 H 0.104 0.896 38 H 0.037 0.963 39 H 0.063 0.937 40 H 0.075 0.925 41 H 0.033 0.967 42 H 0.067 0.933 43 H 0.073 0.927 44 H 0.070 0.930 45 H 0.249 0.751 Dipole moment (debyes) X Y Z Total from point charges -5.739 11.892 13.143 18.631 hybrid contribution -0.166 -0.531 -0.199 0.590 sum -5.905 11.362 12.944 18.207 Atomic orbital electron populations 1.22833 0.79358 1.03715 1.00408 1.88000 1.20772 1.25726 1.95556 1.20508 0.80822 0.86658 1.03530 1.25625 0.95363 1.02484 0.78548 1.70787 1.01020 1.14756 1.29705 1.21979 0.92227 1.11142 0.93165 1.16679 0.85808 0.76898 0.82257 1.90787 1.24291 1.51911 1.75567 1.45951 1.11874 1.71305 1.04774 1.20981 0.86929 0.97356 0.89228 0.90717 1.22579 1.01555 0.94937 1.00396 1.20732 0.91442 0.96606 0.86447 1.44060 1.77700 1.02931 1.06629 1.19182 1.42071 0.91892 0.85238 0.91642 1.25032 0.98897 0.98458 0.97128 1.70048 1.44608 1.11291 1.28457 0.86304 0.77636 0.80102 0.82800 1.21478 1.21833 1.20459 1.20914 0.92567 0.86021 0.98109 1.21945 1.01982 0.94155 0.95832 0.89883 1.21770 1.01047 0.95962 1.01231 1.25329 0.84765 0.99918 0.95793 1.84361 1.17084 1.68602 1.37724 0.93627 0.93226 0.88847 0.90037 0.88387 0.75220 0.91635 0.92667 0.89574 0.96289 0.93660 0.92499 0.96676 0.93299 0.92704 0.93005 0.75087 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 11.01 101.05 1.11 1.35 16 2 O -0.38 -4.34 10.69 -35.23 -0.38 -4.72 16 3 C 0.16 1.50 6.56 36.01 0.24 1.74 16 4 C 0.19 2.44 7.93 -13.08 -0.10 2.34 16 5 N -0.43 -6.72 11.06 -7.65 -0.08 -6.80 16 6 C -0.06 -1.01 6.99 -83.02 -0.58 -1.59 16 7 C 0.60 10.60 7.78 -12.52 -0.10 10.50 16 8 O -0.55 -10.57 16.55 5.27 0.09 -10.48 16 9 N -0.69 -12.22 3.59 -54.84 -0.20 -12.42 16 10 C 0.16 2.86 2.21 -67.89 -0.15 2.71 16 11 H 0.07 1.32 7.58 -51.93 -0.39 0.93 16 12 C -0.15 -3.17 5.77 -26.61 -0.15 -3.33 16 13 C 0.17 4.26 5.05 -3.71 -0.02 4.24 16 14 N -0.59 -14.72 2.99 -172.32 -0.52 -15.24 16 15 C -0.25 -6.98 9.59 -15.06 -0.14 -7.12 16 16 H 0.07 1.76 7.89 -52.49 -0.41 1.34 16 17 C 0.00 0.10 4.91 -17.43 -0.09 0.02 16 18 N -0.90 -26.54 11.19 55.49 0.62 -25.92 16 19 Si 0.90 21.88 29.59 -169.99 -5.03 16.85 16 20 H -0.29 -6.99 7.11 56.52 0.40 -6.58 16 21 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 22 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 23 C 0.15 3.08 5.50 -3.71 -0.02 3.06 16 24 C -0.12 -2.02 2.67 -90.51 -0.24 -2.26 16 25 H 0.08 1.44 8.14 -51.93 -0.42 1.02 16 26 C -0.14 -1.99 9.05 37.16 0.34 -1.65 16 27 C 0.02 0.20 11.95 29.96 0.36 0.56 16 28 O -0.19 -2.36 10.73 6.52 0.07 -2.29 16 29 H 0.05 0.23 8.14 -51.93 -0.42 -0.20 16 30 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 31 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.41 7.45 6.46 -40.82 -0.26 7.19 16 35 H 0.06 1.33 8.14 -51.93 -0.42 0.90 16 36 H 0.05 1.14 8.14 -51.93 -0.42 0.72 16 37 H 0.09 2.39 6.03 -51.93 -0.31 2.08 16 38 H 0.02 0.50 7.74 -51.92 -0.40 0.10 16 39 H 0.25 7.25 8.31 -40.82 -0.34 6.91 16 40 H 0.06 1.14 7.93 -51.93 -0.41 0.73 16 41 H 0.02 0.32 6.65 -51.93 -0.35 -0.03 16 42 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 43 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 44 H 0.05 0.72 7.54 -51.93 -0.39 0.33 16 45 H 0.23 2.10 8.06 -52.49 -0.42 1.67 16 LS Contribution 370.28 15.07 5.58 5.58 Total: -1.00 -33.64 370.28 -6.12 -39.76 By element: Atomic # 1 Polarization: 11.83 SS G_CDS: -6.72 Total: 5.11 kcal Atomic # 6 Polarization: 10.12 SS G_CDS: 0.45 Total: 10.57 kcal Atomic # 7 Polarization: -60.20 SS G_CDS: -0.18 Total: -60.38 kcal Atomic # 8 Polarization: -17.27 SS G_CDS: -0.22 Total: -17.49 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.03 Total: 16.85 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -33.64 -6.12 -39.76 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000943796687.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.630 kcal (2) G-P(sol) polarization free energy of solvation -33.639 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.009 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.120 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.759 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.129 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds