Wall clock time and date at job start Tue Mar 31 2020 14:06:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42899 * 113.99814 * 2 1 4 4 C 1.50701 * 109.46973 * 180.02562 * 3 2 1 5 5 N 1.29933 * 125.38203 * 90.00214 * 4 3 2 6 6 C 1.36066 * 108.48013 * 180.02562 * 5 4 3 7 7 C 1.47426 * 126.44711 * 180.02562 * 6 5 4 8 8 O 1.21609 * 119.99581 * 179.97438 * 7 6 5 9 9 N 1.34770 * 120.00015 * 359.96752 * 7 6 5 10 10 C 1.46501 * 120.00275 * 179.97438 * 9 7 6 11 11 H 1.09006 * 109.45791 * 325.02542 * 10 9 7 12 12 C 1.53044 * 109.45823 * 84.99399 * 10 9 7 13 13 C 1.53185 * 109.31339 * 58.66387 * 12 10 9 14 14 N 1.46930 * 108.77888 * 54.62871 * 13 12 10 15 15 C 1.36934 * 120.62876 * 126.37376 * 14 13 12 16 16 H 1.07996 * 119.99954 * 207.69500 * 15 14 13 17 17 C 1.38814 * 120.00018 * 27.68684 * 15 14 13 18 18 N 1.31615 * 120.00082 * 17.36366 * 17 15 14 19 19 Si 1.86805 * 119.99830 * 197.36323 * 17 15 14 20 20 H 1.48501 * 109.47177 * 90.00081 * 19 17 15 21 21 H 1.48494 * 109.46853 * 210.00357 * 19 17 15 22 22 H 1.48498 * 109.47127 * 330.00303 * 19 17 15 23 23 C 1.46924 * 118.73579 * 306.39569 * 14 13 12 24 24 C 1.53035 * 109.46194 * 205.06765 * 10 9 7 25 25 H 1.09006 * 109.49352 * 181.39443 * 24 10 9 26 26 C 1.52996 * 109.50099 * 61.29235 * 24 10 9 27 27 C 1.36090 * 107.10239 * 0.02562 * 6 5 4 28 28 O 1.34054 * 125.38091 * 270.02494 * 4 3 2 29 29 H 1.09003 * 109.47214 * 299.99279 * 1 2 3 30 30 H 1.08995 * 109.47514 * 59.99345 * 1 2 3 31 31 H 1.09003 * 109.47412 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.46953 * 60.00843 * 3 2 1 33 33 H 1.08999 * 109.47772 * 300.00019 * 3 2 1 34 34 H 0.97009 * 120.00428 * 359.97438 * 9 7 6 35 35 H 1.09004 * 109.49424 * 178.61181 * 12 10 9 36 36 H 1.09004 * 109.49970 * 298.70690 * 12 10 9 37 37 H 1.08995 * 109.59165 * 174.42036 * 13 12 10 38 38 H 1.09008 * 109.58360 * 294.84330 * 13 12 10 39 39 H 0.96998 * 119.99732 * 179.97438 * 18 17 15 40 40 H 1.09006 * 109.58096 * 173.39441 * 23 14 13 41 41 H 1.09001 * 109.58847 * 293.66957 * 23 14 13 42 42 H 1.08999 * 109.47010 * 60.00042 * 26 24 10 43 43 H 1.08998 * 109.47193 * 180.02562 * 26 24 10 44 44 H 1.09004 * 109.47199 * 300.00216 * 26 24 10 45 45 H 1.08002 * 126.52311 * 180.02562 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5125 1.1865 -0.0006 5 7 4.2620 1.1273 -1.0603 6 6 5.5600 1.0239 -0.6653 7 6 6.7387 0.9310 -1.5458 8 8 7.8519 0.8426 -1.0642 9 7 6.5826 0.9439 -2.8844 10 6 7.7540 0.8522 -3.7594 11 1 8.5920 1.3770 -3.3006 12 6 8.1238 -0.6188 -3.9637 13 6 6.9321 -1.3604 -4.5770 14 7 6.5232 -0.6649 -5.8049 15 6 6.4164 -1.3443 -6.9890 16 1 6.5609 -0.8247 -7.9247 17 6 6.1224 -2.7010 -6.9867 18 7 5.6158 -3.2627 -5.9096 19 14 6.4459 -3.7293 -8.5122 20 1 7.8234 -4.2810 -8.4544 21 1 5.4679 -4.8451 -8.5735 22 1 6.3035 -2.8793 -9.7215 23 6 6.2317 0.7736 -5.7382 24 6 7.4313 1.4914 -5.1119 25 1 8.2942 1.4015 -5.7719 26 6 7.0935 2.9700 -4.9104 27 6 5.5652 1.0223 0.6956 28 8 4.2866 1.1245 1.0920 29 1 -0.3634 0.5137 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0277 -0.0005 32 1 1.6886 1.8463 0.8901 33 1 1.6886 1.8465 -0.8899 34 1 5.6946 1.0139 -3.2685 35 1 8.9802 -0.6888 -4.6344 36 1 8.3762 -1.0673 -3.0027 37 1 7.2220 -2.3836 -4.8159 38 1 6.1034 -1.3692 -3.8688 39 1 5.4100 -4.2106 -5.9082 40 1 6.0595 1.1585 -6.7435 41 1 5.3444 0.9387 -5.1270 42 1 7.9464 3.4797 -4.4622 43 1 6.8634 3.4247 -5.8739 44 1 6.2297 3.0588 -4.2515 45 1 6.4329 0.9532 1.3350 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000943796687.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:06:17 Heat of formation + Delta-G solvation = -58.813210 kcal Electronic energy + Delta-G solvation = -28195.493219 eV Core-core repulsion = 24214.715293 eV Total energy + Delta-G solvation = -3980.777926 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -44.56063 -41.18668 -39.16209 -38.91264 -36.09447 -35.96734 -33.94678 -32.91261 -32.58863 -31.65083 -28.81910 -27.42111 -27.23774 -26.65366 -25.33538 -23.71402 -22.82685 -22.63940 -21.71191 -20.08755 -19.50095 -18.65216 -18.28610 -17.72798 -17.04593 -16.92923 -16.79959 -16.67969 -16.47520 -16.11138 -15.76054 -15.42725 -15.31839 -14.77028 -14.74482 -14.59587 -14.19833 -13.88855 -13.55044 -13.30174 -13.17054 -12.98615 -12.71285 -12.62830 -12.55536 -12.40103 -12.31385 -12.17832 -11.99076 -11.95426 -11.69918 -11.50637 -11.31412 -11.11293 -10.80073 -10.54334 -10.31842 -9.98764 -8.68426 -7.86742 -5.32697 -0.02443 0.72778 1.42344 1.46444 1.48384 1.56886 2.01703 2.22579 2.51120 2.60292 3.18887 3.27951 3.59464 3.67903 3.69869 3.80373 4.05106 4.10181 4.11605 4.22756 4.38583 4.41225 4.51228 4.57209 4.58584 4.62889 4.65002 4.75936 4.77622 4.86492 4.90525 4.96827 5.00263 5.08440 5.15324 5.28629 5.41140 5.46969 5.53904 5.64062 5.72041 6.02611 6.24991 6.37872 6.54116 7.06592 7.13679 7.85128 8.37344 9.19326 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.011175 B = 0.003823 C = 0.003204 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2504.889690 B = 7322.630474 C = 8737.822455 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.420 6.420 3 C 0.159 3.841 4 C 0.192 3.808 5 N -0.465 5.465 6 C -0.104 4.104 7 C 0.599 3.401 8 O -0.568 6.568 9 N -0.690 5.690 10 C 0.164 3.836 11 H 0.087 0.913 12 C -0.143 4.143 13 C 0.189 3.811 14 N -0.607 5.607 15 C -0.262 4.262 16 H 0.072 0.928 17 C -0.051 4.051 18 N -0.936 5.936 19 Si 0.967 3.033 20 H -0.287 1.287 21 H -0.297 1.297 22 H -0.265 1.265 23 C 0.149 3.851 24 C -0.105 4.105 25 H 0.085 0.915 26 C -0.133 4.133 27 C 0.042 3.958 28 O -0.186 6.186 29 H 0.070 0.930 30 H 0.058 0.942 31 H 0.092 0.908 32 H 0.120 0.880 33 H 0.111 0.889 34 H 0.407 0.593 35 H 0.069 0.931 36 H 0.049 0.951 37 H 0.048 0.952 38 H -0.009 1.009 39 H 0.248 0.752 40 H 0.061 0.939 41 H 0.013 0.987 42 H 0.065 0.935 43 H 0.070 0.930 44 H 0.050 0.950 45 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.486 14.239 13.907 20.933 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.339 6.339 3 C 0.083 3.917 4 C -0.018 4.018 5 N -0.197 5.197 6 C -0.223 4.223 7 C 0.385 3.615 8 O -0.448 6.448 9 N -0.340 5.340 10 C 0.060 3.940 11 H 0.105 0.895 12 C -0.183 4.183 13 C 0.063 3.937 14 N -0.330 5.330 15 C -0.392 4.392 16 H 0.089 0.911 17 C -0.246 4.246 18 N -0.582 5.582 19 Si 0.795 3.205 20 H -0.214 1.214 21 H -0.224 1.224 22 H -0.189 1.189 23 C 0.024 3.976 24 C -0.126 4.126 25 H 0.104 0.896 26 C -0.191 4.191 27 C -0.032 4.032 28 O -0.071 6.071 29 H 0.089 0.911 30 H 0.076 0.924 31 H 0.111 0.889 32 H 0.137 0.863 33 H 0.128 0.872 34 H 0.244 0.756 35 H 0.088 0.912 36 H 0.068 0.932 37 H 0.067 0.933 38 H 0.009 0.991 39 H 0.057 0.943 40 H 0.079 0.921 41 H 0.030 0.970 42 H 0.084 0.916 43 H 0.089 0.911 44 H 0.069 0.931 45 H 0.281 0.719 Dipole moment (debyes) X Y Z Total from point charges -5.924 13.880 13.596 20.313 hybrid contribution -0.189 -1.118 -0.283 1.169 sum -6.113 12.761 13.314 19.429 Atomic orbital electron populations 1.23027 0.77379 1.04299 1.02073 1.87930 1.23018 1.27041 1.95915 1.20863 0.78481 0.86393 1.05987 1.26407 0.96685 1.00720 0.78014 1.70736 1.01369 1.16322 1.31247 1.21832 0.91874 1.14485 0.94140 1.16939 0.86291 0.76004 0.82253 1.90758 1.25233 1.52989 1.75840 1.45926 1.11481 1.71509 1.05036 1.20912 0.87577 0.95380 0.90108 0.89519 1.22406 0.99715 0.96523 0.99674 1.20381 0.91868 0.95409 0.86090 1.44280 1.78084 1.04662 1.05931 1.19561 1.40878 0.92403 0.86337 0.91063 1.25803 0.99239 0.99657 0.99915 1.70217 1.46334 1.11041 1.30625 0.85272 0.76972 0.78302 0.79943 1.21416 1.22428 1.18943 1.21071 0.94064 0.83780 0.98729 1.21801 1.00247 0.95811 0.94725 0.89627 1.21690 1.01676 0.93381 1.02306 1.25908 0.85556 0.96706 0.95022 1.84408 1.16951 1.68277 1.37477 0.91098 0.92383 0.88918 0.86272 0.87152 0.75575 0.91230 0.93200 0.93327 0.99106 0.94318 0.92064 0.96955 0.91639 0.91120 0.93135 0.71931 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.35 11.01 113.37 1.25 1.60 16 2 O -0.42 -9.09 10.69 -148.98 -1.59 -10.69 16 3 C 0.16 2.67 6.56 71.24 0.47 3.14 16 4 C 0.19 4.74 7.93 88.39 0.70 5.44 16 5 N -0.46 -14.44 11.06 -293.03 -3.24 -17.68 16 6 C -0.10 -3.21 6.99 40.41 0.28 -2.93 16 7 C 0.60 21.15 7.78 86.66 0.67 21.83 16 8 O -0.57 -21.68 16.55 -4.06 -0.07 -21.74 16 9 N -0.69 -24.53 3.59 -445.67 -1.60 -26.13 16 10 C 0.16 5.81 2.21 45.02 0.10 5.91 16 11 H 0.09 2.93 7.58 -2.38 -0.02 2.91 16 12 C -0.14 -5.96 5.77 30.67 0.18 -5.78 16 13 C 0.19 9.61 5.05 86.36 0.44 10.05 16 14 N -0.61 -30.71 2.99 -699.10 -2.09 -32.80 16 15 C -0.26 -14.49 9.59 84.03 0.81 -13.68 16 16 H 0.07 3.79 7.89 -2.91 -0.02 3.77 16 17 C -0.05 -2.89 4.91 84.86 0.42 -2.48 16 18 N -0.94 -57.18 11.19 21.65 0.24 -56.94 16 19 Si 0.97 45.63 29.59 68.60 2.03 47.66 16 20 H -0.29 -13.42 7.11 99.48 0.71 -12.72 16 21 H -0.30 -14.20 7.11 99.48 0.71 -13.50 16 22 H -0.26 -11.77 7.11 99.48 0.71 -11.06 16 23 C 0.15 6.04 5.50 86.36 0.47 6.51 16 24 C -0.11 -3.44 2.67 -10.72 -0.03 -3.47 16 25 H 0.09 2.80 8.14 -2.38 -0.02 2.78 16 26 C -0.13 -3.36 9.05 71.98 0.65 -2.71 16 27 C 0.04 1.00 11.95 67.32 0.80 1.80 16 28 O -0.19 -4.23 10.73 0.42 0.00 -4.23 16 29 H 0.07 0.52 8.14 -2.39 -0.02 0.50 16 30 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 31 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 32 H 0.12 1.05 8.14 -2.39 -0.02 1.03 16 33 H 0.11 1.53 8.14 -2.39 -0.02 1.51 16 34 H 0.41 15.02 6.46 -92.70 -0.60 14.43 16 35 H 0.07 2.82 8.14 -2.39 -0.02 2.80 16 36 H 0.05 2.10 8.14 -2.39 -0.02 2.08 16 37 H 0.05 2.83 6.03 -2.39 -0.01 2.81 16 38 H -0.01 -0.51 7.74 -2.38 -0.02 -0.53 16 39 H 0.25 14.74 8.31 -92.71 -0.77 13.97 16 40 H 0.06 2.40 7.93 -2.38 -0.02 2.38 16 41 H 0.01 0.52 6.65 -2.39 -0.02 0.51 16 42 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 43 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 44 H 0.05 1.30 7.54 -2.39 -0.02 1.29 16 45 H 0.27 4.12 8.06 -2.91 -0.02 4.10 16 Total: -1.00 -74.83 370.28 1.30 -73.53 By element: Atomic # 1 Polarization: 23.40 SS G_CDS: 0.41 Total: 23.81 kcal Atomic # 6 Polarization: 18.01 SS G_CDS: 7.21 Total: 25.22 kcal Atomic # 7 Polarization: -126.86 SS G_CDS: -6.69 Total: -133.56 kcal Atomic # 8 Polarization: -35.00 SS G_CDS: -1.65 Total: -36.66 kcal Atomic # 14 Polarization: 45.63 SS G_CDS: 2.03 Total: 47.66 kcal Total: -74.83 1.30 -73.53 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000943796687.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.718 kcal (2) G-P(sol) polarization free energy of solvation -74.831 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.113 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.531 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.813 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds