Wall clock time and date at job start Tue Mar 31 2020 14:06:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42900 * 113.99795 * 2 1 4 4 C 1.50704 * 109.47029 * 180.02562 * 3 2 1 5 5 N 1.29936 * 125.37614 * 89.71979 * 4 3 2 6 6 C 1.36065 * 108.47343 * 179.84437 * 5 4 3 7 7 C 1.47431 * 126.44608 * 180.20241 * 6 5 4 8 8 O 1.21610 * 119.99620 * 180.25534 * 7 6 5 9 9 N 1.34777 * 119.99852 * 0.25537 * 7 6 5 10 10 C 1.46500 * 119.99773 * 180.02562 * 9 7 6 11 11 H 1.09003 * 109.45771 * 325.02269 * 10 9 7 12 12 C 1.53033 * 109.46149 * 84.99867 * 10 9 7 13 13 C 1.53197 * 109.31272 * 181.38603 * 12 10 9 14 14 N 1.46929 * 108.77407 * 305.36739 * 13 12 10 15 15 C 1.36937 * 120.62751 * 233.62984 * 14 13 12 16 16 H 1.08006 * 120.00040 * 151.82111 * 15 14 13 17 17 C 1.38811 * 120.00422 * 331.82271 * 15 14 13 18 18 N 1.31621 * 119.99768 * 343.07288 * 17 15 14 19 19 Si 1.86794 * 120.00324 * 163.07450 * 17 15 14 20 20 H 1.48502 * 109.47356 * 89.99981 * 19 17 15 21 21 H 1.48504 * 109.47294 * 210.00104 * 19 17 15 22 22 H 1.48500 * 109.47258 * 329.99776 * 19 17 15 23 23 C 1.46925 * 118.73968 * 53.60703 * 14 13 12 24 24 C 1.53039 * 109.45859 * 205.06866 * 10 9 7 25 25 H 1.08997 * 109.49798 * 298.56758 * 24 10 9 26 26 C 1.53008 * 109.49900 * 58.66220 * 24 10 9 27 27 C 1.36085 * 107.10817 * 0.41716 * 6 5 4 28 28 O 1.34052 * 125.38206 * 270.03037 * 4 3 2 29 29 H 1.08995 * 109.47187 * 179.97438 * 1 2 3 30 30 H 1.09009 * 109.46764 * 299.99674 * 1 2 3 31 31 H 1.09000 * 109.47544 * 59.99095 * 1 2 3 32 32 H 1.09000 * 109.47692 * 300.00259 * 3 2 1 33 33 H 1.09001 * 109.47309 * 60.00791 * 3 2 1 34 34 H 0.97000 * 120.00242 * 0.02562 * 9 7 6 35 35 H 1.08999 * 109.49933 * 301.33312 * 12 10 9 36 36 H 1.08999 * 109.49850 * 61.40031 * 12 10 9 37 37 H 1.09002 * 109.58549 * 65.14806 * 13 12 10 38 38 H 1.08995 * 109.58525 * 185.57919 * 13 12 10 39 39 H 0.96997 * 120.00400 * 180.02562 * 18 17 15 40 40 H 1.08998 * 109.58721 * 66.17929 * 23 14 13 41 41 H 1.09001 * 109.58687 * 186.46206 * 23 14 13 42 42 H 1.08990 * 109.47171 * 59.99684 * 26 24 10 43 43 H 1.08991 * 109.47125 * 180.02562 * 26 24 10 44 44 H 1.09001 * 109.46578 * 300.00189 * 26 24 10 45 45 H 1.07998 * 126.52766 * 179.71329 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1865 -0.0006 5 7 4.2616 1.1222 -1.0604 6 6 5.5600 1.0247 -0.6654 7 6 6.7388 0.9326 -1.5460 8 8 7.8521 0.8448 -1.0644 9 7 6.5827 0.9458 -2.8846 10 6 7.7540 0.8537 -3.7596 11 1 8.5922 1.3782 -3.3007 12 6 8.1233 -0.6173 -3.9641 13 6 9.3690 -0.7083 -4.8512 14 7 9.1175 0.0296 -6.0966 15 6 9.2970 -0.5732 -7.3130 16 1 8.7193 -0.2499 -8.1664 17 6 10.2213 -1.5998 -7.4494 18 7 11.1490 -1.7761 -6.5324 19 14 10.1487 -2.7311 -8.9340 20 1 10.9836 -2.1690 -10.0260 21 1 10.6619 -4.0733 -8.5593 22 1 8.7428 -2.8503 -9.3972 23 6 8.6694 1.4263 -6.0121 24 6 7.4316 1.4933 -5.1120 25 1 6.6097 0.9540 -5.5828 26 6 7.0308 2.9551 -4.9031 27 6 5.5654 1.0234 0.6955 28 8 4.2867 1.1245 1.0920 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8901 31 1 -0.3634 0.5140 -0.8899 32 1 1.6886 1.8465 -0.8899 33 1 1.6887 1.8464 0.8900 34 1 5.6947 1.0162 -3.2686 35 1 8.3301 -1.0781 -2.9982 36 1 7.2947 -1.1369 -4.4452 37 1 10.2205 -0.2687 -4.3317 38 1 9.5781 -1.7530 -5.0812 39 1 11.7952 -2.4932 -6.6278 40 1 9.4639 2.0398 -5.5873 41 1 8.4195 1.7908 -7.0085 42 1 7.8537 3.4939 -4.4336 43 1 6.8009 3.4100 -5.8665 44 1 6.1518 3.0024 -4.2603 45 1 6.4330 0.9537 1.3348 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000943796688.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:06:20 Heat of formation + Delta-G solvation = -62.172561 kcal Electronic energy + Delta-G solvation = -27464.268575 eV Core-core repulsion = 23483.344976 eV Total energy + Delta-G solvation = -3980.923598 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -44.57508 -41.07010 -39.20427 -38.90165 -36.26492 -36.02105 -34.17382 -32.95765 -32.59261 -31.54315 -28.81625 -27.43496 -27.21546 -26.62261 -25.24926 -23.62515 -22.70984 -22.52153 -21.61302 -20.94441 -19.31637 -18.66054 -18.27764 -17.64945 -17.36001 -17.01335 -16.79560 -16.64510 -16.55154 -15.96971 -15.63362 -15.60699 -15.21011 -14.82094 -14.67972 -14.56579 -14.21346 -13.87632 -13.62216 -13.28894 -13.07618 -13.01232 -12.75319 -12.63540 -12.60903 -12.32075 -12.30473 -12.11750 -12.06459 -12.02177 -11.71167 -11.59966 -11.44534 -11.14435 -10.78747 -10.57357 -10.33169 -10.01214 -8.71393 -7.87956 -5.34199 -0.03985 0.71049 1.41093 1.46884 1.48794 1.58538 1.96625 2.15893 2.51251 2.56777 3.18693 3.27989 3.56864 3.67003 3.68867 3.74888 4.00498 4.11981 4.13974 4.23487 4.35195 4.40079 4.53849 4.57480 4.58074 4.63678 4.68569 4.70527 4.83526 4.84681 4.90554 4.92900 4.98625 5.08331 5.12147 5.27101 5.36547 5.46386 5.49413 5.62992 5.68333 6.02934 6.21613 6.37881 6.53005 7.06416 7.12601 7.83186 8.36358 9.19281 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.017871 B = 0.002622 C = 0.002530 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1566.436775 B =10677.949436 C =11065.471061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.417 6.417 3 C 0.159 3.841 4 C 0.193 3.807 5 N -0.458 5.458 6 C -0.099 4.099 7 C 0.598 3.402 8 O -0.570 6.570 9 N -0.692 5.692 10 C 0.169 3.831 11 H 0.065 0.935 12 C -0.133 4.133 13 C 0.184 3.816 14 N -0.610 5.610 15 C -0.262 4.262 16 H 0.072 0.928 17 C -0.054 4.054 18 N -0.937 5.937 19 Si 0.969 3.031 20 H -0.283 1.283 21 H -0.295 1.295 22 H -0.268 1.268 23 C 0.151 3.849 24 C -0.100 4.100 25 H 0.076 0.924 26 C -0.133 4.133 27 C 0.041 3.959 28 O -0.187 6.187 29 H 0.094 0.906 30 H 0.066 0.934 31 H 0.060 0.940 32 H 0.115 0.885 33 H 0.115 0.885 34 H 0.414 0.586 35 H 0.048 0.952 36 H 0.057 0.943 37 H -0.006 1.006 38 H 0.057 0.943 39 H 0.250 0.750 40 H 0.014 0.986 41 H 0.066 0.934 42 H 0.049 0.951 43 H 0.072 0.928 44 H 0.064 0.936 45 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.326 9.601 15.534 29.625 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.337 6.337 3 C 0.083 3.917 4 C -0.017 4.017 5 N -0.189 5.189 6 C -0.218 4.218 7 C 0.384 3.616 8 O -0.450 6.450 9 N -0.342 5.342 10 C 0.064 3.936 11 H 0.083 0.917 12 C -0.173 4.173 13 C 0.057 3.943 14 N -0.332 5.332 15 C -0.392 4.392 16 H 0.090 0.910 17 C -0.249 4.249 18 N -0.583 5.583 19 Si 0.797 3.203 20 H -0.210 1.210 21 H -0.221 1.221 22 H -0.193 1.193 23 C 0.025 3.975 24 C -0.121 4.121 25 H 0.094 0.906 26 C -0.191 4.191 27 C -0.034 4.034 28 O -0.072 6.072 29 H 0.113 0.887 30 H 0.084 0.916 31 H 0.079 0.921 32 H 0.133 0.867 33 H 0.133 0.867 34 H 0.250 0.750 35 H 0.067 0.933 36 H 0.076 0.924 37 H 0.012 0.988 38 H 0.075 0.925 39 H 0.059 0.941 40 H 0.032 0.968 41 H 0.085 0.915 42 H 0.069 0.931 43 H 0.091 0.909 44 H 0.083 0.917 45 H 0.275 0.725 Dipole moment (debyes) X Y Z Total from point charges -22.581 9.279 15.227 28.772 hybrid contribution 0.572 -0.812 -0.217 1.016 sum -22.009 8.467 15.011 27.953 Atomic orbital electron populations 1.23029 0.77376 1.04350 1.02041 1.87916 1.22945 1.26885 1.95924 1.20864 0.78364 0.86452 1.06050 1.26440 0.96692 1.00541 0.77999 1.70693 1.00830 1.16460 1.30968 1.21689 0.91793 1.14536 0.93824 1.17019 0.86269 0.75943 0.82340 1.90820 1.25802 1.52449 1.75909 1.45869 1.11159 1.72216 1.04911 1.20787 0.87283 0.95498 0.90001 0.91667 1.22350 0.99648 0.96512 0.98829 1.20466 0.91650 0.97097 0.85049 1.44339 1.78479 1.08387 1.02038 1.19538 1.15367 1.15321 0.88990 0.91004 1.25868 0.95160 1.03055 1.00782 1.70200 1.17116 1.33227 1.37791 0.85255 0.78034 0.77927 0.79096 1.20962 1.22148 1.19293 1.21073 0.93186 0.85209 0.98035 1.21772 0.99305 0.97401 0.93625 0.90599 1.21701 1.01248 0.93654 1.02482 1.25874 0.85523 0.96715 0.95244 1.84426 1.16900 1.68239 1.37640 0.88734 0.91565 0.92136 0.86731 0.86732 0.74957 0.93286 0.92415 0.98832 0.92502 0.94128 0.96834 0.91504 0.93145 0.90912 0.91701 0.72456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 11.01 113.37 1.25 1.44 16 2 O -0.42 -6.38 10.69 -148.98 -1.59 -7.98 16 3 C 0.16 1.78 6.56 71.24 0.47 2.25 16 4 C 0.19 3.72 7.93 88.39 0.70 4.42 16 5 N -0.46 -11.13 11.06 -293.02 -3.24 -14.37 16 6 C -0.10 -2.60 6.99 40.41 0.28 -2.32 16 7 C 0.60 19.26 7.78 86.66 0.67 19.94 16 8 O -0.57 -21.88 16.55 -4.06 -0.07 -21.95 16 9 N -0.69 -21.36 4.36 -445.67 -1.94 -23.31 16 10 C 0.17 6.11 1.88 45.02 0.08 6.19 16 11 H 0.07 2.65 7.57 -2.39 -0.02 2.63 16 12 C -0.13 -5.64 5.65 30.67 0.17 -5.47 16 13 C 0.18 9.51 5.30 86.36 0.46 9.97 16 14 N -0.61 -31.40 2.99 -699.08 -2.09 -33.49 16 15 C -0.26 -14.58 9.58 84.03 0.81 -13.78 16 16 H 0.07 3.83 7.89 -2.91 -0.02 3.80 16 17 C -0.05 -3.05 4.92 84.86 0.42 -2.63 16 18 N -0.94 -57.18 11.20 21.65 0.24 -56.94 16 19 Si 0.97 45.55 29.59 68.60 2.03 47.58 16 20 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 21 H -0.30 -14.00 7.11 99.48 0.71 -13.29 16 22 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 23 C 0.15 6.27 5.80 86.36 0.50 6.77 16 24 C -0.10 -3.34 2.46 -10.71 -0.03 -3.37 16 25 H 0.08 2.52 8.14 -2.39 -0.02 2.50 16 26 C -0.13 -3.42 9.03 71.98 0.65 -2.77 16 27 C 0.04 0.83 11.95 67.32 0.80 1.63 16 28 O -0.19 -3.53 10.73 0.38 0.00 -3.52 16 29 H 0.09 0.60 8.14 -2.39 -0.02 0.58 16 30 H 0.07 0.20 8.14 -2.38 -0.02 0.18 16 31 H 0.06 0.28 8.14 -2.39 -0.02 0.26 16 32 H 0.11 0.87 8.14 -2.39 -0.02 0.85 16 33 H 0.11 0.53 8.14 -2.39 -0.02 0.51 16 34 H 0.41 11.24 8.04 -92.71 -0.75 10.49 16 35 H 0.05 2.10 8.14 -2.39 -0.02 2.08 16 36 H 0.06 2.41 8.14 -2.39 -0.02 2.39 16 37 H -0.01 -0.36 8.14 -2.39 -0.02 -0.38 16 38 H 0.06 3.30 6.06 -2.39 -0.01 3.28 16 39 H 0.25 14.75 8.31 -92.71 -0.77 13.98 16 40 H 0.01 0.59 8.14 -2.39 -0.02 0.57 16 41 H 0.07 2.64 7.93 -2.39 -0.02 2.62 16 42 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 43 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 44 H 0.06 1.48 7.36 -2.39 -0.02 1.46 16 45 H 0.26 3.58 8.06 -2.91 -0.02 3.56 16 Total: -1.00 -75.12 374.24 0.84 -74.29 By element: Atomic # 1 Polarization: 17.15 SS G_CDS: 0.26 Total: 17.41 kcal Atomic # 6 Polarization: 15.04 SS G_CDS: 7.24 Total: 22.28 kcal Atomic # 7 Polarization: -121.08 SS G_CDS: -7.03 Total: -128.11 kcal Atomic # 8 Polarization: -31.80 SS G_CDS: -1.66 Total: -33.45 kcal Atomic # 14 Polarization: 45.55 SS G_CDS: 2.03 Total: 47.58 kcal Total: -75.12 0.84 -74.29 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000943796688.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.114 kcal (2) G-P(sol) polarization free energy of solvation -75.124 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.011 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.286 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.173 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds