Wall clock time and date at job start Tue Mar 31 2020 14:06:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42896 * 114.00309 * 2 1 4 4 C 1.50698 * 109.47143 * 179.97438 * 3 2 1 5 5 N 1.29941 * 125.38013 * 90.30372 * 4 3 2 6 6 C 1.36063 * 108.47860 * 180.15931 * 5 4 3 7 7 C 1.47415 * 126.45083 * 179.81638 * 6 5 4 8 8 O 1.21614 * 120.00464 * 179.69159 * 7 6 5 9 9 N 1.34778 * 119.99901 * 359.69224 * 7 6 5 10 10 C 1.46502 * 120.00015 * 179.97438 * 9 7 6 11 11 H 1.08997 * 109.45761 * 35.00443 * 10 9 7 12 12 C 1.53043 * 109.44963 * 275.03571 * 10 9 7 13 13 C 1.53195 * 109.31066 * 301.35179 * 12 10 9 14 14 N 1.46922 * 108.77658 * 305.36274 * 13 12 10 15 15 C 1.36940 * 120.63115 * 233.63222 * 14 13 12 16 16 H 1.07995 * 119.99861 * 27.66186 * 15 14 13 17 17 C 1.38813 * 119.99797 * 207.66273 * 15 14 13 18 18 N 1.31619 * 120.00153 * 17.36978 * 17 15 14 19 19 Si 1.86799 * 119.99979 * 197.37234 * 17 15 14 20 20 H 1.48505 * 109.47059 * 0.02562 * 19 17 15 21 21 H 1.48500 * 109.47395 * 119.99619 * 19 17 15 22 22 H 1.48493 * 109.47139 * 240.00284 * 19 17 15 23 23 C 1.46932 * 118.73867 * 53.60941 * 14 13 12 24 24 C 1.53042 * 109.45862 * 154.97667 * 10 9 7 25 25 H 1.08998 * 109.49736 * 178.62605 * 24 10 9 26 26 C 1.53006 * 109.49648 * 298.68848 * 24 10 9 27 27 C 1.36096 * 107.10277 * 359.56054 * 6 5 4 28 28 O 1.34043 * 125.37772 * 269.97122 * 4 3 2 29 29 H 1.09001 * 109.46715 * 179.97438 * 1 2 3 30 30 H 1.08994 * 109.47107 * 299.99874 * 1 2 3 31 31 H 1.09001 * 109.46753 * 59.99950 * 1 2 3 32 32 H 1.08997 * 109.47340 * 59.99875 * 3 2 1 33 33 H 1.09006 * 109.46906 * 300.00036 * 3 2 1 34 34 H 0.97004 * 120.00031 * 359.97438 * 9 7 6 35 35 H 1.08994 * 109.49471 * 61.30050 * 12 10 9 36 36 H 1.09000 * 109.49441 * 181.39895 * 12 10 9 37 37 H 1.09003 * 109.58315 * 185.57822 * 13 12 10 38 38 H 1.08992 * 109.58691 * 65.15494 * 13 12 10 39 39 H 0.97001 * 119.99901 * 179.97438 * 18 17 15 40 40 H 1.08994 * 109.58427 * 186.59869 * 23 14 13 41 41 H 1.09006 * 109.58324 * 66.17951 * 23 14 13 42 42 H 1.09001 * 109.46642 * 60.00329 * 26 24 10 43 43 H 1.09001 * 109.47225 * 179.97438 * 26 24 10 44 44 H 1.08994 * 109.47090 * 300.00388 * 26 24 10 45 45 H 1.07992 * 126.52449 * 180.23773 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5126 1.1863 0.0006 5 7 4.2634 1.1323 -1.0585 6 6 5.5606 1.0238 -0.6624 7 6 6.7400 0.9298 -1.5418 8 8 7.8529 0.8419 -1.0594 9 7 6.5849 0.9413 -2.8806 10 6 7.7570 0.8484 -3.7546 11 1 8.5018 0.1986 -3.2953 12 6 8.3530 2.2433 -3.9578 13 6 7.2925 3.1629 -4.5715 14 7 6.7807 2.5406 -5.8001 15 6 6.7826 3.2289 -6.9839 16 1 7.5163 4.0021 -7.1577 17 6 5.8416 2.9328 -7.9604 18 7 4.7565 2.2577 -7.6455 19 14 6.1152 3.4924 -9.7215 20 1 7.4025 4.2272 -9.8130 21 1 6.1572 2.3081 -10.6164 22 1 5.0040 4.3863 -10.1351 23 6 6.2673 1.1654 -5.7345 24 6 7.3392 0.2683 -5.1078 25 1 8.2061 0.2217 -5.7669 26 6 6.7738 -1.1392 -4.9073 27 6 5.5649 1.0243 0.6986 28 8 4.2858 1.1257 1.0939 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5139 -0.8900 32 1 1.6887 1.8463 0.8899 33 1 1.6887 1.8463 -0.8900 34 1 5.6972 1.0110 -3.2654 35 1 8.6716 2.6463 -2.9965 36 1 9.2102 2.1786 -4.6278 37 1 7.7394 4.1281 -4.8096 38 1 6.4750 3.3010 -3.8640 39 1 4.0987 2.0511 -8.3279 40 1 6.0378 0.8128 -6.7400 41 1 5.3661 1.1407 -5.1218 42 1 5.9062 -1.0919 -4.2492 43 1 6.4760 -1.5518 -5.8713 44 1 7.5359 -1.7764 -4.4588 45 1 6.4320 0.9556 1.3386 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000943796689.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:06:23 Heat of formation + Delta-G solvation = -58.120846 kcal Electronic energy + Delta-G solvation = -28173.708407 eV Core-core repulsion = 24192.960504 eV Total energy + Delta-G solvation = -3980.747903 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -44.55868 -41.17785 -39.15179 -38.90701 -36.07315 -35.91703 -33.67949 -33.54631 -32.54490 -31.26581 -28.82007 -27.55540 -27.21948 -26.64862 -25.34998 -23.76239 -22.75072 -22.56804 -21.69781 -20.09391 -19.48932 -18.68608 -18.28263 -17.73282 -17.04732 -16.92005 -16.76708 -16.67370 -16.46915 -16.13546 -15.74113 -15.35890 -15.27297 -14.75898 -14.73855 -14.63667 -14.22585 -13.88490 -13.61566 -13.31142 -13.09168 -12.94862 -12.79216 -12.63370 -12.57357 -12.50964 -12.31752 -12.14642 -11.97267 -11.80092 -11.72582 -11.51227 -11.27755 -11.12761 -10.80669 -10.55215 -10.30916 -9.97168 -8.67007 -7.86282 -5.31274 -0.01717 0.73368 1.41250 1.46733 1.49300 1.59359 2.07454 2.17680 2.51947 2.59336 3.18966 3.28079 3.59988 3.67621 3.70284 3.83769 4.02756 4.10047 4.16879 4.22669 4.32930 4.41861 4.53062 4.57156 4.58376 4.63230 4.65141 4.72200 4.80161 4.88516 4.90649 4.94467 5.00868 5.07661 5.12084 5.27040 5.34031 5.48393 5.54978 5.65777 5.75684 6.00275 6.26184 6.39864 6.54558 7.06401 7.15759 7.85562 8.38053 9.19786 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.012446 B = 0.003611 C = 0.003093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2249.162515 B = 7752.997388 C = 9050.511662 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.414 6.414 3 C 0.159 3.841 4 C 0.192 3.808 5 N -0.467 5.467 6 C -0.104 4.104 7 C 0.600 3.400 8 O -0.565 6.565 9 N -0.692 5.692 10 C 0.164 3.836 11 H 0.086 0.914 12 C -0.133 4.133 13 C 0.149 3.851 14 N -0.607 5.607 15 C -0.264 4.264 16 H 0.064 0.936 17 C -0.045 4.045 18 N -0.931 5.931 19 Si 0.965 3.035 20 H -0.269 1.269 21 H -0.289 1.289 22 H -0.293 1.293 23 C 0.190 3.810 24 C -0.116 4.116 25 H 0.079 0.921 26 C -0.132 4.132 27 C 0.045 3.955 28 O -0.186 6.186 29 H 0.098 0.902 30 H 0.068 0.932 31 H 0.054 0.946 32 H 0.118 0.882 33 H 0.105 0.895 34 H 0.407 0.593 35 H 0.065 0.935 36 H 0.075 0.925 37 H 0.050 0.950 38 H 0.007 0.993 39 H 0.250 0.750 40 H 0.058 0.942 41 H -0.001 1.001 42 H 0.045 0.955 43 H 0.056 0.944 44 H 0.067 0.933 45 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.846 -4.601 18.168 19.358 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.333 6.333 3 C 0.083 3.917 4 C -0.017 4.017 5 N -0.199 5.199 6 C -0.224 4.224 7 C 0.387 3.613 8 O -0.446 6.446 9 N -0.342 5.342 10 C 0.060 3.940 11 H 0.104 0.896 12 C -0.173 4.173 13 C 0.023 3.977 14 N -0.330 5.330 15 C -0.394 4.394 16 H 0.082 0.918 17 C -0.241 4.241 18 N -0.577 5.577 19 Si 0.793 3.207 20 H -0.193 1.193 21 H -0.216 1.216 22 H -0.220 1.220 23 C 0.064 3.936 24 C -0.136 4.136 25 H 0.098 0.902 26 C -0.190 4.190 27 C -0.030 4.030 28 O -0.071 6.071 29 H 0.117 0.883 30 H 0.086 0.914 31 H 0.073 0.927 32 H 0.135 0.865 33 H 0.122 0.878 34 H 0.244 0.756 35 H 0.084 0.916 36 H 0.093 0.907 37 H 0.069 0.931 38 H 0.024 0.976 39 H 0.059 0.941 40 H 0.076 0.924 41 H 0.016 0.984 42 H 0.065 0.935 43 H 0.075 0.925 44 H 0.086 0.914 45 H 0.282 0.718 Dipole moment (debyes) X Y Z Total from point charges -4.336 -4.825 17.762 18.909 hybrid contribution -0.420 0.581 -0.765 1.049 sum -4.756 -4.244 16.996 18.152 Atomic orbital electron populations 1.23038 0.77422 1.04473 1.01908 1.87898 1.22914 1.26632 1.95896 1.20806 0.78686 0.86547 1.05706 1.26316 0.96582 1.00815 0.78033 1.70774 1.01546 1.16297 1.31304 1.21846 0.91839 1.14545 0.94160 1.16907 0.86285 0.76053 0.82087 1.90759 1.25079 1.53018 1.75742 1.46006 1.11503 1.71560 1.05113 1.20905 0.86848 0.96751 0.89534 0.89558 1.22253 0.98873 0.95830 1.00383 1.20893 0.94097 0.95078 0.87599 1.44302 1.73063 1.11134 1.04530 1.19518 1.09585 1.17417 0.92868 0.91783 1.25723 0.94559 1.01175 1.02651 1.70184 1.09269 1.45220 1.32981 0.85254 0.77510 0.77306 0.80633 1.19320 1.21577 1.22019 1.20569 0.91298 0.82989 0.98750 1.21946 1.00572 0.95842 0.95258 0.90248 1.21658 1.00763 0.95014 1.01555 1.25935 0.85498 0.96572 0.94973 1.84412 1.17001 1.68269 1.37387 0.88347 0.91350 0.92704 0.86463 0.87754 0.75648 0.91633 0.90671 0.93120 0.97554 0.94083 0.92360 0.98356 0.93542 0.92499 0.91375 0.71752 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 11.01 113.37 1.25 1.56 16 2 O -0.41 -8.24 10.69 -148.98 -1.59 -9.84 16 3 C 0.16 2.73 6.56 71.24 0.47 3.20 16 4 C 0.19 4.72 7.93 88.39 0.70 5.43 16 5 N -0.47 -14.51 11.06 -293.04 -3.24 -17.75 16 6 C -0.10 -3.13 6.99 40.41 0.28 -2.85 16 7 C 0.60 20.44 7.78 86.66 0.67 21.12 16 8 O -0.57 -20.49 16.55 -4.07 -0.07 -20.56 16 9 N -0.69 -24.54 3.59 -445.67 -1.60 -26.14 16 10 C 0.16 5.76 2.21 45.02 0.10 5.86 16 11 H 0.09 2.91 7.57 -2.39 -0.02 2.89 16 12 C -0.13 -4.87 5.77 30.67 0.18 -4.69 16 13 C 0.15 6.46 6.26 86.36 0.54 7.00 16 14 N -0.61 -30.54 2.99 -699.11 -2.09 -32.63 16 15 C -0.26 -14.54 9.59 84.03 0.81 -13.74 16 16 H 0.06 3.48 7.89 -2.91 -0.02 3.45 16 17 C -0.05 -2.52 4.91 84.86 0.42 -2.10 16 18 N -0.93 -54.46 11.19 21.65 0.24 -54.22 16 19 Si 0.96 44.77 29.59 68.60 2.03 46.80 16 20 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 21 H -0.29 -13.32 7.11 99.48 0.71 -12.62 16 22 H -0.29 -13.63 7.11 99.48 0.71 -12.92 16 23 C 0.19 8.97 4.30 86.36 0.37 9.34 16 24 C -0.12 -4.31 2.67 -10.72 -0.03 -4.34 16 25 H 0.08 2.97 8.14 -2.39 -0.02 2.95 16 26 C -0.13 -4.23 9.05 71.98 0.65 -3.58 16 27 C 0.04 0.99 11.95 67.32 0.80 1.80 16 28 O -0.19 -4.08 10.73 0.37 0.00 -4.08 16 29 H 0.10 0.97 8.14 -2.39 -0.02 0.95 16 30 H 0.07 0.47 8.14 -2.39 -0.02 0.45 16 31 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 32 H 0.12 1.14 8.14 -2.39 -0.02 1.12 16 33 H 0.10 1.67 8.14 -2.38 -0.02 1.65 16 34 H 0.41 15.65 6.46 -92.71 -0.60 15.05 16 35 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 36 H 0.07 2.66 8.14 -2.39 -0.02 2.64 16 37 H 0.05 2.17 7.93 -2.39 -0.02 2.15 16 38 H 0.01 0.30 7.74 -2.39 -0.02 0.28 16 39 H 0.25 14.15 8.31 -92.71 -0.77 13.38 16 40 H 0.06 3.14 6.03 -2.39 -0.01 3.12 16 41 H 0.00 -0.07 6.64 -2.38 -0.02 -0.09 16 42 H 0.05 1.52 7.54 -2.39 -0.02 1.51 16 43 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 44 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 45 H 0.27 3.74 8.06 -2.91 -0.02 3.71 16 Total: -1.00 -70.82 370.27 1.30 -69.52 By element: Atomic # 1 Polarization: 24.50 SS G_CDS: 0.41 Total: 24.91 kcal Atomic # 6 Polarization: 16.78 SS G_CDS: 7.21 Total: 24.00 kcal Atomic # 7 Polarization: -124.05 SS G_CDS: -6.69 Total: -130.74 kcal Atomic # 8 Polarization: -32.82 SS G_CDS: -1.66 Total: -34.48 kcal Atomic # 14 Polarization: 44.77 SS G_CDS: 2.03 Total: 46.80 kcal Total: -70.82 1.30 -69.52 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000943796689.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.400 kcal (2) G-P(sol) polarization free energy of solvation -70.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.421 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.520 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.121 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds