Wall clock time and date at job start Tue Mar 31 2020 14:06:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42892 * 114.00101 * 2 1 4 4 C 1.50699 * 109.47341 * 179.97438 * 3 2 1 5 5 N 1.30012 * 127.33317 * 90.01793 * 4 3 2 6 6 O 1.20659 * 112.29780 * 179.97438 * 5 4 3 7 7 C 1.33494 * 113.16232 * 359.97438 * 6 5 4 8 8 C 1.37359 * 106.33717 * 359.74493 * 7 6 5 9 9 C 1.47395 * 128.56554 * 180.23016 * 8 7 6 10 10 O 1.21610 * 120.00241 * 180.15878 * 9 8 7 11 11 N 1.34776 * 119.99993 * 0.16811 * 9 8 7 12 12 C 1.46501 * 119.99963 * 180.02562 * 11 9 8 13 13 H 1.08999 * 109.46227 * 34.99067 * 12 11 9 14 14 C 1.53041 * 109.45920 * 275.02233 * 12 11 9 15 15 C 1.53171 * 109.32600 * 301.36085 * 14 12 11 16 16 N 1.46929 * 108.76590 * 305.35174 * 15 14 12 17 17 C 1.36931 * 120.62850 * 233.58816 * 16 15 14 18 18 H 1.08004 * 119.99921 * 152.31409 * 17 16 15 19 19 C 1.38810 * 120.00082 * 332.30615 * 17 16 15 20 20 N 1.31618 * 120.00614 * 342.60422 * 19 17 16 21 21 Si 1.86806 * 119.99779 * 162.59998 * 19 17 16 22 22 H 1.48502 * 109.46713 * 94.35373 * 21 19 17 23 23 H 1.48494 * 109.47210 * 214.35036 * 21 19 17 24 24 H 1.48498 * 109.47116 * 334.35279 * 21 19 17 25 25 C 1.46919 * 118.73764 * 53.61421 * 16 15 14 26 26 C 1.53042 * 109.45947 * 154.96993 * 12 11 9 27 27 H 1.09001 * 109.49711 * 178.63715 * 26 12 11 28 28 C 1.52995 * 109.49705 * 298.69707 * 26 12 11 29 29 H 1.08994 * 109.47156 * 300.00547 * 1 2 3 30 30 H 1.09000 * 109.46627 * 60.00052 * 1 2 3 31 31 H 1.09001 * 109.47188 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.47154 * 299.99476 * 3 2 1 33 33 H 1.09001 * 109.47388 * 59.99770 * 3 2 1 34 34 H 1.07994 * 126.83042 * 179.97438 * 7 6 5 35 35 H 0.96997 * 119.99980 * 359.97438 * 11 9 8 36 36 H 1.09005 * 109.49637 * 61.29492 * 14 12 11 37 37 H 1.08995 * 109.50266 * 181.39551 * 14 12 11 38 38 H 1.08996 * 109.58489 * 185.56839 * 15 14 12 39 39 H 1.08998 * 109.70874 * 65.21046 * 15 14 12 40 40 H 0.96997 * 120.00597 * 179.97438 * 20 19 17 41 41 H 1.09000 * 109.59018 * 186.60424 * 25 16 15 42 42 H 1.09002 * 109.70672 * 66.24225 * 25 16 15 43 43 H 1.09005 * 109.46824 * 60.00271 * 28 26 12 44 44 H 1.09000 * 109.47220 * 180.02562 * 28 26 12 45 45 H 1.08995 * 109.47659 * 300.00537 * 28 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5125 1.1864 0.0006 5 7 4.2990 1.1243 -1.0328 6 8 5.4605 1.0328 -0.7193 7 6 5.6482 1.0187 0.6023 8 6 4.4020 1.1232 1.1706 9 6 4.0441 1.1594 2.6000 10 8 2.8782 1.2534 2.9327 11 7 5.0090 1.0886 3.5383 12 6 4.6531 1.1239 4.9590 13 1 3.7047 0.6080 5.1088 14 6 4.5197 2.5787 5.4151 15 6 5.8433 3.3099 5.1712 16 7 6.9232 2.5664 5.8345 17 6 7.7645 3.1942 6.7138 18 1 8.2337 2.6317 7.5074 19 6 8.0143 4.5536 6.5851 20 7 7.7383 5.1694 5.4551 21 14 8.7421 5.5090 8.0158 22 1 10.2187 5.5705 7.8698 23 1 8.1878 6.8866 8.0242 24 1 8.3986 4.8294 9.2907 25 6 7.0835 1.1368 5.5360 26 6 5.7457 0.4300 5.7757 27 1 5.4934 0.4772 6.8350 28 6 5.8560 -1.0330 5.3418 29 1 -0.3633 0.5139 0.8899 30 1 -0.3632 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.6887 1.8463 -0.8900 33 1 1.6886 1.8464 0.8900 34 1 6.5922 0.9440 1.1214 35 1 5.9389 1.0134 3.2730 36 1 3.7256 3.0660 4.8492 37 1 4.2793 2.6063 6.4778 38 1 5.7859 4.3170 5.5840 39 1 6.0413 3.3645 4.1007 40 1 7.9125 6.1194 5.3653 41 1 7.8444 0.7101 6.1895 42 1 7.3825 1.0099 4.4955 43 1 6.1094 -1.0797 4.2827 44 1 6.6339 -1.5269 5.9240 45 1 4.9031 -1.5347 5.5098 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000944136468.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:06:27 Heat of formation + Delta-G solvation = 3.318741 kcal Electronic energy + Delta-G solvation = -28484.875487 eV Core-core repulsion = 24506.791805 eV Total energy + Delta-G solvation = -3978.083682 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -45.04599 -39.88001 -38.10291 -37.58578 -34.34966 -34.07052 -32.89871 -31.93813 -31.12584 -29.98776 -28.44849 -26.12746 -25.86750 -25.47167 -24.41758 -22.14598 -21.44787 -21.15617 -20.66885 -18.67812 -18.33847 -17.89113 -16.98505 -16.68879 -16.41940 -15.92841 -15.52655 -15.19688 -14.91857 -14.73550 -14.27736 -14.10566 -13.76786 -13.60954 -13.30363 -12.99524 -12.74712 -12.57576 -12.51084 -12.17285 -11.72370 -11.57962 -11.54828 -11.41354 -11.13588 -10.88376 -10.73032 -10.41661 -10.29856 -10.28095 -10.11981 -10.01696 -9.83269 -9.80802 -9.73971 -9.48705 -8.69655 -8.51589 -6.74964 -5.85571 -3.28259 1.01814 1.53019 2.82364 3.28762 3.32132 3.33310 3.41421 3.43276 3.62163 4.01495 4.30642 4.43722 4.75227 4.91601 5.04024 5.10861 5.16303 5.22309 5.25105 5.26972 5.30989 5.43506 5.48536 5.49554 5.54664 5.68612 5.84891 5.91936 6.02103 6.09471 6.21352 6.27514 6.39061 6.55961 6.59934 6.68796 6.82015 6.88657 6.90471 7.29925 7.60346 7.69277 7.73843 8.03269 8.35622 8.37487 9.13955 9.77281 10.32702 11.22458 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.017205 B = 0.003339 C = 0.003197 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1627.011992 B = 8383.981798 C = 8756.159255 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.383 6.383 3 C 0.143 3.857 4 C 0.063 3.937 5 N -0.342 5.342 6 O 0.104 5.896 7 C -0.006 4.006 8 C -0.232 4.232 9 C 0.594 3.406 10 O -0.534 6.534 11 N -0.702 5.702 12 C 0.162 3.838 13 H 0.076 0.924 14 C -0.155 4.155 15 C 0.174 3.826 16 N -0.591 5.591 17 C -0.255 4.255 18 H 0.065 0.935 19 C 0.004 3.996 20 N -0.901 5.901 21 Si 0.901 3.099 22 H -0.288 1.288 23 H -0.290 1.290 24 H -0.279 1.279 25 C 0.152 3.848 26 C -0.120 4.120 27 H 0.083 0.917 28 C -0.142 4.142 29 H 0.047 0.953 30 H 0.041 0.959 31 H 0.087 0.913 32 H 0.067 0.933 33 H 0.090 0.910 34 H 0.229 0.771 35 H 0.399 0.601 36 H 0.055 0.945 37 H 0.065 0.935 38 H 0.086 0.914 39 H 0.018 0.982 40 H 0.254 0.746 41 H 0.057 0.943 42 H 0.012 0.988 43 H 0.050 0.950 44 H 0.054 0.946 45 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.084 -10.173 -8.749 15.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.301 6.301 3 C 0.066 3.934 4 C -0.100 4.100 5 N -0.047 5.047 6 O 0.041 5.959 7 C -0.088 4.088 8 C -0.240 4.240 9 C 0.379 3.621 10 O -0.412 6.412 11 N -0.353 5.353 12 C 0.058 3.942 13 H 0.094 0.906 14 C -0.195 4.195 15 C 0.048 3.952 16 N -0.313 5.313 17 C -0.384 4.384 18 H 0.083 0.917 19 C -0.194 4.194 20 N -0.545 5.545 21 Si 0.731 3.269 22 H -0.215 1.215 23 H -0.216 1.216 24 H -0.204 1.204 25 C 0.025 3.975 26 C -0.140 4.140 27 H 0.102 0.898 28 C -0.200 4.200 29 H 0.066 0.934 30 H 0.060 0.940 31 H 0.106 0.894 32 H 0.085 0.915 33 H 0.108 0.892 34 H 0.245 0.755 35 H 0.235 0.765 36 H 0.074 0.926 37 H 0.084 0.916 38 H 0.104 0.896 39 H 0.036 0.964 40 H 0.064 0.936 41 H 0.076 0.924 42 H 0.029 0.971 43 H 0.069 0.931 44 H 0.073 0.927 45 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -8.970 -10.068 -9.832 16.688 hybrid contribution 0.713 0.836 1.399 1.779 sum -8.257 -9.231 -8.433 14.984 Atomic orbital electron populations 1.22755 0.80204 1.02969 1.00277 1.87899 1.20193 1.26460 1.95529 1.20558 0.84244 0.86018 1.02571 1.24312 0.97327 1.01488 0.86852 1.73650 0.89567 1.17894 1.23613 1.84575 1.21561 1.66400 1.23338 1.26482 1.00509 0.98119 0.83682 1.22430 0.92606 1.12986 0.95954 1.16748 0.85660 0.76860 0.82837 1.90757 1.18471 1.50133 1.81829 1.45936 1.09410 1.73254 1.06676 1.20947 0.97766 0.97318 0.78120 0.90618 1.22572 1.01029 0.95099 1.00774 1.20721 0.83185 0.96178 0.95111 1.44069 1.32630 1.03778 1.50858 1.19154 1.22148 0.92044 1.05099 0.91680 1.25020 0.99644 0.98302 0.96480 1.70024 1.51653 1.09853 1.22941 0.86313 0.78701 0.79502 0.82428 1.21473 1.21570 1.20416 1.20899 0.93167 0.86293 0.97101 1.21967 0.97946 0.94039 1.00080 0.89827 1.21769 1.01208 0.96065 1.00955 0.93400 0.94025 0.89415 0.91499 0.89184 0.75480 0.76524 0.92640 0.91624 0.89565 0.96418 0.93625 0.92411 0.97067 0.93136 0.92663 0.93201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 11.01 101.05 1.11 1.44 16 2 O -0.38 -5.26 10.69 -35.23 -0.38 -5.63 16 3 C 0.14 1.88 6.20 36.01 0.22 2.11 16 4 C 0.06 0.91 7.21 -79.77 -0.58 0.33 16 5 N -0.34 -4.82 12.01 34.78 0.42 -4.40 16 6 O 0.10 1.27 11.06 18.65 0.21 1.48 16 7 C -0.01 -0.07 11.85 30.41 0.36 0.29 16 8 C -0.23 -3.25 6.47 -102.89 -0.67 -3.91 16 9 C 0.59 9.41 7.78 -12.53 -0.10 9.31 16 10 O -0.53 -9.88 15.35 5.27 0.08 -9.80 16 11 N -0.70 -10.40 3.60 -54.85 -0.20 -10.60 16 12 C 0.16 2.62 2.21 -67.89 -0.15 2.47 16 13 H 0.08 1.25 7.58 -51.93 -0.39 0.85 16 14 C -0.15 -2.91 5.77 -26.62 -0.15 -3.06 16 15 C 0.17 3.89 5.05 -3.72 -0.02 3.88 16 16 N -0.59 -13.54 2.99 -172.34 -0.52 -14.06 16 17 C -0.25 -6.60 9.58 -15.06 -0.14 -6.75 16 18 H 0.07 1.66 7.89 -52.48 -0.41 1.25 16 19 C 0.00 0.12 4.91 -17.43 -0.09 0.03 16 20 N -0.90 -25.08 11.19 55.49 0.62 -24.46 16 21 Si 0.90 21.00 29.59 -169.99 -5.03 15.97 16 22 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 23 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 24 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 25 C 0.15 2.77 5.50 -3.71 -0.02 2.75 16 26 C -0.12 -1.83 2.67 -90.50 -0.24 -2.07 16 27 H 0.08 1.34 8.14 -51.93 -0.42 0.92 16 28 C -0.14 -1.75 9.05 37.16 0.34 -1.42 16 29 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.04 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.09 1.22 7.09 -51.93 -0.37 0.85 16 34 H 0.23 1.56 7.68 -52.49 -0.40 1.16 16 35 H 0.40 5.35 5.91 -40.82 -0.24 5.11 16 36 H 0.05 1.06 8.14 -51.93 -0.42 0.63 16 37 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 38 H 0.09 2.24 6.04 -51.93 -0.31 1.93 16 39 H 0.02 0.41 7.74 -51.93 -0.40 0.01 16 40 H 0.25 6.90 8.31 -40.82 -0.34 6.56 16 41 H 0.06 1.06 7.93 -51.93 -0.41 0.64 16 42 H 0.01 0.20 6.65 -51.93 -0.35 -0.15 16 43 H 0.05 0.59 7.54 -51.93 -0.39 0.19 16 44 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 45 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 LS Contribution 366.70 15.07 5.53 5.53 Total: -1.00 -31.64 366.70 -6.01 -37.65 By element: Atomic # 1 Polarization: 9.55 SS G_CDS: -6.62 Total: 2.92 kcal Atomic # 6 Polarization: 5.53 SS G_CDS: -0.12 Total: 5.41 kcal Atomic # 7 Polarization: -53.85 SS G_CDS: 0.33 Total: -53.52 kcal Atomic # 8 Polarization: -13.86 SS G_CDS: -0.09 Total: -13.95 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.03 Total: 15.97 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -31.64 -6.01 -37.65 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000944136468.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.973 kcal (2) G-P(sol) polarization free energy of solvation -31.643 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.330 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.654 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds