Wall clock time and date at job start Tue Mar 31 2020 14:06:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42892 * 114.00101 * 2 1 4 4 C 1.50699 * 109.47341 * 179.97438 * 3 2 1 5 5 N 1.30012 * 127.33317 * 90.01793 * 4 3 2 6 6 O 1.20659 * 112.29780 * 179.97438 * 5 4 3 7 7 C 1.33494 * 113.16232 * 359.97438 * 6 5 4 8 8 C 1.37359 * 106.33717 * 359.74493 * 7 6 5 9 9 C 1.47395 * 128.56554 * 180.23016 * 8 7 6 10 10 O 1.21610 * 120.00241 * 180.15878 * 9 8 7 11 11 N 1.34776 * 119.99993 * 0.16811 * 9 8 7 12 12 C 1.46501 * 119.99963 * 180.02562 * 11 9 8 13 13 H 1.08999 * 109.46227 * 34.99067 * 12 11 9 14 14 C 1.53041 * 109.45920 * 275.02233 * 12 11 9 15 15 C 1.53171 * 109.32600 * 301.36085 * 14 12 11 16 16 N 1.46929 * 108.76590 * 305.35174 * 15 14 12 17 17 C 1.36931 * 120.62850 * 233.58816 * 16 15 14 18 18 H 1.08004 * 119.99921 * 152.31409 * 17 16 15 19 19 C 1.38810 * 120.00082 * 332.30615 * 17 16 15 20 20 N 1.31618 * 120.00614 * 342.60422 * 19 17 16 21 21 Si 1.86806 * 119.99779 * 162.59998 * 19 17 16 22 22 H 1.48502 * 109.46713 * 94.35373 * 21 19 17 23 23 H 1.48494 * 109.47210 * 214.35036 * 21 19 17 24 24 H 1.48498 * 109.47116 * 334.35279 * 21 19 17 25 25 C 1.46919 * 118.73764 * 53.61421 * 16 15 14 26 26 C 1.53042 * 109.45947 * 154.96993 * 12 11 9 27 27 H 1.09001 * 109.49711 * 178.63715 * 26 12 11 28 28 C 1.52995 * 109.49705 * 298.69707 * 26 12 11 29 29 H 1.08994 * 109.47156 * 300.00547 * 1 2 3 30 30 H 1.09000 * 109.46627 * 60.00052 * 1 2 3 31 31 H 1.09001 * 109.47188 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.47154 * 299.99476 * 3 2 1 33 33 H 1.09001 * 109.47388 * 59.99770 * 3 2 1 34 34 H 1.07994 * 126.83042 * 179.97438 * 7 6 5 35 35 H 0.96997 * 119.99980 * 359.97438 * 11 9 8 36 36 H 1.09005 * 109.49637 * 61.29492 * 14 12 11 37 37 H 1.08995 * 109.50266 * 181.39551 * 14 12 11 38 38 H 1.08996 * 109.58489 * 185.56839 * 15 14 12 39 39 H 1.08998 * 109.70874 * 65.21046 * 15 14 12 40 40 H 0.96997 * 120.00597 * 179.97438 * 20 19 17 41 41 H 1.09000 * 109.59018 * 186.60424 * 25 16 15 42 42 H 1.09002 * 109.70672 * 66.24225 * 25 16 15 43 43 H 1.09005 * 109.46824 * 60.00271 * 28 26 12 44 44 H 1.09000 * 109.47220 * 180.02562 * 28 26 12 45 45 H 1.08995 * 109.47659 * 300.00537 * 28 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5125 1.1864 0.0006 5 7 4.2990 1.1243 -1.0328 6 8 5.4605 1.0328 -0.7193 7 6 5.6482 1.0187 0.6023 8 6 4.4020 1.1232 1.1706 9 6 4.0441 1.1594 2.6000 10 8 2.8782 1.2534 2.9327 11 7 5.0090 1.0886 3.5383 12 6 4.6531 1.1239 4.9590 13 1 3.7047 0.6080 5.1088 14 6 4.5197 2.5787 5.4151 15 6 5.8433 3.3099 5.1712 16 7 6.9232 2.5664 5.8345 17 6 7.7645 3.1942 6.7138 18 1 8.2337 2.6317 7.5074 19 6 8.0143 4.5536 6.5851 20 7 7.7383 5.1694 5.4551 21 14 8.7421 5.5090 8.0158 22 1 10.2187 5.5705 7.8698 23 1 8.1878 6.8866 8.0242 24 1 8.3986 4.8294 9.2907 25 6 7.0835 1.1368 5.5360 26 6 5.7457 0.4300 5.7757 27 1 5.4934 0.4772 6.8350 28 6 5.8560 -1.0330 5.3418 29 1 -0.3633 0.5139 0.8899 30 1 -0.3632 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.6887 1.8463 -0.8900 33 1 1.6886 1.8464 0.8900 34 1 6.5922 0.9440 1.1214 35 1 5.9389 1.0134 3.2730 36 1 3.7256 3.0660 4.8492 37 1 4.2793 2.6063 6.4778 38 1 5.7859 4.3170 5.5840 39 1 6.0413 3.3645 4.1007 40 1 7.9125 6.1194 5.3653 41 1 7.8444 0.7101 6.1895 42 1 7.3825 1.0099 4.4955 43 1 6.1094 -1.0797 4.2827 44 1 6.6339 -1.5269 5.9240 45 1 4.9031 -1.5347 5.5098 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000944136468.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:06:26 Heat of formation + Delta-G solvation = -17.531634 kcal Electronic energy + Delta-G solvation = -28485.779627 eV Core-core repulsion = 24506.791805 eV Total energy + Delta-G solvation = -3978.987822 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -46.07065 -41.19883 -39.22009 -38.83984 -35.99142 -35.10775 -34.19817 -33.11158 -32.81613 -31.53527 -29.38102 -27.36852 -27.25924 -26.72415 -25.65146 -23.72042 -22.76472 -22.40195 -21.84244 -20.09473 -19.46346 -18.91037 -18.60385 -17.95985 -17.34461 -16.96340 -16.80893 -16.62355 -16.29689 -16.06913 -15.66212 -15.44679 -15.33034 -14.85530 -14.54396 -14.50425 -14.22045 -13.60517 -13.50784 -13.38456 -13.13646 -12.93445 -12.68406 -12.57381 -12.54834 -12.50192 -12.33893 -12.18365 -11.93933 -11.63649 -11.46067 -11.31238 -11.22508 -11.06928 -10.85298 -10.75140 -10.49794 -10.01426 -8.63079 -7.84557 -5.28044 0.03703 0.48957 1.47292 1.50907 1.58869 1.83663 2.12757 2.22289 2.53419 2.64488 3.02850 3.31206 3.36682 3.68948 3.74473 3.78989 3.95334 4.09916 4.12054 4.16374 4.25236 4.44195 4.47120 4.51345 4.57829 4.63020 4.66789 4.70187 4.79796 4.80512 4.85994 5.01901 5.05382 5.12876 5.21982 5.35113 5.46287 5.52680 5.58951 5.68414 5.77991 6.01370 6.41759 6.49797 7.05369 7.15260 7.18240 7.90357 8.40307 9.20889 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.017205 B = 0.003339 C = 0.003197 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1627.011992 B = 8383.981798 C = 8756.159255 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.408 6.408 3 C 0.144 3.856 4 C 0.047 3.953 5 N -0.356 5.356 6 O 0.110 5.890 7 C 0.029 3.971 8 C -0.264 4.264 9 C 0.596 3.404 10 O -0.566 6.566 11 N -0.694 5.694 12 C 0.170 3.830 13 H 0.079 0.921 14 C -0.144 4.144 15 C 0.187 3.813 16 N -0.607 5.607 17 C -0.257 4.257 18 H 0.068 0.932 19 C -0.048 4.048 20 N -0.930 5.930 21 Si 0.958 3.042 22 H -0.286 1.286 23 H -0.298 1.298 24 H -0.271 1.271 25 C 0.149 3.851 26 C -0.106 4.106 27 H 0.077 0.923 28 C -0.134 4.134 29 H 0.047 0.953 30 H 0.060 0.940 31 H 0.102 0.898 32 H 0.084 0.916 33 H 0.079 0.921 34 H 0.270 0.730 35 H 0.408 0.592 36 H 0.047 0.953 37 H 0.061 0.939 38 H 0.045 0.955 39 H 0.005 0.995 40 H 0.247 0.753 41 H 0.059 0.941 42 H 0.029 0.971 43 H 0.061 0.939 44 H 0.068 0.932 45 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.448 -12.011 -8.930 16.718 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.326 6.326 3 C 0.066 3.934 4 C -0.115 4.115 5 N -0.062 5.062 6 O 0.048 5.952 7 C -0.053 4.053 8 C -0.272 4.272 9 C 0.383 3.617 10 O -0.446 6.446 11 N -0.345 5.345 12 C 0.066 3.934 13 H 0.097 0.903 14 C -0.184 4.184 15 C 0.061 3.939 16 N -0.330 5.330 17 C -0.388 4.388 18 H 0.085 0.915 19 C -0.243 4.243 20 N -0.577 5.577 21 Si 0.787 3.213 22 H -0.213 1.213 23 H -0.225 1.225 24 H -0.196 1.196 25 C 0.024 3.976 26 C -0.127 4.127 27 H 0.095 0.905 28 C -0.192 4.192 29 H 0.065 0.935 30 H 0.078 0.922 31 H 0.121 0.879 32 H 0.102 0.898 33 H 0.097 0.903 34 H 0.286 0.714 35 H 0.245 0.755 36 H 0.066 0.934 37 H 0.080 0.920 38 H 0.063 0.937 39 H 0.024 0.976 40 H 0.056 0.944 41 H 0.077 0.923 42 H 0.047 0.953 43 H 0.080 0.920 44 H 0.087 0.913 45 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -8.325 -11.948 -10.018 17.676 hybrid contribution 0.516 1.369 1.439 2.052 sum -7.809 -10.579 -8.580 15.700 Atomic orbital electron populations 1.22974 0.78357 1.04280 1.01157 1.87852 1.22317 1.26776 1.95686 1.20562 0.83966 0.86049 1.02774 1.24613 0.98089 1.01634 0.87194 1.73645 0.90081 1.18623 1.23809 1.84563 1.20877 1.65848 1.23949 1.27171 1.00878 0.94396 0.82861 1.22300 0.93988 1.15956 0.94947 1.16947 0.85217 0.75938 0.83606 1.90739 1.19802 1.51638 1.82461 1.45790 1.09746 1.72985 1.05977 1.20790 0.98462 0.95197 0.78989 0.90343 1.22399 0.98618 0.96794 1.00560 1.20407 0.84888 0.94745 0.93847 1.44256 1.32385 1.05621 1.50714 1.19467 1.21430 0.92391 1.05477 0.91470 1.25670 1.00972 0.99314 0.98367 1.70157 1.53480 1.09483 1.24541 0.85402 0.77834 0.77790 0.80249 1.21316 1.22465 1.19629 1.21098 0.94895 0.83601 0.98048 1.21809 0.95548 0.95702 0.99635 0.90464 1.21706 1.02251 0.93460 1.01802 0.93465 0.92183 0.87937 0.89844 0.90343 0.71400 0.75511 0.93378 0.92004 0.93671 0.97646 0.94370 0.92284 0.95282 0.92036 0.91298 0.92395 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.51 11.01 113.37 1.25 1.76 16 2 O -0.41 -11.03 10.69 -148.98 -1.59 -12.62 16 3 C 0.14 3.76 6.20 71.24 0.44 4.20 16 4 C 0.05 1.33 7.21 45.16 0.33 1.66 16 5 N -0.36 -9.61 12.01 -44.79 -0.54 -10.14 16 6 O 0.11 2.46 11.06 76.98 0.85 3.31 16 7 C 0.03 0.54 11.85 67.61 0.80 1.35 16 8 C -0.26 -7.03 6.47 -18.74 -0.12 -7.15 16 9 C 0.60 18.31 7.78 86.65 0.67 18.98 16 10 O -0.57 -20.91 15.35 -4.06 -0.06 -20.98 16 11 N -0.69 -19.33 3.60 -445.70 -1.60 -20.93 16 12 C 0.17 5.24 2.21 45.02 0.10 5.34 16 13 H 0.08 2.46 7.58 -2.39 -0.02 2.44 16 14 C -0.14 -5.40 5.77 30.67 0.18 -5.23 16 15 C 0.19 8.48 5.05 86.35 0.44 8.92 16 16 N -0.61 -27.46 2.99 -699.15 -2.09 -29.56 16 17 C -0.26 -13.24 9.58 84.03 0.81 -12.43 16 18 H 0.07 3.37 7.89 -2.91 -0.02 3.34 16 19 C -0.05 -2.55 4.91 84.86 0.42 -2.13 16 20 N -0.93 -52.83 11.19 21.65 0.24 -52.59 16 21 Si 0.96 43.50 29.59 68.60 2.03 45.53 16 22 H -0.29 -12.82 7.11 99.48 0.71 -12.11 16 23 H -0.30 -13.80 7.11 99.48 0.71 -13.10 16 24 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 25 C 0.15 5.10 5.50 86.36 0.48 5.57 16 26 C -0.11 -3.00 2.67 -10.72 -0.03 -3.03 16 27 H 0.08 2.31 8.14 -2.39 -0.02 2.30 16 28 C -0.13 -2.83 9.05 71.98 0.65 -2.18 16 29 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 30 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 31 H 0.10 1.52 8.14 -2.39 -0.02 1.50 16 32 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 33 H 0.08 2.19 7.09 -2.39 -0.02 2.17 16 34 H 0.27 2.52 7.68 -2.91 -0.02 2.50 16 35 H 0.41 9.80 5.91 -92.71 -0.55 9.25 16 36 H 0.05 1.86 8.14 -2.38 -0.02 1.84 16 37 H 0.06 2.35 8.14 -2.39 -0.02 2.33 16 38 H 0.04 2.42 6.04 -2.39 -0.01 2.41 16 39 H 0.01 0.26 7.74 -2.39 -0.02 0.24 16 40 H 0.25 13.79 8.31 -92.71 -0.77 13.02 16 41 H 0.06 2.01 7.93 -2.39 -0.02 1.99 16 42 H 0.03 0.91 6.65 -2.39 -0.02 0.90 16 43 H 0.06 1.17 7.54 -2.38 -0.02 1.16 16 44 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 45 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 Total: -1.00 -69.52 366.70 4.10 -65.42 By element: Atomic # 1 Polarization: 16.48 SS G_CDS: 0.46 Total: 16.94 kcal Atomic # 6 Polarization: 9.22 SS G_CDS: 6.40 Total: 15.62 kcal Atomic # 7 Polarization: -109.23 SS G_CDS: -3.99 Total: -113.22 kcal Atomic # 8 Polarization: -29.49 SS G_CDS: -0.80 Total: -30.29 kcal Atomic # 14 Polarization: 43.50 SS G_CDS: 2.03 Total: 45.53 kcal Total: -69.52 4.10 -65.42 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000944136468.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.890 kcal (2) G-P(sol) polarization free energy of solvation -69.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.422 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.532 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds