Wall clock time and date at job start Tue Mar 31 2020 14:06:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.42896 * 113.99590 * 2 1 4 4 C 1.50701 * 109.46900 * 179.97438 * 3 2 1 5 5 N 1.30015 * 127.34008 * 270.15348 * 4 3 2 6 6 O 1.20660 * 112.29983 * 180.26973 * 5 4 3 7 7 C 1.33493 * 113.15949 * 359.73581 * 6 5 4 8 8 C 1.37358 * 106.33789 * 359.97438 * 7 6 5 9 9 C 1.47397 * 128.56088 * 179.97438 * 8 7 6 10 10 O 1.21606 * 120.00169 * 180.02562 * 9 8 7 11 11 N 1.34776 * 120.00049 * 0.02834 * 9 8 7 12 12 C 1.46505 * 120.00226 * 179.97438 * 11 9 8 13 13 H 1.09000 * 109.45547 * 35.03141 * 12 11 9 14 14 C 1.53039 * 109.45916 * 275.06992 * 12 11 9 15 15 C 1.53198 * 109.30889 * 178.61085 * 14 12 11 16 16 N 1.46922 * 108.77630 * 54.64067 * 15 14 12 17 17 C 1.36933 * 120.63679 * 126.38986 * 16 15 14 18 18 H 1.07997 * 119.99940 * 207.68235 * 17 16 15 19 19 C 1.38810 * 119.99740 * 27.67562 * 17 16 15 20 20 N 1.31619 * 120.00141 * 17.36110 * 19 17 16 21 21 Si 1.86803 * 119.99852 * 197.36555 * 19 17 16 22 22 H 1.48494 * 109.47229 * 89.99985 * 21 19 17 23 23 H 1.48502 * 109.46945 * 210.00015 * 21 19 17 24 24 H 1.48501 * 109.47010 * 329.99726 * 21 19 17 25 25 C 1.46939 * 118.76186 * 306.40886 * 16 15 14 26 26 C 1.53039 * 109.46101 * 155.00043 * 12 11 9 27 27 H 1.09003 * 109.49895 * 61.40257 * 26 12 11 28 28 C 1.53005 * 109.49755 * 301.33818 * 26 12 11 29 29 H 1.08997 * 109.47147 * 60.00114 * 1 2 3 30 30 H 1.09006 * 109.46750 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.46928 * 299.99317 * 1 2 3 32 32 H 1.09002 * 109.47087 * 60.00439 * 3 2 1 33 33 H 1.08994 * 109.47504 * 300.00114 * 3 2 1 34 34 H 1.07999 * 126.82463 * 180.02562 * 7 6 5 35 35 H 0.97002 * 120.00414 * 359.97438 * 11 9 8 36 36 H 1.08994 * 109.49990 * 298.56333 * 14 12 11 37 37 H 1.08997 * 109.49770 * 58.63354 * 14 12 11 38 38 H 1.09004 * 109.58087 * 174.42438 * 15 14 12 39 39 H 1.08994 * 109.58630 * 294.84516 * 15 14 12 40 40 H 0.97001 * 119.99897 * 179.97438 * 20 19 17 41 41 H 1.09005 * 109.55781 * 293.78730 * 25 16 15 42 42 H 1.09003 * 109.61715 * 173.36192 * 25 16 15 43 43 H 1.09002 * 109.47147 * 60.06749 * 28 26 12 44 44 H 1.08994 * 109.47143 * 300.06546 * 28 26 12 45 45 H 1.08996 * 109.46889 * 180.02562 * 28 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1865 0.0006 5 7 4.2980 1.1217 1.0347 6 8 5.4602 1.0357 0.7221 7 6 5.6489 1.0230 -0.5994 8 6 4.4023 1.1154 -1.1686 9 6 4.0448 1.1436 -2.5983 10 8 2.8786 1.2302 -2.9320 11 7 5.0105 1.0731 -3.5359 12 6 4.6552 1.1005 -4.9570 13 1 3.7964 1.7555 -5.1039 14 6 4.3025 -0.3143 -5.4217 15 6 3.8981 -0.2763 -6.8988 16 7 4.9761 0.3602 -7.6680 17 6 5.5243 -0.2691 -8.7535 18 1 6.5452 -0.0627 -9.0387 19 6 4.7677 -1.1726 -9.4872 20 7 3.4566 -1.1795 -9.3719 21 14 5.6105 -2.3786 -10.6382 22 1 5.9304 -3.6265 -9.8997 23 1 4.7066 -2.6932 -11.7737 24 1 6.8643 -1.7747 -11.1563 25 6 5.4554 1.6850 -7.2504 26 6 5.8415 1.6252 -5.7691 27 1 6.6934 0.9572 -5.6419 28 6 6.2142 3.0267 -5.2815 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5137 0.8901 32 1 1.6886 1.8463 0.8900 33 1 1.6886 1.8464 -0.8899 34 1 6.5938 0.9530 -1.1177 35 1 5.9407 1.0043 -3.2699 36 1 5.1686 -0.9643 -5.2982 37 1 3.4730 -0.6965 -4.8267 38 1 3.7417 -1.2924 -7.2610 39 1 2.9796 0.2995 -7.0115 40 1 2.9279 -1.8106 -9.8849 41 1 4.6639 2.4209 -7.3923 42 1 6.3263 1.9629 -7.8441 43 1 6.4877 2.9839 -4.2273 44 1 5.3621 3.6943 -5.4089 45 1 7.0588 3.4001 -5.8605 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000944136473.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:06:37 Heat of formation + Delta-G solvation = 1.687974 kcal Electronic energy + Delta-G solvation = -27986.470433 eV Core-core repulsion = 24008.316035 eV Total energy + Delta-G solvation = -3978.154398 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -45.20841 -39.82184 -38.11959 -37.60823 -34.63392 -34.20569 -32.99913 -32.08730 -31.19365 -29.82974 -28.51499 -26.15501 -25.90372 -25.51558 -24.21865 -22.16622 -21.58687 -21.03853 -20.38965 -19.53696 -18.30525 -18.04433 -17.00504 -16.61003 -16.46809 -16.09364 -15.82804 -15.36257 -14.86275 -14.66972 -14.49802 -13.93351 -13.77837 -13.58561 -13.26820 -12.87281 -12.77618 -12.65346 -12.58844 -12.15763 -11.74864 -11.68907 -11.54058 -11.34629 -11.09307 -10.85318 -10.69951 -10.44419 -10.39030 -10.24402 -10.15001 -10.02568 -9.99527 -9.83792 -9.81951 -9.53214 -8.78381 -8.45161 -6.71928 -5.80618 -3.23644 0.84612 1.39685 2.65750 3.11206 3.23353 3.36964 3.43719 3.44974 3.51501 3.88688 4.19218 4.47210 4.58787 4.78096 4.96559 4.99885 5.10903 5.17564 5.24519 5.25758 5.35135 5.37552 5.44892 5.52564 5.56170 5.58067 5.84816 5.91712 6.04988 6.19791 6.21364 6.28729 6.39674 6.55866 6.63522 6.74636 6.85289 6.86730 6.91558 7.34355 7.54800 7.66028 7.77661 7.88527 8.23568 8.42376 9.18504 9.81807 10.37901 11.27836 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.016957 B = 0.003043 C = 0.002781 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1650.884393 B = 9200.628736 C =10066.969949 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.382 6.382 3 C 0.142 3.858 4 C 0.064 3.936 5 N -0.340 5.340 6 O 0.105 5.895 7 C -0.013 4.013 8 C -0.230 4.230 9 C 0.590 3.410 10 O -0.523 6.523 11 N -0.713 5.713 12 C 0.159 3.841 13 H 0.085 0.915 14 C -0.148 4.148 15 C 0.174 3.826 16 N -0.593 5.593 17 C -0.256 4.256 18 H 0.066 0.934 19 C 0.003 3.997 20 N -0.900 5.900 21 Si 0.902 3.098 22 H -0.287 1.287 23 H -0.291 1.291 24 H -0.279 1.279 25 C 0.155 3.845 26 C -0.115 4.115 27 H 0.072 0.928 28 C -0.142 4.142 29 H 0.049 0.951 30 H 0.089 0.911 31 H 0.041 0.959 32 H 0.067 0.933 33 H 0.090 0.910 34 H 0.228 0.772 35 H 0.393 0.607 36 H 0.055 0.945 37 H 0.055 0.945 38 H 0.090 0.910 39 H 0.021 0.979 40 H 0.254 0.746 41 H 0.021 0.979 42 H 0.058 0.942 43 H 0.045 0.955 44 H 0.053 0.947 45 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.757 6.662 18.757 20.095 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.300 6.300 3 C 0.065 3.935 4 C -0.099 4.099 5 N -0.046 5.046 6 O 0.041 5.959 7 C -0.095 4.095 8 C -0.238 4.238 9 C 0.375 3.625 10 O -0.399 6.399 11 N -0.363 5.363 12 C 0.056 3.944 13 H 0.103 0.897 14 C -0.188 4.188 15 C 0.047 3.953 16 N -0.315 5.315 17 C -0.385 4.385 18 H 0.084 0.916 19 C -0.195 4.195 20 N -0.544 5.544 21 Si 0.732 3.268 22 H -0.214 1.214 23 H -0.218 1.218 24 H -0.204 1.204 25 C 0.028 3.972 26 C -0.136 4.136 27 H 0.090 0.910 28 C -0.200 4.200 29 H 0.068 0.932 30 H 0.107 0.893 31 H 0.060 0.940 32 H 0.085 0.915 33 H 0.108 0.892 34 H 0.244 0.756 35 H 0.226 0.774 36 H 0.074 0.926 37 H 0.074 0.926 38 H 0.108 0.892 39 H 0.039 0.961 40 H 0.064 0.936 41 H 0.038 0.962 42 H 0.077 0.923 43 H 0.064 0.936 44 H 0.072 0.928 45 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 1.675 6.461 19.686 20.787 hybrid contribution 0.674 -0.562 -1.274 1.547 sum 2.350 5.900 18.411 19.476 Atomic orbital electron populations 1.22777 0.79982 1.03193 1.00276 1.87916 1.20382 1.26173 1.95518 1.20566 0.84127 0.86303 1.02523 1.24381 0.97494 1.01260 0.86773 1.73666 0.89520 1.17810 1.23569 1.84579 1.21579 1.66431 1.23292 1.26415 1.00371 0.98890 0.83830 1.22503 0.92605 1.12625 0.96041 1.16801 0.85843 0.77147 0.82759 1.90810 1.18260 1.49213 1.81655 1.46138 1.08860 1.74084 1.07240 1.21130 0.98142 0.98572 0.76563 0.89738 1.22592 1.00726 0.94806 1.00715 1.20766 0.89258 1.00158 0.85085 1.44112 1.41944 1.14471 1.30941 1.19177 0.94650 1.20473 1.04227 0.91588 1.25049 0.95019 1.01554 0.97920 1.70036 1.03545 1.37392 1.43461 0.86293 0.78674 0.81619 0.80181 1.21447 1.21763 1.20439 1.20890 0.97442 0.88641 0.90248 1.21989 0.97162 0.95886 0.98549 0.90979 1.21779 1.01300 0.96999 0.99935 0.93247 0.89256 0.94049 0.91509 0.89207 0.75577 0.77382 0.92591 0.92648 0.89167 0.96100 0.93551 0.96159 0.92319 0.93560 0.92831 0.92648 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 11.01 101.05 1.11 1.45 16 2 O -0.38 -5.25 10.69 -35.23 -0.38 -5.63 16 3 C 0.14 1.76 6.19 36.01 0.22 1.98 16 4 C 0.06 0.83 7.21 -79.77 -0.58 0.26 16 5 N -0.34 -4.25 12.01 34.78 0.42 -3.83 16 6 O 0.10 1.06 11.06 18.65 0.21 1.26 16 7 C -0.01 -0.11 11.85 30.41 0.36 0.25 16 8 C -0.23 -2.78 6.47 -102.89 -0.67 -3.45 16 9 C 0.59 8.55 7.78 -12.53 -0.10 8.46 16 10 O -0.52 -9.56 15.36 5.27 0.08 -9.48 16 11 N -0.71 -9.16 4.36 -54.85 -0.24 -9.40 16 12 C 0.16 2.59 1.88 -67.89 -0.13 2.46 16 13 H 0.08 1.57 7.58 -51.93 -0.39 1.17 16 14 C -0.15 -2.86 5.65 -26.61 -0.15 -3.01 16 15 C 0.17 4.12 5.31 -3.71 -0.02 4.11 16 16 N -0.59 -14.34 3.00 -172.31 -0.52 -14.86 16 17 C -0.26 -6.83 9.58 -15.06 -0.14 -6.97 16 18 H 0.07 1.72 7.89 -52.49 -0.41 1.31 16 19 C 0.00 0.10 4.91 -17.43 -0.09 0.01 16 20 N -0.90 -25.94 11.19 55.49 0.62 -25.32 16 21 Si 0.90 21.37 29.59 -169.99 -5.03 16.35 16 22 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 23 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 24 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 25 C 0.16 3.05 5.80 -3.70 -0.02 3.02 16 26 C -0.11 -1.76 2.46 -90.50 -0.22 -1.98 16 27 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 28 C -0.14 -1.72 9.03 37.16 0.34 -1.38 16 29 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 30 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.04 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.09 1.14 7.12 -51.93 -0.37 0.77 16 34 H 0.23 0.71 7.68 -52.49 -0.40 0.31 16 35 H 0.39 3.66 7.49 -40.82 -0.31 3.36 16 36 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 37 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 38 H 0.09 2.41 6.04 -51.93 -0.31 2.10 16 39 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 41 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 42 H 0.06 1.12 7.93 -51.93 -0.41 0.71 16 43 H 0.05 0.46 7.36 -51.93 -0.38 0.08 16 44 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 45 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 LS Contribution 370.66 15.07 5.59 5.59 Total: -1.00 -33.39 370.66 -6.11 -39.50 By element: Atomic # 1 Polarization: 7.42 SS G_CDS: -6.78 Total: 0.64 kcal Atomic # 6 Polarization: 5.28 SS G_CDS: -0.08 Total: 5.20 kcal Atomic # 7 Polarization: -53.70 SS G_CDS: 0.28 Total: -53.42 kcal Atomic # 8 Polarization: -13.76 SS G_CDS: -0.09 Total: -13.85 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.03 Total: 16.35 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -33.39 -6.11 -39.50 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000944136473.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.183 kcal (2) G-P(sol) polarization free energy of solvation -33.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.107 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.495 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.688 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds