Wall clock time and date at job start Tue Mar 31 2020 14:48:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42898 * 109.47016 * 2 1 4 4 C 1.35347 * 117.00257 * 179.97438 * 3 2 1 5 5 N 1.30543 * 125.45219 * 180.33158 * 4 3 2 6 6 C 1.36330 * 108.38589 * 180.13384 * 5 4 3 7 7 C 1.47369 * 126.41160 * 179.83415 * 6 5 4 8 8 O 1.21622 * 119.99826 * 179.69376 * 7 6 5 9 9 N 1.34781 * 120.00309 * 359.68218 * 7 6 5 10 10 C 1.46493 * 120.00117 * 180.02562 * 9 7 6 11 11 H 1.08998 * 109.45435 * 34.96667 * 10 9 7 12 12 C 1.53046 * 109.45720 * 274.99880 * 10 9 7 13 13 C 1.53198 * 109.31324 * 178.61379 * 12 10 9 14 14 N 1.46930 * 108.77203 * 54.63508 * 13 12 10 15 15 C 1.36935 * 120.62552 * 126.41664 * 14 13 12 16 16 H 1.08002 * 119.99539 * 209.00842 * 15 14 13 17 17 C 1.38814 * 120.00426 * 29.01091 * 15 14 13 18 18 N 1.31612 * 119.99931 * 15.02171 * 17 15 14 19 19 Si 1.86801 * 120.00047 * 195.02366 * 17 15 14 20 20 H 1.48501 * 109.47104 * 0.02562 * 19 17 15 21 21 H 1.48500 * 109.47119 * 119.99713 * 19 17 15 22 22 H 1.48497 * 109.46922 * 239.99906 * 19 17 15 23 23 C 1.46923 * 118.73936 * 306.39378 * 14 13 12 24 24 H 1.09007 * 109.58629 * 293.81850 * 23 14 13 25 25 C 1.53002 * 109.58650 * 173.39768 * 23 14 13 26 26 C 1.53036 * 109.46123 * 154.93406 * 10 9 7 27 27 C 1.35911 * 107.17096 * 359.56272 * 6 5 4 28 28 O 1.34205 * 125.44125 * 359.97438 * 4 3 2 29 29 H 1.09001 * 109.47212 * 300.00059 * 1 2 3 30 30 H 1.08994 * 109.47434 * 60.00133 * 1 2 3 31 31 H 1.08999 * 109.47064 * 180.02562 * 1 2 3 32 32 H 1.08994 * 109.46922 * 240.00162 * 2 1 3 33 33 H 1.09001 * 109.46619 * 119.99716 * 2 1 3 34 34 H 0.97002 * 119.99570 * 0.02562 * 9 7 6 35 35 H 1.08995 * 109.49769 * 58.66853 * 12 10 9 36 36 H 1.08996 * 109.49790 * 298.56606 * 12 10 9 37 37 H 1.08998 * 109.58822 * 174.42573 * 13 12 10 38 38 H 1.08999 * 109.58760 * 294.71148 * 13 12 10 39 39 H 0.97000 * 120.00190 * 179.97438 * 18 17 15 40 40 H 1.09001 * 109.47119 * 59.99766 * 25 23 14 41 41 H 1.08997 * 109.47533 * 179.97438 * 25 23 14 42 42 H 1.09002 * 109.46826 * 300.00159 * 25 23 14 43 43 H 1.08998 * 109.50128 * 61.43270 * 26 10 9 44 44 H 1.08997 * 109.52765 * 301.35207 * 26 10 9 45 45 H 1.08003 * 126.45030 * 180.25464 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3481 1.5247 0.0005 5 7 3.9594 2.6782 0.0068 6 6 5.3038 2.4524 0.0020 7 6 6.3629 3.4771 0.0029 8 8 7.5323 3.1430 0.0039 9 7 6.0357 4.7846 0.0024 10 6 7.0885 5.8032 0.0027 11 1 7.9354 5.4501 -0.5858 12 6 7.5416 6.0677 1.4404 13 6 8.6663 7.1078 1.4340 14 7 8.2005 8.3035 0.7184 15 6 8.2693 9.5388 1.3054 16 1 7.5553 10.3039 1.0386 17 6 9.2569 9.8077 2.2431 18 7 10.2929 9.0039 2.3567 19 14 9.1154 11.3102 3.3440 20 1 7.8662 12.0451 3.0203 21 1 9.0825 10.8811 4.7653 22 1 10.2845 12.1984 3.1219 23 6 7.6598 8.1487 -0.6389 24 1 8.4523 7.8231 -1.3129 25 6 7.0905 9.4849 -1.1198 26 6 6.5465 7.0969 -0.6093 27 6 5.4845 1.1053 0.0025 28 8 4.2629 0.5428 0.0016 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 5.1030 5.0510 0.0018 35 1 7.9058 5.1408 1.8834 36 1 6.7010 6.4443 2.0232 37 1 8.9247 7.3729 2.4592 38 1 9.5416 6.6964 0.9313 39 1 10.9832 9.1920 3.0117 40 1 7.8813 10.2350 -1.1281 41 1 6.6904 9.3681 -2.1269 42 1 6.2944 9.8039 -0.4469 43 1 5.7153 7.4639 -0.0071 44 1 6.2020 6.9031 -1.6250 45 1 6.4308 0.5848 0.0034 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000947498648.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:48:23 Heat of formation + Delta-G solvation = -26.932455 kcal Electronic energy + Delta-G solvation = -27313.544707 eV Core-core repulsion = 23334.149234 eV Total energy + Delta-G solvation = -3979.395472 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -43.69095 -39.68121 -39.23602 -37.58978 -35.17614 -34.53714 -32.46380 -32.33013 -31.25399 -29.87666 -29.31035 -26.37152 -25.22836 -24.34022 -23.79642 -22.66892 -21.85357 -21.01639 -20.07829 -19.58676 -18.87283 -17.87951 -17.37319 -16.63455 -16.23724 -16.00311 -15.75252 -15.30046 -15.03152 -14.60084 -14.05454 -13.87834 -13.67484 -13.49887 -13.41668 -13.29450 -13.19479 -12.76870 -12.65058 -12.29894 -11.82595 -11.55570 -11.20028 -11.15223 -11.07826 -11.01650 -10.87548 -10.86208 -10.61631 -10.25907 -10.16980 -10.02536 -9.96561 -9.68934 -9.35491 -8.97520 -8.64715 -8.37587 -6.59789 -5.72486 -3.16136 0.92304 1.58186 1.86097 2.41337 3.25314 3.34785 3.40722 3.48383 3.50062 4.25602 4.26685 4.29618 4.53173 4.58487 4.65580 4.85626 5.13581 5.16443 5.24825 5.32131 5.43416 5.45778 5.46625 5.59365 5.64259 5.84067 6.04337 6.21394 6.29894 6.34296 6.37100 6.46871 6.48391 6.57638 6.69777 6.84285 6.92104 7.07228 7.15210 7.24662 7.44214 7.73323 7.77731 7.87381 8.33042 8.51778 9.27279 9.90971 10.47883 11.36145 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.022387 B = 0.002402 C = 0.002360 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1250.452369 B =11655.011145 C =11863.988017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.051 3.949 3 O -0.245 6.245 4 C 0.381 3.619 5 N -0.455 5.455 6 C -0.041 4.041 7 C 0.598 3.402 8 O -0.534 6.534 9 N -0.702 5.702 10 C 0.150 3.850 11 H 0.084 0.916 12 C -0.147 4.147 13 C 0.175 3.825 14 N -0.588 5.588 15 C -0.248 4.248 16 H 0.071 0.929 17 C 0.000 4.000 18 N -0.903 5.903 19 Si 0.900 3.100 20 H -0.278 1.278 21 H -0.290 1.290 22 H -0.291 1.291 23 C 0.171 3.829 24 H 0.027 0.973 25 C -0.135 4.135 26 C -0.134 4.134 27 C -0.002 4.002 28 O -0.227 6.227 29 H 0.072 0.928 30 H 0.072 0.928 31 H 0.087 0.913 32 H 0.074 0.926 33 H 0.074 0.926 34 H 0.405 0.595 35 H 0.053 0.947 36 H 0.056 0.944 37 H 0.091 0.909 38 H 0.021 0.979 39 H 0.252 0.748 40 H 0.062 0.938 41 H 0.038 0.962 42 H 0.053 0.947 43 H 0.065 0.935 44 H 0.056 0.944 45 H 0.237 0.763 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.150 -19.140 -6.128 26.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.024 4.024 3 O -0.154 6.154 4 C 0.135 3.865 5 N -0.200 5.200 6 C -0.160 4.160 7 C 0.382 3.618 8 O -0.412 6.412 9 N -0.351 5.351 10 C 0.047 3.953 11 H 0.102 0.898 12 C -0.188 4.188 13 C 0.048 3.952 14 N -0.311 5.311 15 C -0.377 4.377 16 H 0.088 0.912 17 C -0.198 4.198 18 N -0.548 5.548 19 Si 0.730 3.270 20 H -0.203 1.203 21 H -0.217 1.217 22 H -0.218 1.218 23 C 0.064 3.936 24 H 0.045 0.955 25 C -0.193 4.193 26 C -0.174 4.174 27 C -0.074 4.074 28 O -0.118 6.118 29 H 0.091 0.909 30 H 0.091 0.909 31 H 0.106 0.894 32 H 0.092 0.908 33 H 0.092 0.908 34 H 0.240 0.760 35 H 0.072 0.928 36 H 0.075 0.925 37 H 0.109 0.891 38 H 0.039 0.961 39 H 0.063 0.937 40 H 0.081 0.919 41 H 0.057 0.943 42 H 0.072 0.928 43 H 0.083 0.917 44 H 0.074 0.926 45 H 0.253 0.747 Dipole moment (debyes) X Y Z Total from point charges -16.721 -18.661 -6.016 25.768 hybrid contribution -0.191 -0.124 0.686 0.723 sum -16.912 -18.785 -5.330 25.832 Atomic orbital electron populations 1.21813 0.91209 1.03649 1.04272 1.23055 0.96872 0.79392 1.03047 1.86385 1.08981 1.30779 1.89236 1.23291 0.83452 0.81630 0.98170 1.71120 1.04015 1.21497 1.23409 1.21867 0.90194 0.94214 1.09768 1.16668 0.86036 0.81990 0.77109 1.90849 1.17813 1.81394 1.51101 1.46171 1.11408 1.05022 1.72512 1.21138 0.89417 0.86338 0.98441 0.89822 1.22591 1.01403 1.00219 0.94542 1.20760 0.90825 0.84100 0.99483 1.44182 1.72865 1.03754 1.10331 1.19219 1.08714 0.90529 1.19282 0.91166 1.25098 0.95011 0.97976 1.01709 1.70022 1.09516 1.38791 1.36438 0.86254 0.77368 0.82644 0.80695 1.20301 1.21688 1.21821 1.20362 0.92391 0.92612 0.88236 0.95494 1.21793 1.01111 0.98043 0.98353 1.22387 1.00540 0.95150 0.99350 1.24983 0.85755 0.92952 1.03709 1.84381 1.16286 1.39175 1.72004 0.90914 0.90932 0.89444 0.90804 0.90789 0.76013 0.92828 0.92543 0.89115 0.96129 0.93746 0.91856 0.94281 0.92756 0.91653 0.92565 0.74721 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.54 10.28 37.16 0.38 -0.16 16 2 C 0.05 0.28 6.38 37.16 0.24 0.52 16 3 O -0.25 -2.37 10.19 -40.97 -0.42 -2.79 16 4 C 0.38 4.39 8.98 52.21 0.47 4.86 16 5 N -0.45 -6.23 11.10 -11.72 -0.13 -6.36 16 6 C -0.04 -0.57 6.99 -82.99 -0.58 -1.15 16 7 C 0.60 9.69 7.78 -12.54 -0.10 9.59 16 8 O -0.53 -10.03 16.55 5.26 0.09 -9.95 16 9 N -0.70 -11.17 5.07 -54.86 -0.28 -11.44 16 10 C 0.15 2.71 2.42 -67.89 -0.16 2.55 16 11 H 0.08 1.66 7.57 -51.93 -0.39 1.26 16 12 C -0.15 -3.01 5.65 -26.61 -0.15 -3.16 16 13 C 0.17 4.27 5.29 -3.71 -0.02 4.25 16 14 N -0.59 -14.54 2.99 -164.77 -0.49 -15.04 16 15 C -0.25 -6.65 8.60 -15.06 -0.13 -6.78 16 16 H 0.07 1.84 6.21 -52.49 -0.33 1.51 16 17 C 0.00 0.01 4.96 -17.43 -0.09 -0.08 16 18 N -0.90 -26.36 11.14 55.49 0.62 -25.74 16 19 Si 0.90 21.77 29.58 -169.99 -5.03 16.74 16 20 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 21 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 22 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 23 C 0.17 3.54 3.50 -67.60 -0.24 3.31 16 24 H 0.03 0.59 8.14 -51.93 -0.42 0.16 16 25 C -0.14 -2.53 7.94 37.16 0.30 -2.23 16 26 C -0.13 -2.34 4.84 -26.61 -0.13 -2.47 16 27 C 0.00 -0.02 11.93 29.90 0.36 0.34 16 28 O -0.23 -2.30 10.20 -17.76 -0.18 -2.48 16 29 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 30 H 0.07 0.28 8.14 -51.93 -0.42 -0.15 16 31 H 0.09 0.14 8.14 -51.93 -0.42 -0.28 16 32 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 33 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 34 H 0.40 5.85 8.33 -40.82 -0.34 5.51 16 35 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 36 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 37 H 0.09 2.48 6.06 -51.93 -0.31 2.16 16 38 H 0.02 0.54 8.14 -51.93 -0.42 0.11 16 39 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 40 H 0.06 1.27 7.62 -51.93 -0.40 0.88 16 41 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 42 H 0.05 1.02 7.45 -51.93 -0.39 0.63 16 43 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 44 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 45 H 0.24 1.77 8.06 -52.48 -0.42 1.34 16 LS Contribution 370.98 15.07 5.59 5.59 Total: -1.00 -32.37 370.98 -6.87 -39.24 By element: Atomic # 1 Polarization: 9.63 SS G_CDS: -6.79 Total: 2.85 kcal Atomic # 6 Polarization: 9.24 SS G_CDS: 0.15 Total: 9.38 kcal Atomic # 7 Polarization: -58.30 SS G_CDS: -0.28 Total: -58.58 kcal Atomic # 8 Polarization: -14.70 SS G_CDS: -0.51 Total: -15.21 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.03 Total: 16.74 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -32.37 -6.87 -39.24 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947498648.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.306 kcal (2) G-P(sol) polarization free energy of solvation -32.366 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.060 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.872 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.238 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.932 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds