Wall clock time and date at job start Tue Mar 31 2020 14:48:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42898 * 109.47016 * 2 1 4 4 C 1.35347 * 117.00257 * 179.97438 * 3 2 1 5 5 N 1.30543 * 125.45219 * 180.33158 * 4 3 2 6 6 C 1.36330 * 108.38589 * 180.13384 * 5 4 3 7 7 C 1.47369 * 126.41160 * 179.83415 * 6 5 4 8 8 O 1.21622 * 119.99826 * 179.69376 * 7 6 5 9 9 N 1.34781 * 120.00309 * 359.68218 * 7 6 5 10 10 C 1.46493 * 120.00117 * 180.02562 * 9 7 6 11 11 H 1.08998 * 109.45435 * 34.96667 * 10 9 7 12 12 C 1.53046 * 109.45720 * 274.99880 * 10 9 7 13 13 C 1.53198 * 109.31324 * 178.61379 * 12 10 9 14 14 N 1.46930 * 108.77203 * 54.63508 * 13 12 10 15 15 C 1.36935 * 120.62552 * 126.41664 * 14 13 12 16 16 H 1.08002 * 119.99539 * 209.00842 * 15 14 13 17 17 C 1.38814 * 120.00426 * 29.01091 * 15 14 13 18 18 N 1.31612 * 119.99931 * 15.02171 * 17 15 14 19 19 Si 1.86801 * 120.00047 * 195.02366 * 17 15 14 20 20 H 1.48501 * 109.47104 * 0.02562 * 19 17 15 21 21 H 1.48500 * 109.47119 * 119.99713 * 19 17 15 22 22 H 1.48497 * 109.46922 * 239.99906 * 19 17 15 23 23 C 1.46923 * 118.73936 * 306.39378 * 14 13 12 24 24 H 1.09007 * 109.58629 * 293.81850 * 23 14 13 25 25 C 1.53002 * 109.58650 * 173.39768 * 23 14 13 26 26 C 1.53036 * 109.46123 * 154.93406 * 10 9 7 27 27 C 1.35911 * 107.17096 * 359.56272 * 6 5 4 28 28 O 1.34205 * 125.44125 * 359.97438 * 4 3 2 29 29 H 1.09001 * 109.47212 * 300.00059 * 1 2 3 30 30 H 1.08994 * 109.47434 * 60.00133 * 1 2 3 31 31 H 1.08999 * 109.47064 * 180.02562 * 1 2 3 32 32 H 1.08994 * 109.46922 * 240.00162 * 2 1 3 33 33 H 1.09001 * 109.46619 * 119.99716 * 2 1 3 34 34 H 0.97002 * 119.99570 * 0.02562 * 9 7 6 35 35 H 1.08995 * 109.49769 * 58.66853 * 12 10 9 36 36 H 1.08996 * 109.49790 * 298.56606 * 12 10 9 37 37 H 1.08998 * 109.58822 * 174.42573 * 13 12 10 38 38 H 1.08999 * 109.58760 * 294.71148 * 13 12 10 39 39 H 0.97000 * 120.00190 * 179.97438 * 18 17 15 40 40 H 1.09001 * 109.47119 * 59.99766 * 25 23 14 41 41 H 1.08997 * 109.47533 * 179.97438 * 25 23 14 42 42 H 1.09002 * 109.46826 * 300.00159 * 25 23 14 43 43 H 1.08998 * 109.50128 * 61.43270 * 26 10 9 44 44 H 1.08997 * 109.52765 * 301.35207 * 26 10 9 45 45 H 1.08003 * 126.45030 * 180.25464 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3481 1.5247 0.0005 5 7 3.9594 2.6782 0.0068 6 6 5.3038 2.4524 0.0020 7 6 6.3629 3.4771 0.0029 8 8 7.5323 3.1430 0.0039 9 7 6.0357 4.7846 0.0024 10 6 7.0885 5.8032 0.0027 11 1 7.9354 5.4501 -0.5858 12 6 7.5416 6.0677 1.4404 13 6 8.6663 7.1078 1.4340 14 7 8.2005 8.3035 0.7184 15 6 8.2693 9.5388 1.3054 16 1 7.5553 10.3039 1.0386 17 6 9.2569 9.8077 2.2431 18 7 10.2929 9.0039 2.3567 19 14 9.1154 11.3102 3.3440 20 1 7.8662 12.0451 3.0203 21 1 9.0825 10.8811 4.7653 22 1 10.2845 12.1984 3.1219 23 6 7.6598 8.1487 -0.6389 24 1 8.4523 7.8231 -1.3129 25 6 7.0905 9.4849 -1.1198 26 6 6.5465 7.0969 -0.6093 27 6 5.4845 1.1053 0.0025 28 8 4.2629 0.5428 0.0016 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 5.1030 5.0510 0.0018 35 1 7.9058 5.1408 1.8834 36 1 6.7010 6.4443 2.0232 37 1 8.9247 7.3729 2.4592 38 1 9.5416 6.6964 0.9313 39 1 10.9832 9.1920 3.0117 40 1 7.8813 10.2350 -1.1281 41 1 6.6904 9.3681 -2.1269 42 1 6.2944 9.8039 -0.4469 43 1 5.7153 7.4639 -0.0071 44 1 6.2020 6.9031 -1.6250 45 1 6.4308 0.5848 0.0034 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000947498648.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:48:22 Heat of formation + Delta-G solvation = -52.010556 kcal Electronic energy + Delta-G solvation = -27314.632175 eV Core-core repulsion = 23334.149234 eV Total energy + Delta-G solvation = -3980.482941 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -44.56700 -40.98434 -39.97892 -39.21249 -36.20149 -36.03348 -34.20100 -33.04051 -32.77529 -31.34166 -30.50745 -28.01698 -26.85786 -25.48634 -24.53862 -23.79783 -23.31079 -22.29076 -21.46613 -21.04489 -20.04468 -18.66242 -18.53462 -18.12523 -17.43398 -17.24048 -16.79534 -16.60907 -16.07495 -15.93558 -15.70927 -15.53138 -15.12660 -14.83010 -14.63396 -14.45296 -14.29181 -13.92495 -13.56551 -13.32707 -12.95695 -12.73316 -12.69037 -12.66830 -12.61527 -12.54799 -12.34759 -12.05434 -11.95818 -11.83961 -11.79566 -11.71118 -11.50679 -11.49292 -11.06765 -10.54688 -10.11539 -9.75921 -8.63099 -7.81658 -5.27718 0.00373 0.81960 0.89238 1.47620 1.49781 1.59672 1.63534 2.06458 2.17739 2.54180 3.28909 3.35534 3.61921 3.71095 3.85895 3.93254 3.95926 4.05892 4.07774 4.26834 4.27532 4.37001 4.40449 4.62202 4.62690 4.72880 4.77210 4.81391 4.85520 4.87493 4.96286 5.07606 5.09347 5.16850 5.19273 5.40389 5.45332 5.54261 5.57469 5.62897 5.73713 5.75613 6.29134 6.45409 6.57794 7.08156 7.19317 7.90962 8.43687 9.25868 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.022387 B = 0.002402 C = 0.002360 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1250.452369 B =11655.011145 C =11863.988017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.041 3.959 3 O -0.256 6.256 4 C 0.386 3.614 5 N -0.482 5.482 6 C -0.074 4.074 7 C 0.600 3.400 8 O -0.566 6.566 9 N -0.696 5.696 10 C 0.161 3.839 11 H 0.066 0.934 12 C -0.131 4.131 13 C 0.183 3.817 14 N -0.603 5.603 15 C -0.245 4.245 16 H 0.080 0.920 17 C -0.059 4.059 18 N -0.940 5.940 19 Si 0.964 3.036 20 H -0.263 1.263 21 H -0.295 1.295 22 H -0.295 1.295 23 C 0.160 3.840 24 H 0.016 0.984 25 C -0.127 4.127 26 C -0.119 4.119 27 C 0.030 3.970 28 O -0.214 6.214 29 H 0.067 0.933 30 H 0.068 0.932 31 H 0.111 0.889 32 H 0.086 0.914 33 H 0.084 0.916 34 H 0.415 0.585 35 H 0.048 0.952 36 H 0.057 0.943 37 H 0.057 0.943 38 H -0.008 1.008 39 H 0.247 0.753 40 H 0.042 0.958 41 H 0.076 0.924 42 H 0.053 0.947 43 H 0.071 0.929 44 H 0.088 0.912 45 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.858 -20.310 -7.069 29.271 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.033 4.033 3 O -0.165 6.165 4 C 0.139 3.861 5 N -0.229 5.229 6 C -0.192 4.192 7 C 0.386 3.614 8 O -0.446 6.446 9 N -0.345 5.345 10 C 0.057 3.943 11 H 0.085 0.915 12 C -0.172 4.172 13 C 0.057 3.943 14 N -0.327 5.327 15 C -0.376 4.376 16 H 0.097 0.903 17 C -0.253 4.253 18 N -0.587 5.587 19 Si 0.793 3.207 20 H -0.187 1.187 21 H -0.222 1.222 22 H -0.223 1.223 23 C 0.054 3.946 24 H 0.034 0.966 25 C -0.184 4.184 26 C -0.159 4.159 27 C -0.043 4.043 28 O -0.105 6.105 29 H 0.086 0.914 30 H 0.087 0.913 31 H 0.130 0.870 32 H 0.104 0.896 33 H 0.102 0.898 34 H 0.251 0.749 35 H 0.067 0.933 36 H 0.076 0.924 37 H 0.075 0.925 38 H 0.010 0.990 39 H 0.056 0.944 40 H 0.061 0.939 41 H 0.095 0.905 42 H 0.072 0.928 43 H 0.090 0.910 44 H 0.106 0.894 45 H 0.282 0.718 Dipole moment (debyes) X Y Z Total from point charges -19.500 -19.837 -6.984 28.680 hybrid contribution 0.586 0.109 0.918 1.094 sum -18.914 -19.728 -6.066 27.995 Atomic orbital electron populations 1.21864 0.89802 1.05087 1.03860 1.23449 0.97937 0.77735 1.04177 1.86422 1.07795 1.33338 1.88910 1.23318 0.84204 0.81405 0.97196 1.71003 1.04138 1.22881 1.24831 1.21480 0.89851 0.94582 1.13273 1.16942 0.86238 0.82266 0.75950 1.90831 1.19322 1.81882 1.52554 1.45938 1.11206 1.04713 1.72627 1.20792 0.89753 0.87487 0.96273 0.91537 1.22334 0.99767 0.98507 0.96542 1.20464 0.91440 0.85223 0.97199 1.44439 1.72963 1.03145 1.12186 1.19580 1.08084 0.91253 1.18634 0.90278 1.25865 0.95045 1.00870 1.03550 1.70191 1.10443 1.40792 1.37302 0.85249 0.77536 0.79529 0.78429 1.18682 1.22229 1.22283 1.20633 0.93059 0.95018 0.85873 0.96620 1.21712 1.00268 0.95982 1.00482 1.22202 0.99104 0.93289 1.01296 1.25560 0.86651 0.92077 1.00013 1.84431 1.15958 1.38551 1.71581 0.91407 0.91255 0.87022 0.89569 0.89761 0.74880 0.93284 0.92400 0.92463 0.98971 0.94433 0.93927 0.90476 0.92777 0.90990 0.89363 0.71775 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.73 10.28 71.98 0.74 0.01 16 2 C 0.04 0.35 6.38 71.98 0.46 0.81 16 3 O -0.26 -4.48 10.19 -64.16 -0.65 -5.14 16 4 C 0.39 8.16 8.98 130.43 1.17 9.33 16 5 N -0.48 -12.53 11.10 -419.41 -4.65 -17.18 16 6 C -0.07 -1.92 6.99 40.31 0.28 -1.63 16 7 C 0.60 18.98 7.78 86.65 0.67 19.66 16 8 O -0.57 -21.15 16.55 -4.10 -0.07 -21.22 16 9 N -0.70 -21.39 5.07 -445.73 -2.26 -23.66 16 10 C 0.16 5.77 2.42 45.02 0.11 5.88 16 11 H 0.07 2.65 7.57 -2.39 -0.02 2.63 16 12 C -0.13 -5.46 5.65 30.68 0.17 -5.29 16 13 C 0.18 9.34 5.29 86.36 0.46 9.80 16 14 N -0.60 -30.29 2.99 -675.21 -2.02 -32.31 16 15 C -0.25 -13.25 8.60 84.03 0.72 -12.53 16 16 H 0.08 4.08 6.21 -2.91 -0.02 4.06 16 17 C -0.06 -3.32 4.96 84.86 0.42 -2.90 16 18 N -0.94 -57.05 11.14 21.65 0.24 -56.81 16 19 Si 0.96 45.50 29.58 68.60 2.03 47.53 16 20 H -0.26 -11.61 7.11 99.48 0.71 -10.90 16 21 H -0.30 -14.05 7.11 99.48 0.71 -13.35 16 22 H -0.30 -14.05 7.11 99.48 0.71 -13.34 16 23 C 0.16 6.51 3.50 44.98 0.16 6.67 16 24 H 0.02 0.69 8.14 -2.38 -0.02 0.67 16 25 C -0.13 -4.50 7.94 71.98 0.57 -3.92 16 26 C -0.12 -3.93 4.84 30.67 0.15 -3.79 16 27 C 0.03 0.56 11.93 67.28 0.80 1.36 16 28 O -0.21 -3.77 10.20 18.88 0.19 -3.58 16 29 H 0.07 0.41 8.14 -2.39 -0.02 0.39 16 30 H 0.07 0.40 8.14 -2.39 -0.02 0.38 16 31 H 0.11 0.02 8.14 -2.39 -0.02 0.00 16 32 H 0.09 0.54 8.14 -2.39 -0.02 0.52 16 33 H 0.08 0.56 8.14 -2.39 -0.02 0.54 16 34 H 0.41 11.32 8.33 -92.71 -0.77 10.55 16 35 H 0.05 2.06 8.14 -2.39 -0.02 2.04 16 36 H 0.06 2.38 8.14 -2.39 -0.02 2.36 16 37 H 0.06 3.29 6.06 -2.39 -0.01 3.27 16 38 H -0.01 -0.43 8.14 -2.39 -0.02 -0.45 16 39 H 0.25 14.55 8.31 -92.71 -0.77 13.78 16 40 H 0.04 1.66 7.62 -2.39 -0.02 1.65 16 41 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 42 H 0.05 1.91 7.45 -2.39 -0.02 1.89 16 43 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16 44 H 0.09 2.40 8.14 -2.39 -0.02 2.38 16 45 H 0.27 3.15 8.06 -2.91 -0.02 3.12 16 Total: -1.00 -72.25 370.98 -0.07 -72.32 By element: Atomic # 1 Polarization: 16.37 SS G_CDS: 0.23 Total: 16.60 kcal Atomic # 6 Polarization: 16.55 SS G_CDS: 6.89 Total: 23.44 kcal Atomic # 7 Polarization: -121.26 SS G_CDS: -8.69 Total: -129.96 kcal Atomic # 8 Polarization: -29.41 SS G_CDS: -0.53 Total: -29.93 kcal Atomic # 14 Polarization: 45.50 SS G_CDS: 2.03 Total: 47.53 kcal Total: -72.25 -0.07 -72.32 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947498648.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.306 kcal (2) G-P(sol) polarization free energy of solvation -72.247 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.317 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.011 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds